Wall clock time and date at job start Tue Mar 31 2020 01:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86791 * 120.00143 * 2 1 4 4 H 1.48497 * 109.47479 * 269.99920 * 3 2 1 5 5 H 1.48493 * 109.47502 * 30.00342 * 3 2 1 6 6 H 1.48505 * 109.46931 * 150.00198 * 3 2 1 7 7 C 1.37879 * 119.99309 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99116 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00534 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47219 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.46889 * 180.02562 * 10 9 7 12 12 O 1.21293 * 120.00190 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99953 * 180.02562 * 11 10 9 14 14 C 1.40121 * 120.00260 * 185.53422 * 13 11 10 15 15 C 1.38726 * 120.08882 * 24.80482 * 14 13 11 16 16 C 1.38191 * 119.98255 * 179.97438 * 15 14 13 17 17 N 1.48032 * 119.91464 * 180.02562 * 16 15 14 18 18 O 1.21796 * 120.00021 * 359.97438 * 17 16 15 19 19 O 1.21806 * 119.99614 * 179.97438 * 17 16 15 20 20 C 1.38276 * 120.16825 * 359.97438 * 16 15 14 21 21 C 1.38244 * 120.17665 * 359.72902 * 20 16 15 22 22 C 1.38553 * 120.01292 * 0.54689 * 21 20 16 23 23 O 1.35971 * 120.08006 * 179.72302 * 22 21 20 24 24 H 0.97003 * 119.99627 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.46929 * 60.00390 * 9 7 2 26 26 H 1.09000 * 109.47049 * 300.00752 * 9 7 2 27 27 H 1.09002 * 109.47007 * 60.00246 * 10 9 7 28 28 H 1.08994 * 109.47308 * 299.99875 * 10 9 7 29 29 H 0.97000 * 119.99695 * 5.52834 * 13 11 10 30 30 H 1.08001 * 120.00339 * 359.95618 * 15 14 13 31 31 H 1.07999 * 119.91045 * 180.02562 * 20 16 15 32 32 H 1.07999 * 119.99043 * 180.28104 * 21 20 16 33 33 H 0.96697 * 114.00589 * 269.72775 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4915 -4.9672 -0.0012 12 8 0.2785 -4.9671 -0.0021 13 7 2.1653 -6.1345 -0.0008 14 6 1.4696 -7.3451 -0.1184 15 6 0.2254 -7.3756 -0.7311 16 6 -0.4585 -8.5708 -0.8464 17 7 -1.7859 -8.6017 -1.5011 18 8 -2.2740 -7.5745 -1.9368 19 8 -2.3898 -9.6545 -1.6039 20 6 0.0943 -9.7382 -0.3528 21 6 1.3365 -9.7166 0.2536 22 6 2.0262 -8.5214 0.3783 23 8 3.2455 -8.4977 0.9796 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 -0.8903 26 1 0.6245 -2.5570 0.8896 27 1 2.8717 -3.6044 0.8895 28 1 2.8717 -3.6045 -0.8905 29 1 3.1318 -6.1364 0.0809 30 1 -0.2087 -6.4653 -1.1177 31 1 -0.4436 -10.6700 -0.4455 32 1 1.7674 -10.6309 0.6341 33 1 3.2107 -8.3444 1.9337 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291814582.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:32 Heat of formation + Delta-G solvation = -58.888262 kcal Electronic energy + Delta-G solvation = -20954.267341 eV Core-core repulsion = 17369.691834 eV Total energy + Delta-G solvation = -3584.575507 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.21195 -40.97701 -39.17862 -37.24088 -36.53761 -34.97456 -33.66034 -31.53653 -31.24709 -29.90478 -26.35939 -25.97592 -23.82522 -22.63133 -21.66439 -20.10377 -19.52016 -19.08832 -18.64194 -17.52503 -17.26697 -16.78244 -16.19242 -16.16502 -15.58041 -15.18649 -14.54349 -14.35012 -13.79280 -13.51919 -13.26790 -13.00816 -12.53624 -12.29310 -11.64641 -11.47208 -11.31342 -11.23299 -11.10392 -11.02330 -10.91033 -10.68635 -10.13814 -9.88973 -9.66924 -9.42565 -9.21030 -8.54723 -8.41000 -6.05004 -4.10678 -0.33896 0.63078 1.14740 1.33711 2.58743 2.82746 3.03432 3.28159 3.34827 3.36592 3.48715 4.12520 4.38675 4.40960 4.54428 4.65025 4.99269 5.24599 5.30332 5.32687 5.49982 5.60503 5.76770 5.95276 5.98519 6.24483 6.36687 6.63215 6.96101 7.26662 7.61751 7.64154 7.68861 7.93901 8.13102 8.31379 8.96611 9.53859 11.05759 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.022550 B = 0.003801 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.366030 B = 7365.152565 C = 8515.518045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.060 3.940 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.532 4.532 8 H 0.057 0.943 9 C 0.035 3.965 10 C -0.127 4.127 11 C 0.507 3.493 12 O -0.503 6.503 13 N -0.675 5.675 14 C 0.144 3.856 15 C -0.063 4.063 16 C -0.030 4.030 17 N 0.029 4.971 18 O -0.146 6.146 19 O -0.166 6.166 20 C -0.070 4.070 21 C -0.121 4.121 22 C 0.117 3.883 23 O -0.487 6.487 24 H 0.262 0.738 25 H 0.026 0.974 26 H 0.025 0.975 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.420 0.580 30 H 0.183 0.817 31 H 0.156 0.844 32 H 0.155 0.845 33 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.739 -20.516 2.272 21.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.570 4.570 8 H 0.075 0.925 9 C -0.002 4.002 10 C -0.167 4.167 11 C 0.298 3.702 12 O -0.376 6.376 13 N -0.321 5.321 14 C 0.046 3.954 15 C -0.085 4.085 16 C -0.113 4.113 17 N 0.549 4.451 18 O -0.365 6.365 19 O -0.380 6.380 20 C -0.090 4.090 21 C -0.141 4.141 22 C 0.069 3.931 23 O -0.299 6.299 24 H 0.072 0.928 25 H 0.045 0.955 26 H 0.044 0.956 27 H 0.105 0.895 28 H 0.107 0.893 29 H 0.257 0.743 30 H 0.200 0.800 31 H 0.174 0.826 32 H 0.172 0.828 33 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 6.580 -20.361 2.033 21.495 hybrid contribution 0.492 0.955 0.401 1.147 sum 7.072 -19.406 2.435 20.798 Atomic orbital electron populations 1.69989 1.06078 1.26822 1.49627 1.25019 0.94836 0.99314 0.95082 0.86567 0.79721 0.83369 0.78156 1.20585 1.21153 1.19877 1.21147 0.92926 0.90803 1.52138 0.92506 1.18951 0.93091 0.89246 0.98931 1.21961 1.00949 0.90528 1.03241 1.22151 0.88939 0.85423 0.73682 1.90687 1.14310 1.86890 1.45682 1.44028 1.11481 1.03423 1.73168 1.17931 0.92725 0.86654 0.98124 1.21278 0.93558 0.98771 0.94861 1.20921 0.86417 0.96720 1.07260 1.43536 1.02249 1.00430 0.98902 1.94625 1.69764 1.23068 1.49008 1.94501 1.61606 1.19951 1.61942 1.20822 0.95189 0.97394 0.95621 1.21155 0.93340 0.98322 1.01263 1.18391 0.86301 0.91348 0.97050 1.84805 1.23823 1.94370 1.26865 0.92778 0.95512 0.95635 0.89508 0.89327 0.74291 0.80037 0.82628 0.82751 0.74192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.53 -14.41 9.11 -34.44 -0.31 -14.72 16 8 H 0.06 1.44 7.74 -52.49 -0.41 1.04 16 9 C 0.04 0.89 4.26 -27.89 -0.12 0.77 16 10 C -0.13 -2.28 5.64 -27.88 -0.16 -2.44 16 11 C 0.51 8.55 7.64 -10.98 -0.08 8.46 16 12 O -0.50 -10.54 13.15 5.55 0.07 -10.47 16 13 N -0.67 -8.22 5.29 -9.75 -0.05 -8.27 16 14 C 0.14 1.75 6.45 -83.50 -0.54 1.21 16 15 C -0.06 -0.91 8.23 -39.42 -0.32 -1.24 16 16 C -0.03 -0.39 6.85 -79.94 -0.55 -0.94 16 17 N 0.03 0.45 4.45 33.96 0.15 0.60 16 18 O -0.15 -2.58 18.44 -29.46 -0.54 -3.12 16 19 O -0.17 -2.48 18.44 -29.46 -0.54 -3.03 16 20 C -0.07 -0.67 9.55 -39.57 -0.38 -1.04 16 21 C -0.12 -0.92 9.98 -39.46 -0.39 -1.32 16 22 C 0.12 1.05 6.72 -39.07 -0.26 0.79 16 23 O -0.49 -3.22 12.92 -19.65 -0.25 -3.48 16 24 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 26 H 0.03 0.70 8.10 -51.93 -0.42 0.28 16 27 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 28 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 29 H 0.42 3.79 8.35 -40.82 -0.34 3.45 16 30 H 0.18 3.18 5.33 -52.49 -0.28 2.90 16 31 H 0.16 1.17 7.60 -52.49 -0.40 0.77 16 32 H 0.15 0.70 8.06 -52.49 -0.42 0.27 16 33 H 0.40 0.99 9.06 45.56 0.41 1.41 16 LS Contribution 303.65 15.07 4.58 4.58 Total: -1.00 -34.35 303.65 -6.35 -40.70 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -2.26 Total: 1.25 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -3.22 Total: -8.89 kcal Atomic # 7 Polarization: -34.41 SS G_CDS: 0.84 Total: -33.57 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -1.27 Total: -20.09 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -34.35 -6.35 -40.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291814582.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.190 kcal (2) G-P(sol) polarization free energy of solvation -34.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds