Wall clock time and date at job start Tue Mar 31 2020 01:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.20756 * 120.00269 * 2 1 4 4 C 1.50701 * 120.00023 * 180.02562 * 2 1 3 5 5 H 1.09003 * 109.47138 * 34.99915 * 4 2 1 6 6 C 1.52997 * 109.47322 * 275.00052 * 4 2 1 7 7 S 1.81398 * 109.47360 * 154.99569 * 4 2 1 8 8 C 1.81400 * 103.00129 * 184.99955 * 7 4 2 9 9 C 1.50701 * 109.47110 * 180.02562 * 8 7 4 10 10 C 1.38295 * 119.93297 * 90.00008 * 9 8 7 11 11 C 1.38099 * 120.06865 * 180.25412 * 10 9 8 12 12 C 1.38882 * 119.93206 * 359.47410 * 11 10 9 13 13 O 1.35746 * 120.07145 * 180.25590 * 12 11 10 14 14 C 1.34834 * 117.00340 * 174.73672 * 13 12 11 15 15 H 1.08003 * 119.99155 * 5.05417 * 14 13 12 16 16 C 1.38652 * 120.00189 * 185.05311 * 14 13 12 17 17 N 1.31560 * 119.99769 * 179.97438 * 16 14 13 18 18 Si 1.86794 * 120.00099 * 0.02562 * 16 14 13 19 19 H 1.48505 * 109.47365 * 90.00106 * 18 16 14 20 20 H 1.48504 * 109.47275 * 210.00122 * 18 16 14 21 21 H 1.48500 * 109.47373 * 330.00058 * 18 16 14 22 22 C 1.38876 * 119.85943 * 0.52538 * 12 11 10 23 23 C 1.38100 * 119.93177 * 359.72571 * 22 12 11 24 24 H 1.08996 * 109.47208 * 269.99666 * 1 2 3 25 25 H 1.08995 * 109.46898 * 29.99761 * 1 2 3 26 26 H 1.09009 * 109.47331 * 149.99398 * 1 2 3 27 27 H 1.09003 * 109.47499 * 179.97438 * 6 4 2 28 28 H 1.08991 * 109.47276 * 300.00172 * 6 4 2 29 29 H 1.09003 * 109.47006 * 59.99943 * 6 4 2 30 30 H 1.08996 * 109.46897 * 60.00868 * 8 7 4 31 31 H 1.09003 * 109.47101 * 300.00133 * 8 7 4 32 32 H 1.08000 * 119.96836 * 359.97438 * 10 9 8 33 33 H 1.08002 * 120.03655 * 179.72759 * 11 10 9 34 34 H 0.96997 * 119.99989 * 179.97438 * 17 16 14 35 35 H 1.07996 * 120.03796 * 179.70626 * 22 12 11 36 36 H 1.07997 * 119.96864 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0457 0.0000 4 6 2.2605 -1.3051 -0.0006 5 1 1.7131 -2.0404 -0.5904 6 6 2.4066 -1.8103 1.4362 7 16 3.9051 -1.0535 -0.7234 8 6 4.5881 -2.7332 -0.7782 9 6 5.9760 -2.6922 -1.3639 10 6 7.0700 -2.5229 -0.5351 11 6 8.3428 -2.4797 -1.0694 12 6 8.5243 -2.6175 -2.4394 13 8 9.7744 -2.5806 -2.9670 14 6 9.8893 -2.8292 -4.2872 15 1 9.0035 -2.9642 -4.8902 16 6 11.1444 -2.9113 -4.8706 17 7 11.2564 -3.1543 -6.1587 18 14 12.6763 -2.6784 -3.8274 19 1 13.1137 -3.9918 -3.2899 20 1 13.7599 -2.0993 -4.6616 21 1 12.3734 -1.7588 -2.7014 22 6 7.4236 -2.7874 -3.2690 23 6 6.1530 -2.8245 -2.7292 24 1 -0.3633 -0.0001 1.0276 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5140 27 1 2.9512 -2.7545 1.4357 28 1 2.9539 -1.0751 2.0259 29 1 1.4183 -1.9616 1.8704 30 1 3.9507 -3.3644 -1.3973 31 1 4.6322 -3.1406 0.2318 32 1 6.9287 -2.4198 0.5306 33 1 9.1965 -2.3430 -0.4221 34 1 12.1345 -3.2114 -6.5670 35 1 7.5610 -2.8900 -4.3353 36 1 5.2966 -2.9562 -3.3739 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267691700.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:12 Heat of formation + Delta-G solvation = -64.575605 kcal Electronic energy + Delta-G solvation = -18350.244797 eV Core-core repulsion = 15311.715883 eV Total energy + Delta-G solvation = -3038.528914 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.93309 -40.49246 -38.58213 -34.57541 -34.45384 -32.82885 -31.86196 -30.57869 -28.16149 -26.49114 -25.40950 -23.74773 -22.28412 -20.68986 -19.85461 -19.15118 -17.79624 -17.08101 -16.72299 -16.32649 -16.23549 -15.96512 -15.70139 -15.64254 -15.25846 -14.88186 -14.57757 -14.35455 -14.11727 -13.94358 -13.67903 -13.28446 -13.13334 -12.95206 -12.83676 -12.76645 -12.53759 -12.44023 -12.20183 -11.95614 -11.32080 -10.94521 -10.73777 -10.68234 -9.85788 -9.00032 -8.67933 -8.52314 -6.24979 0.11356 0.53225 0.79988 1.13070 1.30644 1.35055 1.51268 1.69578 2.26735 2.76688 2.98761 3.04356 3.13512 3.83388 3.89672 3.92437 4.04237 4.11523 4.20747 4.30375 4.50083 4.56337 4.62192 4.66415 4.72009 4.73653 4.81907 4.92869 5.13869 5.19164 5.21642 5.32546 5.52132 5.66922 5.75852 5.86621 6.18088 6.46720 6.81690 7.54699 8.59232 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.041826 B = 0.003051 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.287311 B = 9173.659058 C = 9332.055812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.370 3.630 3 O -0.491 6.491 4 C -0.116 4.116 5 H 0.140 0.860 6 C -0.137 4.137 7 S -0.291 6.291 8 C -0.015 4.015 9 C -0.148 4.148 10 C -0.050 4.050 11 C -0.193 4.193 12 C 0.126 3.874 13 O -0.242 6.242 14 C -0.401 4.401 15 H 0.082 0.918 16 C 0.011 3.989 17 N -0.922 5.922 18 Si 0.971 3.029 19 H -0.263 1.263 20 H -0.267 1.267 21 H -0.264 1.264 22 C -0.239 4.239 23 C -0.055 4.055 24 H 0.121 0.879 25 H 0.085 0.915 26 H 0.114 0.886 27 H 0.080 0.920 28 H 0.053 0.947 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.110 0.890 32 H 0.154 0.846 33 H 0.131 0.869 34 H 0.285 0.715 35 H 0.110 0.890 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.430 -0.722 16.381 27.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.246 3.754 3 O -0.366 6.366 4 C -0.245 4.245 5 H 0.158 0.842 6 C -0.196 4.196 7 S -0.061 6.061 8 C -0.162 4.162 9 C -0.150 4.150 10 C -0.070 4.070 11 C -0.212 4.212 12 C 0.076 3.924 13 O -0.149 6.149 14 C -0.477 4.477 15 H 0.099 0.901 16 C -0.188 4.188 17 N -0.562 5.562 18 Si 0.793 3.207 19 H -0.188 1.188 20 H -0.192 1.192 21 H -0.188 1.188 22 C -0.258 4.258 23 C -0.074 4.074 24 H 0.139 0.861 25 H 0.103 0.897 26 H 0.133 0.867 27 H 0.099 0.901 28 H 0.073 0.927 29 H 0.118 0.882 30 H 0.121 0.879 31 H 0.128 0.872 32 H 0.172 0.828 33 H 0.149 0.851 34 H 0.095 0.905 35 H 0.128 0.872 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -21.340 0.806 15.981 26.673 hybrid contribution 0.440 -0.988 -0.312 1.125 sum -20.900 -0.182 15.669 26.122 Atomic orbital electron populations 1.22287 0.89443 1.06331 1.06597 1.24835 0.93827 0.88037 0.68668 1.90469 1.73079 1.36148 1.36911 1.24114 0.95327 1.01938 1.03109 0.84168 1.21948 1.04623 1.02015 0.90988 1.88205 1.18796 1.16077 1.82975 1.22138 0.94679 0.94208 1.05145 1.19116 0.94098 1.08738 0.93067 1.20946 0.90062 0.95483 1.00466 1.20515 0.99185 1.10426 0.91116 1.19710 0.84435 0.94524 0.93712 1.83516 1.25672 1.80557 1.25190 1.20725 0.95864 1.50243 0.80903 0.90092 1.25292 1.01268 0.95444 0.96780 1.69728 1.26677 1.48597 1.11247 0.85212 0.77347 0.79546 0.78590 1.18814 1.19174 1.18813 1.21267 0.93441 1.11013 1.00070 1.20927 0.95549 0.95917 0.95048 0.86109 0.89665 0.86699 0.90122 0.92733 0.88186 0.87869 0.87182 0.82827 0.85076 0.90488 0.87211 0.84628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.31 10.25 71.24 0.73 -0.58 16 2 C 0.37 6.33 6.39 29.10 0.19 6.52 16 3 O -0.49 -13.86 16.88 -1.44 -0.02 -13.88 16 4 C -0.12 -1.69 3.11 29.85 0.09 -1.60 16 5 H 0.14 1.20 8.10 -2.39 -0.02 1.18 16 6 C -0.14 -1.39 9.08 71.98 0.65 -0.74 16 7 S -0.29 -7.39 20.44 -56.49 -1.15 -8.54 16 8 C -0.01 -0.31 5.76 71.24 0.41 0.10 16 9 C -0.15 -4.46 5.14 -19.83 -0.10 -4.56 16 10 C -0.05 -1.56 9.69 22.25 0.22 -1.34 16 11 C -0.19 -7.50 9.99 22.39 0.22 -7.27 16 12 C 0.13 6.01 6.65 22.58 0.15 6.16 16 13 O -0.24 -13.35 8.59 -22.74 -0.20 -13.55 16 14 C -0.40 -23.96 9.95 67.92 0.68 -23.28 16 15 H 0.08 5.06 5.44 -2.91 -0.02 5.05 16 16 C 0.01 0.63 5.49 84.83 0.47 1.10 16 17 N -0.92 -55.56 13.96 21.61 0.30 -55.26 16 18 Si 0.97 45.87 28.62 68.60 1.96 47.83 16 19 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 20 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 21 H -0.26 -12.50 7.11 99.48 0.71 -11.79 16 22 C -0.24 -10.68 9.17 22.39 0.21 -10.48 16 23 C -0.05 -1.92 9.69 22.25 0.22 -1.71 16 24 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 25 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.11 0.18 8.08 -2.38 -0.02 0.16 16 27 H 0.08 0.69 6.92 -2.39 -0.02 0.67 16 28 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.10 1.78 8.08 -2.39 -0.02 1.76 16 31 H 0.11 1.77 7.09 -2.39 -0.02 1.75 16 32 H 0.15 3.64 8.06 -2.91 -0.02 3.61 16 33 H 0.13 4.68 8.06 -2.91 -0.02 4.66 16 34 H 0.29 15.74 8.31 -92.71 -0.77 14.97 16 35 H 0.11 5.40 5.64 -2.91 -0.02 5.38 16 36 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -75.85 324.57 6.09 -69.76 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: 1.08 Total: 11.34 kcal Atomic # 6 Polarization: -41.82 SS G_CDS: 4.12 Total: -37.70 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: 0.30 Total: -55.26 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.22 Total: -27.43 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.96 Total: 47.83 kcal Atomic # 16 Polarization: -7.39 SS G_CDS: -1.15 Total: -8.54 kcal Total: -75.85 6.09 -69.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267691700.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.181 kcal (2) G-P(sol) polarization free energy of solvation -75.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds