Wall clock time and date at job start Tue Mar 31 2020 01:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36877 * 120.00529 * 2 1 4 4 H 1.08007 * 120.00321 * 185.40484 * 3 2 1 5 5 C 1.39042 * 119.99843 * 5.40648 * 3 2 1 6 6 N 1.31364 * 120.00216 * 40.30512 * 5 3 2 7 7 Si 1.86801 * 119.99891 * 220.30464 * 5 3 2 8 8 H 1.48508 * 109.47010 * 60.00013 * 7 5 3 9 9 H 1.48505 * 109.47286 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47189 * 300.00124 * 7 5 3 11 11 C 1.34780 * 119.99481 * 179.97438 * 2 1 3 12 12 O 1.21597 * 119.99989 * 195.17733 * 11 2 1 13 13 C 1.47643 * 120.00001 * 15.18497 * 11 2 1 14 14 C 1.40073 * 120.57529 * 336.78508 * 13 11 2 15 15 C 1.38329 * 118.29928 * 179.76345 * 14 13 11 16 16 C 1.50704 * 120.32761 * 180.26014 * 15 14 13 17 17 C 1.53004 * 117.49749 * 188.92880 * 16 15 14 18 18 C 1.53004 * 117.50176 * 120.30493 * 16 15 14 19 19 C 1.38368 * 119.34812 * 0.55992 * 15 14 13 20 20 N 1.31920 * 121.11906 * 359.68167 * 19 15 14 21 21 C 1.31814 * 121.86663 * 0.02562 * 20 19 15 22 22 Cl 1.73605 * 119.74186 * 180.02562 * 21 20 19 23 23 H 1.08996 * 109.47607 * 247.29613 * 1 2 3 24 24 H 1.09002 * 109.46465 * 7.28902 * 1 2 3 25 25 H 1.09000 * 109.47142 * 127.28506 * 1 2 3 26 26 H 0.97005 * 120.00459 * 179.97438 * 6 5 3 27 27 H 1.08008 * 120.84818 * 0.02562 * 14 13 11 28 28 H 1.09005 * 115.54879 * 334.63319 * 16 15 14 29 29 H 1.08998 * 117.49984 * 359.97438 * 17 16 15 30 30 H 1.08997 * 117.49697 * 145.02612 * 17 16 15 31 31 H 1.08997 * 117.50078 * 214.98083 * 18 16 15 32 32 H 1.09010 * 117.49291 * 359.97438 * 18 16 15 33 33 H 1.08002 * 119.44226 * 179.69674 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1853 0.0000 4 1 3.2259 1.1874 -0.0881 5 6 1.4590 2.3868 0.1135 6 7 0.4431 2.4851 0.9405 7 14 1.9759 3.8614 -0.9102 8 1 1.8729 3.5232 -2.3526 9 1 1.0859 5.0110 -0.6071 10 1 3.3793 4.2221 -0.5854 11 6 2.1388 -1.1673 0.0005 12 8 3.3229 -1.1856 0.2762 13 6 1.4391 -2.4237 -0.3338 14 6 0.0506 -2.5282 -0.1818 15 6 -0.5572 -3.7256 -0.5138 16 6 -2.0491 -3.8864 -0.3735 17 6 -2.6285 -5.2906 -0.5559 18 6 -2.8446 -4.2278 -1.6351 19 6 0.2188 -4.7764 -0.9701 20 7 1.5259 -4.6529 -1.0992 21 6 2.1516 -3.5315 -0.8018 22 17 3.8741 -3.4295 -0.9933 23 1 -0.3634 -0.3966 0.9480 24 1 -0.3632 1.0194 -0.1304 25 1 -0.3633 -0.6225 -0.8176 26 1 -0.0384 3.3234 1.0200 27 1 -0.5312 -1.6937 0.1813 28 1 -2.5249 -3.2367 0.3611 29 1 -1.9308 -6.0981 -0.7778 30 1 -3.4858 -5.5651 0.0588 31 1 -3.8439 -3.8030 -1.7303 32 1 -2.2889 -4.3357 -2.5667 33 1 -0.2535 -5.7136 -1.2250 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279806323.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:03 Heat of formation + Delta-G solvation = 67.732961 kcal Electronic energy + Delta-G solvation = -19450.886691 eV Core-core repulsion = 16312.511057 eV Total energy + Delta-G solvation = -3138.375634 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.42126 -38.33810 -37.10924 -35.87860 -34.91764 -32.92200 -31.49310 -30.35932 -26.95909 -25.57627 -24.07524 -23.27113 -22.39678 -21.41959 -19.22758 -17.51686 -16.78309 -16.55529 -16.22197 -15.33405 -14.97439 -14.63375 -14.43126 -14.16716 -13.60440 -13.35572 -13.05726 -12.51227 -12.09275 -11.91107 -11.72842 -11.65953 -11.49760 -11.38431 -10.68952 -10.66079 -10.63653 -10.53255 -10.44298 -10.28823 -9.45048 -9.37122 -8.98586 -8.36278 -8.31726 -7.99940 -6.77257 -3.84418 0.97970 1.36137 2.39070 3.04877 3.15089 3.19317 3.43849 3.83057 3.93383 4.22528 4.41111 4.54324 4.70910 4.79181 4.84061 4.88915 5.07230 5.11698 5.40704 5.43201 5.48165 5.70186 5.81329 5.91082 5.96041 6.04479 6.20612 6.29814 6.35660 6.69383 6.86614 7.32308 7.84579 7.98699 8.25702 8.97524 9.17568 9.82514 10.26768 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.016633 B = 0.006282 C = 0.004794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.028658 B = 4456.076305 C = 5838.739695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.419 5.419 3 C -0.314 4.314 4 H 0.114 0.886 5 C 0.043 3.957 6 N -0.830 5.830 7 Si 0.908 3.092 8 H -0.270 1.270 9 H -0.283 1.283 10 H -0.268 1.268 11 C 0.461 3.539 12 O -0.567 6.567 13 C -0.122 4.122 14 C -0.087 4.087 15 C -0.110 4.110 16 C -0.109 4.109 17 C -0.177 4.177 18 C -0.169 4.169 19 C 0.101 3.899 20 N -0.481 5.481 21 C 0.197 3.803 22 Cl -0.006 7.006 23 H 0.052 0.948 24 H 0.108 0.892 25 H 0.048 0.952 26 H 0.275 0.725 27 H 0.181 0.819 28 H 0.118 0.882 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.026 -9.518 -3.780 13.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.135 5.135 3 C -0.440 4.440 4 H 0.131 0.869 5 C -0.165 4.165 6 N -0.465 5.465 7 Si 0.732 3.268 8 H -0.195 1.195 9 H -0.208 1.208 10 H -0.192 1.192 11 C 0.251 3.749 12 O -0.452 6.452 13 C -0.129 4.129 14 C -0.113 4.113 15 C -0.113 4.113 16 C -0.128 4.128 17 C -0.214 4.214 18 C -0.206 4.206 19 C -0.057 4.057 20 N -0.192 5.192 21 C 0.031 3.969 22 Cl 0.023 6.977 23 H 0.070 0.930 24 H 0.126 0.874 25 H 0.066 0.934 26 H 0.086 0.914 27 H 0.197 0.803 28 H 0.136 0.864 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.115 0.885 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -7.921 -10.019 -3.868 13.345 hybrid contribution -0.370 1.351 -0.073 1.403 sum -8.291 -8.667 -3.941 12.625 Atomic orbital electron populations 1.22512 0.82276 1.05545 0.98061 1.43593 1.05091 1.05065 1.59726 1.19754 0.94374 0.81187 1.48703 0.86855 1.25254 0.96371 0.99235 0.95640 1.70217 1.21644 1.28035 1.26620 0.86278 0.79378 0.79698 0.81400 1.19534 1.20799 1.19246 1.17318 0.87643 0.82089 0.87876 1.90678 1.15616 1.85083 1.53786 1.20945 0.93820 0.96574 1.01596 1.23175 0.93803 0.98451 0.95824 1.20083 0.94861 0.94711 1.01611 1.20896 0.90368 0.99943 1.01591 1.23064 1.03232 0.92121 1.02937 1.23049 1.01227 1.02920 0.93367 1.22459 0.87859 0.98441 0.96929 1.67039 1.10841 1.24561 1.16732 1.21700 0.88377 0.89769 0.97091 1.98410 1.06503 1.97634 1.95193 0.93036 0.87424 0.93417 0.91422 0.80300 0.86446 0.88360 0.88271 0.88264 0.88534 0.82636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.22 7.81 59.84 0.47 1.69 16 2 N -0.42 -10.41 3.02 -124.61 -0.38 -10.78 16 3 C -0.31 -8.36 9.29 -15.00 -0.14 -8.50 16 4 H 0.11 3.21 7.51 -52.48 -0.39 2.82 16 5 C 0.04 1.06 4.56 -17.45 -0.08 0.98 16 6 N -0.83 -20.39 11.25 55.50 0.62 -19.77 16 7 Si 0.91 19.08 29.69 -169.99 -5.05 14.03 16 8 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 9 H -0.28 -5.76 7.11 56.52 0.40 -5.35 16 10 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 11 C 0.46 11.47 7.31 -12.42 -0.09 11.38 16 12 O -0.57 -15.72 14.20 5.28 0.07 -15.64 16 13 C -0.12 -2.57 5.80 -104.79 -0.61 -3.17 16 14 C -0.09 -1.49 7.74 -38.86 -0.30 -1.79 16 15 C -0.11 -1.59 5.62 -104.54 -0.59 -2.18 16 16 C -0.11 -1.18 6.06 -91.77 -0.56 -1.73 16 17 C -0.18 -1.50 9.87 -26.73 -0.26 -1.77 16 18 C -0.17 -1.52 10.17 -26.73 -0.27 -1.79 16 19 C 0.10 1.49 10.46 -17.47 -0.18 1.31 16 20 N -0.48 -8.73 10.33 -9.99 -0.10 -8.84 16 21 C 0.20 4.02 7.31 -16.98 -0.12 3.90 16 22 Cl -0.01 -0.13 26.49 -51.86 -1.37 -1.50 16 23 H 0.05 1.00 6.92 -51.93 -0.36 0.64 16 24 H 0.11 2.35 5.14 -51.93 -0.27 2.08 16 25 H 0.05 0.85 5.68 -51.93 -0.29 0.56 16 26 H 0.28 6.28 8.31 -40.82 -0.34 5.94 16 27 H 0.18 2.88 3.32 -54.15 -0.18 2.70 16 28 H 0.12 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.10 0.79 6.19 -51.93 -0.32 0.47 16 30 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.10 0.90 8.14 -51.92 -0.42 0.48 16 33 H 0.16 1.77 6.02 -52.49 -0.32 1.46 16 LS Contribution 289.94 15.07 4.37 4.37 Total: -1.00 -29.71 289.94 -7.52 -37.24 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -2.96 Total: 2.57 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -2.74 Total: -1.67 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 0.15 Total: -39.39 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: 0.07 Total: -15.64 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.05 Total: 14.03 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -1.37 Total: -1.50 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.71 -7.52 -37.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279806323.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.970 kcal (2) G-P(sol) polarization free energy of solvation -29.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds