Wall clock time and date at job start Tue Mar 31 2020 01:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46500 * 109.46877 * 2 1 4 4 C 1.33335 * 119.99730 * 281.46919 * 3 2 1 5 5 H 1.08001 * 119.99863 * 175.75024 * 4 3 2 6 6 C 1.46783 * 120.00211 * 356.02755 * 4 3 2 7 7 N 1.29316 * 119.99806 * 58.22984 * 6 4 3 8 8 Si 1.86796 * 119.99914 * 238.23621 * 6 4 3 9 9 H 1.48499 * 109.47403 * 60.00052 * 8 6 4 10 10 H 1.48507 * 109.47103 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47271 * 299.99532 * 8 6 4 12 12 C 1.34773 * 120.00514 * 101.47301 * 3 2 1 13 13 O 1.21469 * 120.00286 * 180.92878 * 12 3 2 14 14 C 1.47714 * 119.99618 * 0.93062 * 12 3 2 15 15 C 1.39618 * 120.12580 * 311.76372 * 14 12 3 16 16 C 1.38424 * 119.78587 * 179.97438 * 15 14 12 17 17 O 1.35909 * 119.98142 * 179.97438 * 16 15 14 18 18 C 1.38880 * 120.03802 * 359.97438 * 16 15 14 19 19 C 1.38267 * 120.25610 * 0.04051 * 18 16 15 20 20 N 1.48011 * 119.89318 * 179.97438 * 19 18 16 21 21 O 1.31704 * 120.00104 * 0.02562 * 20 19 18 22 22 O 1.31704 * 119.99936 * 180.02562 * 20 19 18 23 23 C 1.37981 * 120.21193 * 359.70475 * 19 18 16 24 24 H 1.08998 * 109.47289 * 15.07556 * 1 2 3 25 25 H 1.08995 * 109.46944 * 135.07886 * 1 2 3 26 26 H 1.09001 * 109.47077 * 255.07571 * 1 2 3 27 27 H 1.08993 * 109.47039 * 239.99598 * 2 1 3 28 28 H 1.08998 * 109.47043 * 119.99558 * 2 1 3 29 29 H 0.97005 * 120.00061 * 180.02562 * 7 6 4 30 30 H 1.07997 * 120.10626 * 359.95929 * 15 14 12 31 31 H 0.96701 * 113.99612 * 89.99594 * 17 16 15 32 32 H 1.08004 * 119.87082 * 180.02562 * 18 16 15 33 33 H 1.08004 * 120.01801 * 180.29601 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0240 2.0863 -1.1317 5 1 2.3190 3.1252 -1.1192 6 6 1.6237 1.4522 -2.3935 7 7 0.4486 0.9243 -2.5075 8 14 2.8115 1.4076 -3.8344 9 1 4.0416 0.6753 -3.4395 10 1 2.1715 0.7161 -4.9823 11 1 3.1659 2.7952 -4.2270 12 6 2.4618 1.9393 1.1438 13 8 2.8509 3.0900 1.1472 14 6 2.4748 1.1515 2.3933 15 6 1.3444 0.4274 2.7769 16 6 1.3645 -0.3089 3.9489 17 8 0.2662 -1.0148 4.3264 18 6 2.5063 -0.3266 4.7393 19 6 3.6266 0.3902 4.3611 20 7 4.8390 0.3661 5.2098 21 8 4.8497 -0.3377 6.3230 22 8 5.9071 1.0485 4.8519 23 6 3.6199 1.1234 3.1923 24 1 -0.3634 0.9923 -0.2673 25 1 -0.3633 -0.7276 -0.7256 26 1 -0.3633 -0.2647 0.9930 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 0.1841 0.5049 -3.3412 30 1 0.4572 0.4418 2.1613 31 1 0.2463 -1.9210 3.9895 32 1 2.5192 -0.9023 5.6530 33 1 4.4983 1.6783 2.8975 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274650328.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:16 Heat of formation + Delta-G solvation = -15.079531 kcal Electronic energy + Delta-G solvation = -21834.768642 eV Core-core repulsion = 18252.092824 eV Total energy + Delta-G solvation = -3582.675818 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.90013 -40.41799 -39.69586 -37.72797 -37.00007 -35.68964 -34.68343 -33.07807 -31.51263 -31.30443 -27.99005 -27.30441 -24.69314 -24.11657 -23.55730 -21.67614 -19.97178 -19.37505 -18.96826 -18.37224 -17.94233 -17.70185 -17.24539 -16.98192 -16.74000 -16.36595 -15.84183 -15.49981 -14.91532 -14.68507 -14.26076 -13.80747 -13.57838 -13.33791 -13.24695 -12.97081 -12.74390 -12.65055 -12.52496 -12.30787 -12.07188 -12.06741 -11.99709 -11.76350 -10.95616 -10.71235 -10.38162 -10.34871 -10.11974 -9.01718 -5.58346 -1.95533 -0.45405 -0.15811 -0.10512 1.20288 1.39146 1.41714 1.72079 2.15372 2.16879 2.57280 2.75832 2.87410 3.34332 3.44083 3.62931 3.68377 3.87937 4.04994 4.17224 4.43658 4.47493 4.54691 4.55916 4.73270 4.88267 4.90243 5.07219 5.18322 5.21460 5.48232 5.67796 5.97259 6.19399 6.66851 7.11546 7.32573 7.94950 8.16018 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.021788 B = 0.005371 C = 0.004624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.815283 B = 5211.571558 C = 6054.461186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.090 3.910 3 N -0.369 5.369 4 C -0.453 4.453 5 H 0.073 0.927 6 C 0.085 3.915 7 N -0.732 5.732 8 Si 0.942 3.058 9 H -0.271 1.271 10 H -0.253 1.253 11 H -0.274 1.274 12 C 0.376 3.624 13 O -0.662 6.662 14 C -0.064 4.064 15 C -0.083 4.083 16 C 0.142 3.858 17 O -0.479 6.479 18 C -0.074 4.074 19 C 0.006 3.994 20 N -0.012 5.012 21 O -0.139 6.139 22 O -0.230 6.230 23 C -0.044 4.044 24 H 0.050 0.950 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.304 0.696 30 H 0.168 0.832 31 H 0.425 0.575 32 H 0.188 0.812 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.607 -12.570 5.220 14.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.032 4.032 3 N -0.078 5.078 4 C -0.577 4.577 5 H 0.091 0.909 6 C -0.144 4.144 7 N -0.354 5.354 8 Si 0.763 3.237 9 H -0.196 1.196 10 H -0.176 1.176 11 H -0.199 1.199 12 C 0.172 3.828 13 O -0.557 6.557 14 C -0.069 4.069 15 C -0.103 4.103 16 C 0.096 3.904 17 O -0.293 6.293 18 C -0.094 4.094 19 C -0.080 4.080 20 N 0.465 4.535 21 O -0.345 6.345 22 O -0.409 6.409 23 C -0.065 4.065 24 H 0.070 0.930 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.105 0.895 29 H 0.118 0.882 30 H 0.185 0.815 31 H 0.287 0.713 32 H 0.205 0.795 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.304 -11.621 4.866 13.670 hybrid contribution 1.214 0.227 -0.863 1.507 sum -4.090 -11.394 4.003 12.750 Atomic orbital electron populations 1.22056 0.93286 1.03226 1.00812 1.21912 0.96954 0.82337 1.02038 1.42806 1.46548 1.11576 1.06879 1.19800 1.55523 0.97768 0.84636 0.90905 1.27324 0.94939 0.91967 1.00138 1.69423 1.15745 1.20689 1.29560 0.85868 0.80972 0.79541 0.77331 1.19627 1.17646 1.19911 1.17553 0.93396 0.87953 0.83853 1.90527 1.59630 1.20171 1.85418 1.19673 0.93595 0.97608 0.96015 1.22700 0.98308 0.93592 0.95680 1.17621 0.86166 0.95974 0.90679 1.84852 1.37311 1.31372 1.75799 1.21536 0.88644 0.97047 1.02182 1.19952 0.85272 1.08890 0.93882 1.50605 1.03582 0.97920 1.01384 1.96196 1.91257 1.37982 1.09101 1.96329 1.22277 1.43752 1.78529 1.20933 0.99376 0.95052 0.91130 0.93039 0.91102 0.91327 0.91850 0.89524 0.88227 0.81521 0.71329 0.79483 0.84598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.30 7.83 71.98 0.56 -3.74 16 2 C 0.09 3.23 4.96 86.38 0.43 3.66 16 3 N -0.37 -17.52 2.48 -634.09 -1.57 -19.09 16 4 C -0.45 -23.86 9.29 86.70 0.81 -23.05 16 5 H 0.07 4.48 7.31 -2.91 -0.02 4.46 16 6 C 0.09 3.77 4.23 87.30 0.37 4.14 16 7 N -0.73 -29.74 10.42 23.26 0.24 -29.50 16 8 Si 0.94 34.97 29.72 68.60 2.04 37.01 16 9 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 10 H -0.25 -8.18 7.11 99.48 0.71 -7.47 16 11 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 12 C 0.38 18.72 7.16 86.75 0.62 19.34 16 13 O -0.66 -40.04 16.54 -3.62 -0.06 -40.10 16 14 C -0.06 -2.42 4.88 -20.10 -0.10 -2.51 16 15 C -0.08 -2.34 7.46 22.65 0.17 -2.17 16 16 C 0.14 3.01 6.70 22.47 0.15 3.16 16 17 O -0.48 -6.93 13.50 -92.53 -1.25 -8.18 16 18 C -0.07 -1.67 9.51 22.43 0.21 -1.46 16 19 C 0.01 0.19 6.87 36.32 0.25 0.44 16 20 N -0.01 -0.41 4.98 -46.60 -0.23 -0.64 16 21 O -0.14 -4.32 19.14 3.51 0.07 -4.26 16 22 O -0.23 -8.90 19.14 3.51 0.07 -8.83 16 23 C -0.04 -1.61 9.25 22.55 0.21 -1.40 16 24 H 0.05 2.05 6.91 -2.39 -0.02 2.04 16 25 H 0.07 2.06 7.94 -2.39 -0.02 2.04 16 26 H 0.07 1.64 6.01 -2.39 -0.01 1.63 16 27 H 0.06 2.31 7.17 -2.39 -0.02 2.29 16 28 H 0.09 2.57 5.29 -2.39 -0.01 2.56 16 29 H 0.30 10.74 8.26 -92.70 -0.77 9.97 16 30 H 0.17 4.49 4.20 -2.91 -0.01 4.48 16 31 H 0.42 1.35 9.06 -74.06 -0.67 0.68 16 32 H 0.19 3.18 7.56 -2.91 -0.02 3.15 16 33 H 0.14 5.53 7.57 -2.91 -0.02 5.51 16 Total: -1.00 -69.21 292.67 3.51 -65.70 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 0.53 Total: 11.49 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: 3.68 Total: -3.59 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: -1.56 Total: -49.23 kcal Atomic # 8 Polarization: -60.20 SS G_CDS: -1.17 Total: -61.37 kcal Atomic # 14 Polarization: 34.97 SS G_CDS: 2.04 Total: 37.01 kcal Total: -69.21 3.51 -65.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274650328.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.618 kcal (2) G-P(sol) polarization free energy of solvation -69.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds