Wall clock time and date at job start Tue Mar 31 2020 01:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38253 * 120.00391 * 2 1 4 4 C 1.38209 * 119.99869 * 180.23566 * 3 2 1 5 5 C 1.38262 * 120.00222 * 359.80486 * 4 3 2 6 6 C 1.38208 * 119.99656 * 359.97438 * 5 4 3 7 7 C 1.38219 * 119.99498 * 179.78650 * 2 1 3 8 8 C 1.50695 * 120.00183 * 0.02562 * 7 2 1 9 9 H 1.09000 * 109.47475 * 34.72219 * 8 7 2 10 10 C 1.53000 * 109.47065 * 274.72224 * 8 7 2 11 11 O 1.45202 * 109.47280 * 154.72726 * 8 7 2 12 12 C 1.34230 * 116.99836 * 210.00118 * 11 8 7 13 13 O 1.20833 * 119.99930 * 359.97438 * 12 11 8 14 14 C 1.50697 * 120.00262 * 180.27336 * 12 11 8 15 15 S 1.80992 * 109.47473 * 179.72204 * 14 12 11 16 16 C 1.76208 * 100.00171 * 179.97438 * 15 14 12 17 17 H 1.07993 * 119.99543 * 0.02562 * 16 15 14 18 18 C 1.38800 * 119.99913 * 179.97438 * 16 15 14 19 19 N 1.31633 * 119.99895 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 119.99807 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47181 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47424 * 119.99792 * 20 18 16 23 23 H 1.48500 * 109.46979 * 240.00040 * 20 18 16 24 24 H 1.08998 * 109.46712 * 270.21279 * 1 2 3 25 25 H 1.08994 * 109.46647 * 30.20961 * 1 2 3 26 26 H 1.08993 * 109.47404 * 150.21106 * 1 2 3 27 27 H 1.07998 * 120.00138 * 0.05960 * 3 2 1 28 28 H 1.08003 * 119.99817 * 179.83526 * 4 3 2 29 29 H 1.07997 * 119.99657 * 180.02562 * 5 4 3 30 30 H 1.08003 * 119.99561 * 179.97438 * 6 5 4 31 31 H 1.09001 * 109.47630 * 180.02562 * 10 8 7 32 32 H 1.09000 * 109.46969 * 300.00304 * 10 8 7 33 33 H 1.09000 * 109.47394 * 59.99644 * 10 8 7 34 34 H 1.09004 * 109.46801 * 299.72165 * 14 12 11 35 35 H 1.09000 * 109.47461 * 59.71633 * 14 12 11 36 36 H 0.96998 * 119.99307 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1971 -0.0049 5 6 4.2717 -0.0003 -0.0058 6 6 3.5806 -1.1971 -0.0012 7 6 2.1980 -1.1971 0.0045 8 6 1.4445 -2.5021 0.0087 9 1 0.5315 -2.3965 -0.5773 10 6 1.0861 -2.8793 1.4475 11 8 2.2747 -3.5423 -0.5717 12 6 1.6435 -4.5421 -1.2071 13 8 0.4371 -4.5481 -1.2756 14 6 2.4390 -5.6606 -1.8293 15 16 1.3104 -6.8490 -2.5973 16 6 2.4738 -8.0128 -3.2273 17 1 3.5313 -7.8550 -3.0760 18 6 2.0309 -9.1329 -3.9171 19 7 0.7417 -9.3260 -4.1001 20 14 3.2642 -10.3669 -4.5844 21 1 4.6406 -9.9231 -4.2471 22 1 3.0103 -11.6982 -3.9775 23 1 3.1223 -10.4603 -6.0596 24 1 -0.3633 0.0038 1.0277 25 1 -0.3632 0.8881 -0.5171 26 1 -0.3634 -0.8918 -0.5105 27 1 1.6585 2.1326 0.0010 28 1 4.1205 2.1324 -0.0076 29 1 5.3517 -0.0003 -0.0092 30 1 4.1206 -2.1325 -0.0022 31 1 0.5414 -3.8235 1.4508 32 1 1.9990 -2.9849 2.0336 33 1 0.4629 -2.0984 1.8834 34 1 3.1079 -5.2528 -2.5872 35 1 3.0252 -6.1617 -1.0591 36 1 0.4323 -10.1086 -4.5825 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268974039.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:19:49 Heat of formation + Delta-G solvation = -90.134144 kcal Electronic energy + Delta-G solvation = -18796.385014 eV Core-core repulsion = 15756.747799 eV Total energy + Delta-G solvation = -3039.637216 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.78733 -40.32685 -37.70341 -34.61972 -34.58956 -33.19185 -31.28527 -30.30435 -27.86177 -27.71967 -25.13828 -23.46624 -22.00171 -21.36033 -19.93153 -18.75753 -17.99324 -17.38407 -16.91059 -16.74207 -16.35887 -16.02618 -15.52598 -15.28386 -14.77761 -14.63500 -14.40299 -14.15917 -14.00086 -13.67006 -13.25761 -13.20867 -13.15896 -12.93158 -12.89498 -12.66706 -12.60594 -12.01213 -11.81117 -11.78202 -11.62751 -11.52666 -11.18138 -10.38970 -9.75123 -9.55903 -8.74528 -8.38389 -6.18142 0.32723 0.46280 1.01010 1.10229 1.40746 1.41838 1.55982 1.86016 2.23010 2.79908 2.96811 3.24234 3.50118 3.72064 3.85932 4.00071 4.02665 4.08136 4.16137 4.24203 4.41316 4.42591 4.53782 4.66778 4.70110 4.79259 4.83637 4.91823 5.01249 5.12594 5.23048 5.29735 5.40712 5.57100 5.61787 5.68293 6.08483 6.17656 6.66697 7.03512 8.71155 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.033566 B = 0.003352 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.987897 B = 8352.127241 C = 8820.083333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.084 4.084 3 C -0.125 4.125 4 C -0.115 4.115 5 C -0.133 4.133 6 C -0.109 4.109 7 C -0.108 4.108 8 C 0.120 3.880 9 H 0.085 0.915 10 C -0.157 4.157 11 O -0.345 6.345 12 C 0.488 3.512 13 O -0.518 6.518 14 C -0.108 4.108 15 S -0.135 6.135 16 C -0.548 4.548 17 H 0.085 0.915 18 C 0.016 3.984 19 N -0.910 5.910 20 Si 1.001 2.999 21 H -0.257 1.257 22 H -0.273 1.273 23 H -0.273 1.273 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.056 0.944 27 H 0.148 0.852 28 H 0.149 0.851 29 H 0.142 0.858 30 H 0.124 0.876 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.964 20.899 10.486 24.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.084 4.084 3 C -0.142 4.142 4 C -0.132 4.132 5 C -0.151 4.151 6 C -0.127 4.127 7 C -0.108 4.108 8 C 0.066 3.934 9 H 0.103 0.897 10 C -0.214 4.214 11 O -0.263 6.263 12 C 0.331 3.669 13 O -0.406 6.406 14 C -0.257 4.257 15 S 0.092 5.908 16 C -0.696 4.696 17 H 0.104 0.896 18 C -0.189 4.189 19 N -0.546 5.546 20 Si 0.822 3.178 21 H -0.181 1.181 22 H -0.198 1.198 23 H -0.199 1.199 24 H 0.106 0.894 25 H 0.104 0.896 26 H 0.075 0.925 27 H 0.166 0.834 28 H 0.167 0.833 29 H 0.160 0.840 30 H 0.142 0.858 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.115 0.885 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.319 20.837 10.369 23.672 hybrid contribution 1.530 -1.034 -0.440 1.898 sum 5.848 19.803 9.930 22.912 Atomic orbital electron populations 1.20974 0.90193 1.03366 1.03517 1.19903 0.96972 0.92162 0.99349 1.21303 0.94716 0.97567 1.00641 1.21545 0.94450 0.98900 0.98348 1.21433 1.01102 0.92068 1.00471 1.21147 0.93431 0.99333 0.98805 1.19503 0.94516 0.92417 1.04372 1.21659 0.92835 0.83335 0.95586 0.89715 1.22131 1.02971 1.02688 0.93633 1.86515 1.41736 1.32808 1.65234 1.22999 0.87021 0.82078 0.74817 1.90644 1.16572 1.76455 1.56935 1.23088 1.02602 0.95860 1.04132 1.85513 1.12194 1.22728 1.70397 1.23230 0.94692 1.09822 1.41859 0.89641 1.26121 0.98013 0.99450 0.95320 1.70171 1.15412 1.29023 1.39983 0.84875 0.78025 0.77043 0.77835 1.18064 1.19831 1.19864 0.89419 0.89602 0.92548 0.83405 0.83283 0.84033 0.85834 0.92828 0.90779 0.88522 0.86252 0.86006 0.91826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.07 9.42 71.24 0.67 -1.40 16 2 C -0.08 -1.68 5.88 -19.86 -0.12 -1.80 16 3 C -0.12 -2.02 9.70 22.27 0.22 -1.81 16 4 C -0.11 -1.77 10.05 22.27 0.22 -1.55 16 5 C -0.13 -2.40 10.05 22.27 0.22 -2.18 16 6 C -0.11 -2.50 9.35 22.27 0.21 -2.29 16 7 C -0.11 -2.61 5.07 -19.87 -0.10 -2.71 16 8 C 0.12 3.33 2.28 29.85 0.07 3.40 16 9 H 0.09 2.57 5.17 -2.39 -0.01 2.56 16 10 C -0.16 -3.71 9.53 71.98 0.69 -3.02 16 11 O -0.35 -11.22 8.71 -51.41 -0.45 -11.67 16 12 C 0.49 19.09 7.95 71.23 0.57 19.65 16 13 O -0.52 -23.29 15.08 21.94 0.33 -22.96 16 14 C -0.11 -4.44 6.27 71.23 0.45 -3.99 16 15 S -0.14 -7.39 20.58 -56.49 -1.16 -8.56 16 16 C -0.55 -30.94 9.50 67.95 0.65 -30.30 16 17 H 0.09 4.50 7.80 -2.91 -0.02 4.48 16 18 C 0.02 0.90 5.49 84.86 0.47 1.37 16 19 N -0.91 -54.95 13.22 21.65 0.29 -54.67 16 20 Si 1.00 43.10 29.55 68.60 2.03 45.13 16 21 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 22 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 23 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 24 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.09 1.12 8.09 -2.39 -0.02 1.10 16 26 H 0.06 1.13 6.02 -2.39 -0.01 1.11 16 27 H 0.15 1.60 8.06 -2.91 -0.02 1.57 16 28 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 29 H 0.14 1.92 8.06 -2.91 -0.02 1.89 16 30 H 0.12 2.90 7.34 -2.91 -0.02 2.88 16 31 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.10 1.80 7.95 -2.39 -0.02 1.78 16 34 H 0.12 4.48 8.14 -2.39 -0.02 4.46 16 35 H 0.12 4.52 8.14 -2.40 -0.02 4.50 16 36 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -70.37 324.57 6.31 -64.06 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: 1.07 Total: 15.29 kcal Atomic # 6 Polarization: -30.83 SS G_CDS: 4.20 Total: -26.62 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: 0.29 Total: -54.67 kcal Atomic # 8 Polarization: -34.51 SS G_CDS: -0.12 Total: -34.63 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: -7.39 SS G_CDS: -1.16 Total: -8.56 kcal Total: -70.37 6.31 -64.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268974039.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.075 kcal (2) G-P(sol) polarization free energy of solvation -70.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds