Wall clock time and date at job start Tue Mar 31 2020 01:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 120.00270 * 2 1 4 4 H 1.48499 * 109.46806 * 270.00369 * 3 2 1 5 5 H 1.48496 * 109.46646 * 29.99976 * 3 2 1 6 6 H 1.48491 * 109.47265 * 150.00100 * 3 2 1 7 7 C 1.37875 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99897 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00315 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47622 * 179.97438 * 9 7 2 11 11 N 1.46501 * 109.47360 * 179.97438 * 10 9 7 12 12 C 1.34772 * 119.99973 * 180.02562 * 11 10 9 13 13 O 1.21589 * 120.00254 * 0.02562 * 12 11 10 14 14 C 1.47536 * 119.99844 * 180.02562 * 12 11 10 15 15 C 1.39707 * 120.19317 * 0.02562 * 14 12 11 16 16 C 1.37788 * 119.90585 * 179.97438 * 15 14 12 17 17 N 1.48027 * 119.84648 * 179.97438 * 16 15 14 18 18 O 1.21802 * 119.99985 * 0.02562 * 17 16 15 19 19 O 1.21795 * 120.00186 * 180.02562 * 17 16 15 20 20 C 1.38545 * 120.30620 * 359.97438 * 16 15 14 21 21 C 1.38061 * 120.38560 * 359.78517 * 20 16 15 22 22 C 1.38704 * 120.08402 * 0.46881 * 21 20 16 23 23 O 1.35655 * 120.15039 * 179.79129 * 22 21 20 24 24 H 0.96998 * 119.99641 * 359.97438 * 1 2 3 25 25 H 1.09009 * 109.47120 * 59.99688 * 9 7 2 26 26 H 1.08996 * 109.47300 * 300.00144 * 9 7 2 27 27 H 1.09003 * 109.46589 * 60.00224 * 10 9 7 28 28 H 1.08996 * 109.47181 * 300.00560 * 10 9 7 29 29 H 0.96995 * 119.99840 * 0.02562 * 11 10 9 30 30 H 1.07995 * 120.04306 * 359.95506 * 15 14 12 31 31 H 1.07998 * 119.80764 * 180.02562 * 20 16 15 32 32 H 1.08001 * 119.95291 * 180.23767 * 21 20 16 33 33 H 0.96696 * 114.00102 * 269.72337 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 7 1.5127 -4.9308 -0.0012 12 6 2.1865 -6.0980 -0.0016 13 8 3.4024 -6.0980 -0.0020 14 6 1.4488 -7.3757 -0.0016 15 6 0.0517 -7.3803 -0.0016 16 6 -0.6313 -8.5770 -0.0021 17 7 -2.1115 -8.5804 -0.0016 18 8 -2.7230 -7.5270 -0.0012 19 8 -2.7181 -9.6366 -0.0016 20 6 0.0610 -9.7771 -0.0031 21 6 1.4416 -9.7869 -0.0080 22 6 2.1454 -8.5917 -0.0023 23 8 3.5019 -8.5998 -0.0028 24 1 -0.4849 0.8401 0.0004 25 1 0.6239 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8896 27 1 2.8725 -3.6047 0.8878 28 1 2.8712 -3.6039 -0.8922 29 1 0.5427 -4.9308 -0.0005 30 1 -0.4921 -6.4473 -0.0010 31 1 -0.4824 -10.7104 -0.0039 32 1 1.9742 -10.7264 -0.0126 33 1 3.8956 -8.6023 0.8804 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273142467.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:26 Heat of formation + Delta-G solvation = -83.075750 kcal Electronic energy + Delta-G solvation = -20795.862396 eV Core-core repulsion = 17210.238041 eV Total energy + Delta-G solvation = -3585.624355 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.32745 -41.74631 -39.89152 -38.13175 -37.71977 -36.63831 -34.92300 -33.19964 -32.22030 -31.24996 -27.32644 -27.08639 -25.30195 -23.74799 -22.89381 -21.97815 -20.43978 -19.82316 -19.79929 -18.65505 -18.61800 -17.99071 -17.38344 -16.98339 -16.47971 -16.43822 -16.27415 -15.72208 -14.98468 -14.74218 -14.45241 -14.31151 -13.78777 -13.71169 -13.25012 -12.96165 -12.79544 -12.55283 -12.44145 -12.32463 -12.29101 -12.11086 -11.71173 -11.48694 -11.01724 -10.69761 -10.62465 -10.49983 -10.11470 -8.25440 -6.36599 -1.38472 -0.67056 0.08481 0.25080 1.41560 1.41902 1.47405 1.53301 1.98205 2.21897 2.41188 2.76205 3.09682 3.09876 3.20890 3.59746 3.65105 3.92003 4.24943 4.33635 4.44305 4.44957 4.50577 4.77289 4.80794 4.97754 5.13652 5.23342 5.42634 5.53443 5.75280 6.12259 6.39032 6.41328 6.54288 6.76793 7.01615 7.33264 8.86449 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.019891 B = 0.003800 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.341971 B = 7367.590266 C = 8751.922971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.965 3.035 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.547 4.547 8 H 0.062 0.938 9 C 0.019 3.981 10 C 0.142 3.858 11 N -0.715 5.715 12 C 0.552 3.448 13 O -0.554 6.554 14 C -0.177 4.177 15 C -0.006 4.006 16 C -0.076 4.076 17 N 0.032 4.968 18 O -0.207 6.207 19 O -0.141 6.141 20 C 0.000 4.000 21 C -0.131 4.131 22 C 0.229 3.771 23 O -0.482 6.482 24 H 0.266 0.734 25 H 0.007 0.993 26 H 0.009 0.991 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.406 0.594 30 H 0.156 0.844 31 H 0.193 0.807 32 H 0.203 0.797 33 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.713 -23.400 1.833 23.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.790 3.210 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.585 4.585 8 H 0.080 0.920 9 C -0.018 4.018 10 C 0.019 3.981 11 N -0.366 5.366 12 C 0.339 3.661 13 O -0.434 6.434 14 C -0.181 4.181 15 C -0.026 4.026 16 C -0.159 4.159 17 N 0.548 4.452 18 O -0.412 6.412 19 O -0.364 6.364 20 C -0.019 4.019 21 C -0.149 4.149 22 C 0.181 3.819 23 O -0.298 6.298 24 H 0.075 0.925 25 H 0.025 0.975 26 H 0.027 0.973 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.243 0.757 30 H 0.173 0.827 31 H 0.210 0.790 32 H 0.220 0.780 33 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 3.096 -23.143 1.260 23.383 hybrid contribution -0.742 1.459 0.410 1.687 sum 2.354 -21.684 1.671 21.875 Atomic orbital electron populations 1.70064 1.07635 1.28053 1.50886 1.25883 0.95751 1.03171 0.94359 0.85436 0.78668 0.78397 0.78505 1.19832 1.20626 1.18835 1.21453 0.93667 0.91748 1.51682 0.92001 1.19164 0.94312 0.91949 0.96383 1.21306 0.94972 0.81379 1.00474 1.46166 1.11076 1.05896 1.73441 1.18177 0.87156 0.83776 0.76987 1.90792 1.13897 1.87697 1.50990 1.20298 0.92373 0.94531 1.10930 1.21078 0.92905 0.98478 0.90157 1.21058 0.78454 0.97534 1.18887 1.43784 1.04163 1.00230 0.97006 1.94630 1.69483 1.21032 1.56046 1.94487 1.69779 1.20286 1.51884 1.21490 0.94411 0.97190 0.88773 1.21805 0.92190 0.99289 1.01621 1.19041 0.84716 0.90475 0.87696 1.84660 1.13573 1.95819 1.35704 0.92533 0.97494 0.97279 0.92611 0.92976 0.75735 0.82692 0.79027 0.78022 0.71045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.49 13.29 21.45 0.28 -54.21 16 2 C 0.01 0.41 5.46 84.65 0.46 0.87 16 3 Si 0.97 43.32 29.54 68.60 2.03 45.35 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 6 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 7 C -0.55 -30.21 9.11 25.60 0.23 -29.98 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.02 0.97 5.09 29.85 0.15 1.12 16 10 C 0.14 5.89 5.61 86.38 0.48 6.38 16 11 N -0.71 -24.15 5.51 -466.28 -2.57 -26.71 16 12 C 0.55 17.35 7.76 86.70 0.67 18.03 16 13 O -0.55 -20.52 15.16 16.92 0.26 -20.27 16 14 C -0.18 -4.02 5.89 -20.01 -0.12 -4.13 16 15 C -0.01 -0.13 9.04 22.52 0.20 0.07 16 16 C -0.08 -1.44 6.84 36.34 0.25 -1.19 16 17 N 0.03 0.78 4.45 -46.53 -0.21 0.57 16 18 O -0.21 -6.05 18.43 18.88 0.35 -5.70 16 19 O -0.14 -3.27 18.43 18.89 0.35 -2.92 16 20 C 0.00 0.00 9.54 22.30 0.21 0.22 16 21 C -0.13 -1.17 9.98 22.34 0.22 -0.94 16 22 C 0.23 3.82 6.72 22.84 0.15 3.97 16 23 O -0.48 -8.41 11.58 -68.78 -0.80 -9.20 16 24 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 25 H 0.01 0.35 8.14 -2.38 -0.02 0.34 16 26 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 28 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.41 12.22 6.50 -92.71 -0.60 11.62 16 30 H 0.16 3.43 5.94 -2.91 -0.02 3.41 16 31 H 0.19 1.00 7.59 -2.91 -0.02 0.98 16 32 H 0.20 0.21 8.06 -2.91 -0.02 0.19 16 33 H 0.43 3.96 9.06 -74.06 -0.67 3.29 16 Total: -1.00 -72.64 304.51 2.53 -70.10 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -0.09 Total: 8.58 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: 2.93 Total: -5.59 kcal Atomic # 7 Polarization: -77.86 SS G_CDS: -2.49 Total: -80.35 kcal Atomic # 8 Polarization: -38.25 SS G_CDS: 0.16 Total: -38.09 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -72.64 2.53 -70.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273142467.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.975 kcal (2) G-P(sol) polarization free energy of solvation -72.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds