Wall clock time and date at job start Tue Mar 31 2020 01:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38259 * 120.00036 * 2 1 4 4 C 1.38213 * 119.99666 * 179.74118 * 3 2 1 5 5 C 1.38255 * 120.00136 * 0.55912 * 4 3 2 6 6 C 1.38217 * 120.00091 * 359.69520 * 5 4 3 7 7 C 1.38214 * 120.00023 * 180.27821 * 2 1 3 8 8 C 1.50699 * 119.99714 * 359.97438 * 7 2 1 9 9 H 1.09004 * 109.47778 * 325.00018 * 8 7 2 10 10 C 1.53003 * 109.47297 * 85.00261 * 8 7 2 11 11 O 1.45201 * 109.47270 * 205.00144 * 8 7 2 12 12 C 1.34226 * 117.00515 * 150.00173 * 11 8 7 13 13 O 1.20824 * 119.99587 * 359.97438 * 12 11 8 14 14 C 1.50703 * 120.00201 * 180.02562 * 12 11 8 15 15 S 1.80999 * 109.46834 * 179.97438 * 14 12 11 16 16 C 1.76200 * 99.99614 * 180.02562 * 15 14 12 17 17 H 1.07998 * 120.00470 * 359.97438 * 16 15 14 18 18 C 1.38808 * 119.99761 * 180.02562 * 16 15 14 19 19 N 1.31629 * 119.99947 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99768 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46957 * 89.99976 * 20 18 16 22 22 H 1.48493 * 109.47049 * 209.99869 * 20 18 16 23 23 H 1.48497 * 109.47201 * 329.99959 * 20 18 16 24 24 H 1.09002 * 109.47152 * 269.72306 * 1 2 3 25 25 H 1.09001 * 109.46980 * 149.72407 * 1 2 3 26 26 H 1.09004 * 109.47113 * 29.72387 * 1 2 3 27 27 H 1.08000 * 119.99861 * 0.02562 * 3 2 1 28 28 H 1.07999 * 119.99581 * 180.27742 * 4 3 2 29 29 H 1.08004 * 119.99870 * 179.72176 * 5 4 3 30 30 H 1.07994 * 119.99924 * 180.02562 * 6 5 4 31 31 H 1.09000 * 109.47504 * 179.97438 * 10 8 7 32 32 H 1.09000 * 109.47252 * 299.99943 * 10 8 7 33 33 H 1.09007 * 109.46910 * 59.99985 * 10 8 7 34 34 H 1.08991 * 109.47143 * 300.00072 * 14 12 11 35 35 H 1.08999 * 109.46933 * 59.99904 * 14 12 11 36 36 H 0.97000 * 119.99565 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 0.0054 5 6 4.2717 0.0000 -0.0009 6 6 3.5806 -1.1970 -0.0062 7 6 2.1981 -1.1969 -0.0058 8 6 1.4446 -2.5020 -0.0116 9 1 0.5340 -2.3985 0.5787 10 6 1.0801 -2.8742 -1.4502 11 8 2.2772 -3.5442 0.5619 12 6 1.6487 -4.5463 1.1963 13 8 0.4428 -4.5522 1.2705 14 6 2.4473 -5.6635 1.8171 15 16 1.3223 -6.8510 2.5918 16 6 2.4888 -8.0132 3.2189 17 1 3.5457 -7.8552 3.0630 18 6 2.0492 -9.1323 3.9125 19 7 0.7609 -9.3251 4.1021 20 14 3.2858 -10.3647 4.5768 21 1 3.6829 -9.9745 5.9535 22 1 2.6720 -11.7166 4.6032 23 1 4.4855 -10.3828 3.7019 24 1 -0.3633 -0.0050 1.0277 25 1 -0.3633 -0.8875 -0.5181 26 1 -0.3633 0.8925 -0.5096 27 1 1.6583 2.1326 0.0004 28 1 4.1204 2.1326 0.0099 29 1 5.3517 0.0000 -0.0012 30 1 4.1206 -2.1323 -0.0107 31 1 0.5355 -3.8184 -1.4544 32 1 0.4551 -2.0919 -1.8807 33 1 1.9907 -2.9778 -2.0405 34 1 3.0308 -6.1653 1.0453 35 1 3.1189 -5.2541 2.5718 36 1 0.4538 -10.1073 4.5865 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268974037.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:19:46 Heat of formation + Delta-G solvation = -74.132468 kcal Electronic energy + Delta-G solvation = -18795.539296 eV Core-core repulsion = 15756.595965 eV Total energy + Delta-G solvation = -3038.943331 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.48829 -39.32525 -36.31155 -33.67763 -32.48841 -32.28882 -29.89357 -29.18510 -27.13261 -25.57010 -24.09255 -22.42592 -20.97507 -20.24287 -17.99080 -17.29522 -16.85886 -15.93601 -15.65882 -15.36683 -14.85120 -14.71548 -14.25598 -14.03636 -13.69097 -13.59335 -13.25177 -12.89647 -12.68811 -12.43329 -12.35393 -12.21018 -11.95216 -11.61522 -11.16793 -11.10048 -11.06958 -10.84563 -10.75746 -10.53123 -10.00156 -9.90463 -9.11814 -8.94670 -8.75334 -8.36357 -6.60569 -6.27699 -4.00265 1.13813 1.25359 2.63186 2.66319 3.20410 3.23611 3.28361 3.50000 3.60250 4.14512 4.46350 4.65399 4.75936 4.91326 4.96492 5.07015 5.08210 5.09021 5.15811 5.34653 5.41670 5.44342 5.51874 5.58290 5.74374 5.76408 5.77715 5.85196 6.01575 6.06696 6.08264 6.29263 6.36693 6.46502 6.76436 6.84784 7.55093 8.17330 8.30034 9.17854 10.79815 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.033509 B = 0.003353 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.388605 B = 8349.887546 C = 8818.312093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.074 4.074 3 C -0.123 4.123 4 C -0.117 4.117 5 C -0.128 4.128 6 C -0.090 4.090 7 C -0.087 4.087 8 C 0.125 3.875 9 H 0.096 0.904 10 C -0.164 4.164 11 O -0.354 6.354 12 C 0.480 3.520 13 O -0.487 6.487 14 C -0.129 4.129 15 S -0.058 6.058 16 C -0.536 4.536 17 H 0.076 0.924 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.922 3.078 21 H -0.276 1.276 22 H -0.282 1.282 23 H -0.271 1.271 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.122 0.878 28 H 0.121 0.879 29 H 0.122 0.878 30 H 0.132 0.868 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.077 19.284 -9.981 22.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.075 4.075 3 C -0.141 4.141 4 C -0.135 4.135 5 C -0.146 4.146 6 C -0.108 4.108 7 C -0.087 4.087 8 C 0.070 3.930 9 H 0.114 0.886 10 C -0.221 4.221 11 O -0.272 6.272 12 C 0.321 3.679 13 O -0.373 6.373 14 C -0.276 4.276 15 S 0.168 5.832 16 C -0.684 4.684 17 H 0.094 0.906 18 C -0.135 4.135 19 N -0.502 5.502 20 Si 0.748 3.252 21 H -0.202 1.202 22 H -0.207 1.207 23 H -0.196 1.196 24 H 0.093 0.907 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.140 0.860 28 H 0.139 0.861 29 H 0.140 0.860 30 H 0.150 0.850 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.413 19.193 -9.843 21.705 hybrid contribution 2.098 -0.717 0.373 2.248 sum 4.511 18.476 -9.470 21.246 Atomic orbital electron populations 1.20950 0.91119 1.03136 1.02968 1.19669 0.96087 0.92217 0.99482 1.20954 0.94279 0.97127 1.01737 1.21151 0.94297 0.98074 0.99962 1.21166 0.99979 0.92406 1.01060 1.21077 0.93479 0.98668 0.97614 1.19535 0.94190 0.92801 1.02194 1.21351 0.93264 0.83257 0.95118 0.88606 1.22187 1.02513 1.02816 0.94617 1.86545 1.41653 1.32842 1.66148 1.23313 0.87748 0.81808 0.75006 1.90650 1.15398 1.75717 1.55517 1.23298 1.03970 0.96843 1.03534 1.85406 1.08550 1.20323 1.68897 1.22848 0.94340 1.09574 1.41676 0.90591 1.25006 0.95936 0.97318 0.95253 1.70013 1.13209 1.28206 1.38811 0.86119 0.80347 0.79528 0.79235 1.20186 1.20712 1.19576 0.90671 0.91011 0.91236 0.85962 0.86136 0.85962 0.85044 0.91133 0.90715 0.91423 0.87923 0.87955 0.92072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.13 9.22 36.01 0.33 -0.80 16 2 C -0.07 -0.81 5.88 -104.62 -0.62 -1.42 16 3 C -0.12 -1.18 9.70 -39.58 -0.38 -1.56 16 4 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 5 C -0.13 -1.30 10.05 -39.58 -0.40 -1.69 16 6 C -0.09 -1.08 9.35 -39.58 -0.37 -1.45 16 7 C -0.09 -1.08 5.07 -104.63 -0.53 -1.61 16 8 C 0.13 1.73 2.08 -27.88 -0.06 1.67 16 9 H 0.10 1.41 6.00 -51.93 -0.31 1.10 16 10 C -0.16 -1.95 9.34 37.16 0.35 -1.61 16 11 O -0.35 -5.73 8.71 -39.25 -0.34 -6.07 16 12 C 0.48 9.26 7.95 36.01 0.29 9.55 16 13 O -0.49 -10.63 15.08 -18.75 -0.28 -10.91 16 14 C -0.13 -2.63 6.27 36.01 0.23 -2.41 16 15 S -0.06 -1.55 20.58 -107.50 -2.21 -3.76 16 16 C -0.54 -15.06 9.50 30.94 0.29 -14.77 16 17 H 0.08 2.02 7.80 -52.49 -0.41 1.61 16 18 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 19 N -0.87 -25.76 13.22 55.49 0.73 -25.03 16 20 Si 0.92 21.15 29.55 -169.99 -5.02 16.13 16 21 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.65 5.43 -51.93 -0.28 0.37 16 26 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 27 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 28 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 29 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 30 H 0.13 1.56 7.34 -52.49 -0.39 1.18 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.73 6.91 -51.93 -0.36 0.37 16 33 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 34 H 0.10 1.94 8.14 -51.92 -0.42 1.52 16 35 H 0.10 1.95 8.14 -51.92 -0.42 1.53 16 36 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 323.17 15.07 4.87 4.87 Total: -1.00 -32.10 323.17 -8.30 -40.41 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -4.68 Total: -0.05 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: -1.36 Total: -15.58 kcal Atomic # 7 Polarization: -25.76 SS G_CDS: 0.73 Total: -25.03 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.62 Total: -16.99 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.10 -8.30 -40.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268974037.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.727 kcal (2) G-P(sol) polarization free energy of solvation -32.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds