Wall clock time and date at job start Tue Mar 31 2020 01:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.20756 * 120.00269 * 2 1 4 4 C 1.50701 * 120.00023 * 180.02562 * 2 1 3 5 5 H 1.09003 * 109.47138 * 34.99915 * 4 2 1 6 6 C 1.52997 * 109.47322 * 275.00052 * 4 2 1 7 7 S 1.81398 * 109.47360 * 154.99569 * 4 2 1 8 8 C 1.81400 * 103.00129 * 184.99955 * 7 4 2 9 9 C 1.50701 * 109.47110 * 180.02562 * 8 7 4 10 10 C 1.38295 * 119.93297 * 90.00008 * 9 8 7 11 11 C 1.38099 * 120.06865 * 180.25412 * 10 9 8 12 12 C 1.38882 * 119.93206 * 359.47410 * 11 10 9 13 13 O 1.35746 * 120.07145 * 180.25590 * 12 11 10 14 14 C 1.34834 * 117.00340 * 174.73672 * 13 12 11 15 15 H 1.08003 * 119.99155 * 5.05417 * 14 13 12 16 16 C 1.38652 * 120.00189 * 185.05311 * 14 13 12 17 17 N 1.31560 * 119.99769 * 179.97438 * 16 14 13 18 18 Si 1.86794 * 120.00099 * 0.02562 * 16 14 13 19 19 H 1.48505 * 109.47365 * 90.00106 * 18 16 14 20 20 H 1.48504 * 109.47275 * 210.00122 * 18 16 14 21 21 H 1.48500 * 109.47373 * 330.00058 * 18 16 14 22 22 C 1.38876 * 119.85943 * 0.52538 * 12 11 10 23 23 C 1.38100 * 119.93177 * 359.72571 * 22 12 11 24 24 H 1.08996 * 109.47208 * 269.99666 * 1 2 3 25 25 H 1.08995 * 109.46898 * 29.99761 * 1 2 3 26 26 H 1.09009 * 109.47331 * 149.99398 * 1 2 3 27 27 H 1.09003 * 109.47499 * 179.97438 * 6 4 2 28 28 H 1.08991 * 109.47276 * 300.00172 * 6 4 2 29 29 H 1.09003 * 109.47006 * 59.99943 * 6 4 2 30 30 H 1.08996 * 109.46897 * 60.00868 * 8 7 4 31 31 H 1.09003 * 109.47101 * 300.00133 * 8 7 4 32 32 H 1.08000 * 119.96836 * 359.97438 * 10 9 8 33 33 H 1.08002 * 120.03655 * 179.72759 * 11 10 9 34 34 H 0.96997 * 119.99989 * 179.97438 * 17 16 14 35 35 H 1.07996 * 120.03796 * 179.70626 * 22 12 11 36 36 H 1.07997 * 119.96864 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0457 0.0000 4 6 2.2605 -1.3051 -0.0006 5 1 1.7131 -2.0404 -0.5904 6 6 2.4066 -1.8103 1.4362 7 16 3.9051 -1.0535 -0.7234 8 6 4.5881 -2.7332 -0.7782 9 6 5.9760 -2.6922 -1.3639 10 6 7.0700 -2.5229 -0.5351 11 6 8.3428 -2.4797 -1.0694 12 6 8.5243 -2.6175 -2.4394 13 8 9.7744 -2.5806 -2.9670 14 6 9.8893 -2.8292 -4.2872 15 1 9.0035 -2.9642 -4.8902 16 6 11.1444 -2.9113 -4.8706 17 7 11.2564 -3.1543 -6.1587 18 14 12.6763 -2.6784 -3.8274 19 1 13.1137 -3.9918 -3.2899 20 1 13.7599 -2.0993 -4.6616 21 1 12.3734 -1.7588 -2.7014 22 6 7.4236 -2.7874 -3.2690 23 6 6.1530 -2.8245 -2.7292 24 1 -0.3633 -0.0001 1.0276 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5140 27 1 2.9512 -2.7545 1.4357 28 1 2.9539 -1.0751 2.0259 29 1 1.4183 -1.9616 1.8704 30 1 3.9507 -3.3644 -1.3973 31 1 4.6322 -3.1406 0.2318 32 1 6.9287 -2.4198 0.5306 33 1 9.1965 -2.3430 -0.4221 34 1 12.1345 -3.2114 -6.5670 35 1 7.5610 -2.8900 -4.3353 36 1 5.2966 -2.9562 -3.3739 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267691700.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:13 Heat of formation + Delta-G solvation = -45.835861 kcal Electronic energy + Delta-G solvation = -18349.432181 eV Core-core repulsion = 15311.715883 eV Total energy + Delta-G solvation = -3037.716298 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.67509 -39.23947 -36.91812 -33.76277 -32.54648 -31.36673 -30.30539 -30.05667 -26.53663 -24.80403 -24.74506 -22.14836 -20.77685 -19.87220 -17.94778 -17.38378 -16.76777 -16.36099 -15.43969 -15.02780 -14.97966 -14.79706 -14.29311 -14.00946 -13.83765 -13.68352 -13.27640 -13.21469 -12.84448 -12.70950 -12.40028 -12.32691 -12.25111 -12.16471 -11.91994 -11.24299 -11.01619 -10.75860 -10.71014 -10.18980 -9.95170 -9.80049 -9.43770 -8.89463 -8.32249 -7.61173 -7.34807 -6.46284 -4.12354 1.22500 1.69865 2.09606 2.24502 2.73852 3.20399 3.23717 3.38613 3.66172 4.20457 4.47406 4.51179 4.61573 4.78462 4.79601 4.97058 5.00792 5.04759 5.06016 5.11631 5.17253 5.32764 5.55746 5.57318 5.62669 5.70295 5.74131 6.08474 6.26353 6.49948 6.73038 6.96657 7.15429 7.17014 7.23577 7.54359 7.75162 7.98471 8.88478 9.49773 10.61011 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.041826 B = 0.003051 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.287311 B = 9173.659058 C = 9332.055812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.372 3.628 3 O -0.433 6.433 4 C -0.133 4.133 5 H 0.108 0.892 6 C -0.139 4.139 7 S -0.213 6.213 8 C -0.027 4.027 9 C -0.172 4.172 10 C -0.054 4.054 11 C -0.193 4.193 12 C 0.167 3.833 13 O -0.213 6.213 14 C -0.390 4.390 15 H 0.108 0.892 16 C 0.064 3.936 17 N -0.876 5.876 18 Si 0.906 3.094 19 H -0.273 1.273 20 H -0.281 1.281 21 H -0.259 1.259 22 C -0.222 4.222 23 C -0.051 4.051 24 H 0.097 0.903 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.115 0.885 33 H 0.119 0.881 34 H 0.280 0.720 35 H 0.135 0.865 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.400 0.130 13.205 23.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.244 3.756 3 O -0.304 6.304 4 C -0.262 4.262 5 H 0.126 0.874 6 C -0.197 4.197 7 S 0.018 5.982 8 C -0.174 4.174 9 C -0.175 4.175 10 C -0.074 4.074 11 C -0.213 4.213 12 C 0.113 3.887 13 O -0.117 6.117 14 C -0.466 4.466 15 H 0.125 0.875 16 C -0.140 4.140 17 N -0.514 5.514 18 Si 0.731 3.269 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.183 1.183 22 C -0.241 4.241 23 C -0.071 4.071 24 H 0.115 0.885 25 H 0.108 0.892 26 H 0.105 0.895 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.133 0.867 33 H 0.137 0.863 34 H 0.091 0.909 35 H 0.153 0.847 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -18.266 1.682 12.783 22.358 hybrid contribution -0.018 -1.273 0.452 1.351 sum -18.284 0.409 13.235 22.575 Atomic orbital electron populations 1.22246 0.93264 1.05109 1.04773 1.24054 0.91799 0.88770 0.70964 1.90469 1.71670 1.34315 1.33972 1.23939 0.99235 1.01243 1.01783 0.87379 1.21926 1.02742 1.02369 0.92707 1.87890 1.13733 1.14844 1.81689 1.22165 0.97223 0.94712 1.03327 1.18619 0.91748 1.13257 0.93896 1.20478 0.91285 0.97244 0.98411 1.20185 0.97247 1.11371 0.92461 1.19169 0.84956 0.92485 0.92072 1.83571 1.23959 1.77623 1.26547 1.20799 0.96256 1.49693 0.79816 0.87501 1.24484 0.98389 0.95493 0.95598 1.69645 1.25737 1.46206 1.09789 0.86173 0.80886 0.79430 0.80395 1.19821 1.20698 1.18273 1.21252 0.91897 1.09892 1.01101 1.20648 0.96390 0.96469 0.93586 0.88483 0.89249 0.89541 0.91111 0.90909 0.91511 0.90201 0.90075 0.86705 0.86284 0.90940 0.84728 0.87053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.08 10.25 36.00 0.37 -0.71 16 2 C 0.37 3.70 6.39 -29.04 -0.19 3.52 16 3 O -0.43 -6.28 16.88 6.00 0.10 -6.18 16 4 C -0.13 -1.24 3.11 -27.88 -0.09 -1.33 16 5 H 0.11 0.77 8.10 -51.92 -0.42 0.35 16 6 C -0.14 -1.03 9.08 37.16 0.34 -0.69 16 7 S -0.21 -2.98 20.44 -107.50 -2.20 -5.18 16 8 C -0.03 -0.35 5.76 36.01 0.21 -0.14 16 9 C -0.17 -2.84 5.14 -104.57 -0.54 -3.38 16 10 C -0.05 -0.92 9.69 -39.61 -0.38 -1.31 16 11 C -0.19 -3.82 9.99 -39.39 -0.39 -4.21 16 12 C 0.17 3.84 6.65 -39.11 -0.26 3.58 16 13 O -0.21 -5.59 8.59 0.05 0.00 -5.59 16 14 C -0.39 -10.93 9.95 30.89 0.31 -10.63 16 15 H 0.11 3.05 5.44 -52.48 -0.29 2.77 16 16 C 0.06 1.79 5.49 -17.51 -0.10 1.69 16 17 N -0.88 -25.17 13.96 55.48 0.77 -24.40 16 18 Si 0.91 21.55 28.62 -169.99 -4.86 16.69 16 19 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.26 -6.19 7.11 56.52 0.40 -5.79 16 22 C -0.22 -4.77 9.17 -39.40 -0.36 -5.13 16 23 C -0.05 -0.92 9.69 -39.61 -0.38 -1.30 16 24 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.09 0.30 8.08 -51.92 -0.42 -0.11 16 27 H 0.07 0.50 6.92 -51.93 -0.36 0.14 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.90 8.08 -51.93 -0.42 0.48 16 31 H 0.08 0.89 7.09 -51.92 -0.37 0.52 16 32 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 33 H 0.12 2.18 8.06 -52.49 -0.42 1.76 16 34 H 0.28 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.14 3.03 5.64 -52.49 -0.30 2.73 16 36 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 324.57 15.07 4.89 4.89 Total: -1.00 -31.76 324.57 -7.42 -39.18 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -4.66 Total: 0.63 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: -1.47 Total: -20.05 kcal Atomic # 7 Polarization: -25.17 SS G_CDS: 0.77 Total: -24.40 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.10 Total: -11.76 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.86 Total: 16.69 kcal Atomic # 16 Polarization: -2.98 SS G_CDS: -2.20 Total: -5.18 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.76 -7.42 -39.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267691700.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.656 kcal (2) G-P(sol) polarization free energy of solvation -31.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds