Wall clock time and date at job start Tue Mar 31 2020 01:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50699 * 119.99854 * 2 1 4 4 N 1.46503 * 109.47148 * 125.00575 * 3 2 1 5 5 C 1.46504 * 119.99481 * 263.21929 * 4 3 2 6 6 C 1.50696 * 109.47062 * 269.99452 * 5 4 3 7 7 H 1.08001 * 119.99722 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99946 * 179.97438 * 6 5 4 9 9 N 1.31506 * 119.99881 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99709 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47097 * 60.00735 * 10 8 6 12 12 H 1.48501 * 109.46535 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47186 * 300.00407 * 10 8 6 14 14 C 1.34773 * 120.00417 * 83.21466 * 4 3 2 15 15 O 1.21693 * 120.00252 * 183.88555 * 14 4 3 16 16 C 1.46658 * 119.99712 * 3.88363 * 14 4 3 17 17 C 1.36549 * 125.98490 * 173.42191 * 16 14 4 18 18 C 1.40361 * 106.70699 * 180.02562 * 17 16 14 19 19 C 1.35131 * 107.11580 * 0.02562 * 18 17 16 20 20 N 1.48027 * 125.61522 * 179.73614 * 19 18 17 21 21 O 1.21797 * 120.00320 * 359.97438 * 20 19 18 22 22 O 1.21800 * 120.00005 * 180.02562 * 20 19 18 23 23 O 1.33930 * 108.76913 * 359.97438 * 19 18 17 24 24 H 1.07996 * 120.00446 * 359.97438 * 1 2 3 25 25 H 1.08004 * 119.99878 * 180.02562 * 1 2 3 26 26 H 1.08003 * 120.00106 * 180.02562 * 2 1 3 27 27 H 1.08996 * 109.47055 * 4.99911 * 3 2 1 28 28 H 1.09001 * 109.47076 * 245.00002 * 3 2 1 29 29 H 1.08998 * 109.47535 * 29.99795 * 5 4 3 30 30 H 1.09005 * 109.47067 * 149.99492 * 5 4 3 31 31 H 0.97002 * 119.99935 * 179.97438 * 9 8 6 32 32 H 1.08001 * 126.64507 * 359.97438 * 17 16 14 33 33 H 1.07998 * 126.44405 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.6110 1.9979 2.3788 6 6 3.0302 3.4444 2.3252 7 1 3.5313 3.8291 1.4492 8 6 2.7731 4.2768 3.3939 9 7 2.1625 3.8083 4.4602 10 14 3.2922 6.0700 3.3270 11 1 2.6207 6.7373 2.1829 12 1 2.9043 6.7450 4.5915 13 1 4.7647 6.1529 3.1536 14 6 4.2017 0.7438 1.0246 15 8 4.9464 0.7042 1.9864 16 6 4.6188 0.1516 -0.2506 17 6 5.8535 -0.3590 -0.5324 18 6 5.8084 -0.8152 -1.8590 19 6 4.5640 -0.5658 -2.3232 20 7 4.0726 -0.8794 -3.6838 21 8 4.8145 -1.4075 -4.4926 22 8 2.9266 -0.6085 -3.9949 23 8 3.8502 0.0166 -1.3511 24 1 -0.5401 0.9352 0.0004 25 1 -0.5400 -0.9354 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3585 2.1316 0.0895 28 1 2.6212 1.4026 -0.9314 29 1 1.5301 1.9374 2.5063 30 1 3.1037 1.5077 3.2185 31 1 1.9820 4.3938 5.2122 32 1 6.7009 -0.4024 0.1358 33 1 6.6162 -1.2785 -2.4060 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292539453.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:07 Heat of formation + Delta-G solvation = 4.031330 kcal Electronic energy + Delta-G solvation = -21732.917011 eV Core-core repulsion = 18151.069902 eV Total energy + Delta-G solvation = -3581.847109 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.65594 -43.17931 -40.80545 -37.97630 -37.64792 -35.23226 -34.83447 -33.87838 -32.44393 -29.95302 -28.04642 -27.11325 -25.41947 -23.49434 -23.37725 -21.64262 -21.03432 -20.67125 -19.92326 -19.25975 -18.79406 -18.62242 -17.69219 -17.47740 -16.40495 -16.24936 -15.95209 -15.52399 -14.99402 -14.63287 -14.60586 -14.39173 -14.14605 -13.43534 -13.16525 -13.02581 -12.95222 -12.68993 -12.63048 -12.52810 -12.37384 -12.27810 -11.79123 -11.72006 -11.43690 -10.68468 -10.63643 -10.44159 -9.76411 -8.27812 -6.43038 -1.52516 -0.72166 -0.13012 0.81543 1.16594 1.35693 1.38187 1.40573 1.48467 1.78987 2.14852 2.37288 3.02949 3.12595 3.19392 3.55541 3.82015 3.92261 4.04317 4.28500 4.38169 4.60564 4.71198 4.76518 4.91885 4.93789 5.03191 5.10390 5.31039 5.58450 5.65102 5.75959 5.94511 6.26057 6.30445 6.61666 6.83924 7.27748 8.79814 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.021769 B = 0.004844 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.905122 B = 5779.013422 C = 6205.526498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.187 4.187 3 C 0.132 3.868 4 N -0.576 5.576 5 C 0.262 3.738 6 C -0.552 4.552 7 H 0.056 0.944 8 C 0.016 3.984 9 N -0.923 5.923 10 Si 0.966 3.034 11 H -0.264 1.264 12 H -0.278 1.278 13 H -0.275 1.275 14 C 0.578 3.422 15 O -0.544 6.544 16 C 0.005 3.995 17 C -0.124 4.124 18 C -0.052 4.052 19 C -0.001 4.001 20 N 0.067 4.933 21 O -0.098 6.098 22 O -0.176 6.176 23 O -0.139 6.139 24 H 0.107 0.893 25 H 0.120 0.880 26 H 0.100 0.900 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.032 0.968 30 H 0.014 0.986 31 H 0.270 0.730 32 H 0.206 0.794 33 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.899 -9.362 -13.839 17.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.206 4.206 3 C 0.010 3.990 4 N -0.305 5.305 5 C 0.142 3.858 6 C -0.590 4.590 7 H 0.074 0.926 8 C -0.184 4.184 9 N -0.561 5.561 10 Si 0.790 3.210 11 H -0.188 1.188 12 H -0.203 1.203 13 H -0.200 1.200 14 C 0.364 3.636 15 O -0.424 6.424 16 C -0.050 4.050 17 C -0.145 4.145 18 C -0.072 4.072 19 C -0.134 4.134 20 N 0.588 4.412 21 O -0.322 6.322 22 O -0.384 6.384 23 O -0.035 6.035 24 H 0.125 0.875 25 H 0.138 0.862 26 H 0.119 0.881 27 H 0.112 0.888 28 H 0.109 0.891 29 H 0.050 0.950 30 H 0.032 0.968 31 H 0.079 0.921 32 H 0.223 0.777 33 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 4.005 -9.019 -12.487 15.916 hybrid contribution -0.137 0.826 0.033 0.838 sum 3.868 -8.194 -12.454 15.401 Atomic orbital electron populations 1.24091 0.95069 1.03396 0.96854 1.23103 0.96985 0.97266 1.03206 1.20985 0.92686 0.97273 0.88034 1.48287 1.14161 1.51396 1.16615 1.18980 0.95385 0.91242 0.80231 1.21598 1.39611 0.95132 1.02674 0.92625 1.25779 0.94615 1.03525 0.94492 1.70022 1.41773 1.37957 1.06394 0.85486 0.78698 0.78796 0.77981 1.18820 1.20280 1.20009 1.16939 0.82631 0.79187 0.84867 1.90879 1.53781 1.60696 1.37044 1.22865 0.92229 1.04211 0.85696 1.22482 0.97381 0.98278 0.96363 1.22244 0.94473 0.96427 0.94093 1.23007 0.92666 1.13226 0.84540 1.42241 1.00719 0.98680 0.99605 1.94577 1.54875 1.40842 1.41947 1.94674 1.03117 1.57701 1.82932 1.84357 1.39304 1.61131 1.18689 0.87478 0.86217 0.88147 0.88759 0.89060 0.95015 0.96819 0.92147 0.77736 0.75518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.95 14.32 67.79 0.97 -2.98 16 2 C -0.19 -5.53 8.95 25.65 0.23 -5.30 16 3 C 0.13 4.47 5.45 85.63 0.47 4.94 16 4 N -0.58 -24.18 2.46 -835.24 -2.05 -26.24 16 5 C 0.26 13.48 5.16 85.63 0.44 13.92 16 6 C -0.55 -30.38 9.39 25.60 0.24 -30.14 16 7 H 0.06 3.02 7.81 -2.91 -0.02 3.00 16 8 C 0.02 0.89 5.46 84.66 0.46 1.35 16 9 N -0.92 -53.46 13.29 21.45 0.28 -53.18 16 10 Si 0.97 43.07 29.54 68.60 2.03 45.09 16 11 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 12 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 13 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 14 C 0.58 23.22 7.57 86.44 0.65 23.88 16 15 O -0.54 -25.59 16.43 -4.33 -0.07 -25.67 16 16 C 0.01 0.15 6.74 24.07 0.16 0.32 16 17 C -0.12 -2.67 10.63 22.39 0.24 -2.43 16 18 C -0.05 -0.87 10.53 22.07 0.23 -0.63 16 19 C 0.00 -0.03 8.23 81.21 0.67 0.64 16 20 N 0.07 1.67 4.45 -154.81 -0.69 0.98 16 21 O -0.10 -2.18 19.00 18.89 0.36 -1.82 16 22 O -0.18 -5.01 19.25 21.80 0.42 -4.59 16 23 O -0.14 -3.89 6.44 0.06 0.00 -3.89 16 24 H 0.11 2.58 7.84 -2.91 -0.02 2.56 16 25 H 0.12 2.48 8.06 -2.91 -0.02 2.46 16 26 H 0.10 2.95 7.83 -2.91 -0.02 2.93 16 27 H 0.09 3.23 7.67 -2.39 -0.02 3.21 16 28 H 0.09 2.92 5.42 -2.39 -0.01 2.91 16 29 H 0.03 1.67 8.07 -2.39 -0.02 1.65 16 30 H 0.01 0.80 7.37 -2.38 -0.02 0.78 16 31 H 0.27 14.69 8.31 -92.71 -0.77 13.91 16 32 H 0.21 3.56 8.06 -2.91 -0.02 3.54 16 33 H 0.23 1.74 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -66.46 309.10 6.19 -60.27 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: 1.14 Total: 5.47 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: 4.77 Total: 3.56 kcal Atomic # 7 Polarization: -75.98 SS G_CDS: -2.46 Total: -78.44 kcal Atomic # 8 Polarization: -36.67 SS G_CDS: 0.71 Total: -35.96 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.09 kcal Total: -66.46 6.19 -60.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292539453.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.303 kcal (2) G-P(sol) polarization free energy of solvation -66.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds