Wall clock time and date at job start Tue Mar 31 2020 01:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40056 * 125.87719 * 2 1 4 4 C 1.30272 * 109.68623 * 179.97438 * 3 2 1 5 5 C 1.41132 * 108.47297 * 359.76906 * 4 3 2 6 6 C 1.36314 * 125.87604 * 180.02562 * 2 1 3 7 7 N 1.33225 * 134.60929 * 0.02562 * 6 2 1 8 8 C 1.31522 * 120.70075 * 179.97438 * 7 6 2 9 9 N 1.32089 * 122.65347 * 359.97438 * 8 7 6 10 10 C 1.32948 * 121.18387 * 0.02562 * 9 8 7 11 11 S 1.76208 * 120.81948 * 179.97438 * 10 9 8 12 12 C 1.80998 * 99.99889 * 359.97438 * 11 10 9 13 13 C 1.52996 * 109.47161 * 179.97438 * 12 11 10 14 14 H 1.09004 * 109.47066 * 60.00373 * 13 12 11 15 15 O 1.42903 * 109.47446 * 300.00249 * 13 12 11 16 16 C 1.50702 * 109.47159 * 180.02562 * 13 12 11 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 13 12 18 18 C 1.37884 * 119.99942 * 179.72211 * 16 13 12 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 13 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 13 21 21 H 1.48504 * 109.47196 * 60.00645 * 20 18 16 22 22 H 1.48504 * 109.46887 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47679 * 300.00280 * 20 18 16 24 24 H 1.08996 * 109.47021 * 269.99882 * 1 2 3 25 25 H 1.09001 * 109.46936 * 29.99769 * 1 2 3 26 26 H 1.09002 * 109.47301 * 150.00130 * 1 2 3 27 27 H 1.08003 * 125.76204 * 180.02562 * 4 3 2 28 28 H 1.07999 * 118.67022 * 180.02562 * 8 7 6 29 29 H 1.09004 * 109.46826 * 60.00137 * 12 11 10 30 30 H 1.09000 * 109.47766 * 300.00468 * 12 11 10 31 31 H 0.96697 * 113.99557 * 300.00558 * 15 13 12 32 32 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2858 1.1348 0.0000 4 6 3.5369 0.7716 0.0005 5 6 3.5931 -0.6386 0.0063 6 6 2.2639 -1.1045 -0.0005 7 7 2.0437 -2.4185 -0.0015 8 6 3.0480 -3.2676 -0.0022 9 7 4.3103 -2.8786 -0.0025 10 6 4.6331 -1.5889 -0.0016 11 16 6.3203 -1.0806 -0.0013 12 6 7.1354 -2.6966 -0.0018 13 6 8.6530 -2.5024 -0.0023 14 1 8.9484 -1.9467 0.8877 15 8 9.0396 -1.7735 -1.1691 16 6 9.3316 -3.8479 -0.0033 17 1 8.7398 -4.7513 -0.0040 18 6 10.7083 -3.9257 -0.0097 19 7 11.4290 -2.8256 -0.0092 20 14 11.5494 -5.5935 -0.0187 21 1 11.1420 -6.3468 -1.2319 22 1 13.0224 -5.4049 -0.0241 23 1 11.1527 -6.3547 1.1931 24 1 -0.3633 0.0000 1.0276 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5138 27 1 4.3874 1.4372 0.0011 28 1 2.8318 -4.3258 -0.0035 29 1 6.8403 -3.2521 -0.8920 30 1 6.8402 -3.2528 0.8879 31 1 8.8075 -2.2098 -2.0002 32 1 12.3975 -2.8804 -0.0133 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330723607.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:02 Heat of formation + Delta-G solvation = 44.256298 kcal Electronic energy + Delta-G solvation = -18587.124568 eV Core-core repulsion = 15482.067367 eV Total energy + Delta-G solvation = -3105.057201 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.07163 -39.95724 -37.88017 -35.32991 -34.25904 -33.71920 -31.80243 -31.55791 -28.15933 -27.42985 -25.98353 -24.48750 -23.13893 -22.19944 -19.48925 -19.17216 -19.09198 -17.98591 -17.21373 -16.67387 -16.47316 -16.18287 -15.93226 -15.61703 -15.26030 -15.17354 -15.09187 -14.05738 -13.60005 -13.56361 -13.44282 -13.22983 -12.79639 -12.74729 -12.72529 -12.46744 -12.10472 -11.97465 -11.64844 -11.08511 -10.69323 -10.60892 -10.38701 -10.27566 -9.97927 -8.78611 -8.14003 -6.40221 -0.70183 0.06088 0.33756 0.99595 1.21830 1.24629 1.46000 1.46339 1.54724 2.42149 2.59277 2.94949 3.05003 3.12939 3.40147 3.64263 3.74756 4.15366 4.20958 4.28980 4.33954 4.35629 4.37466 4.61500 4.93766 5.01377 5.16544 5.41873 5.54982 5.68552 5.87098 6.00624 6.21855 6.68841 6.96395 7.31784 7.49352 8.90264 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.040830 B = 0.003773 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.608062 B = 7419.808569 C = 8010.625629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.385 5.385 3 N -0.255 5.255 4 C 0.111 3.889 5 C -0.288 4.288 6 C 0.335 3.665 7 N -0.556 5.556 8 C 0.358 3.642 9 N -0.573 5.573 10 C 0.234 3.766 11 S -0.001 6.001 12 C -0.105 4.105 13 C 0.243 3.757 14 H 0.034 0.966 15 O -0.572 6.572 16 C -0.583 4.583 17 H 0.065 0.935 18 C 0.030 3.970 19 N -0.897 5.897 20 Si 0.961 3.039 21 H -0.267 1.267 22 H -0.286 1.286 23 H -0.268 1.268 24 H 0.086 0.914 25 H 0.108 0.892 26 H 0.099 0.901 27 H 0.225 0.775 28 H 0.239 0.761 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.360 0.640 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.537 3.266 -0.533 19.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.175 5.175 3 N -0.069 5.069 4 C -0.086 4.086 5 C -0.308 4.308 6 C 0.086 3.914 7 N -0.281 5.281 8 C 0.064 3.936 9 N -0.296 5.296 10 C -0.031 4.031 11 S 0.242 5.758 12 C -0.254 4.254 13 C 0.184 3.816 14 H 0.052 0.948 15 O -0.376 6.376 16 C -0.622 4.622 17 H 0.083 0.917 18 C -0.174 4.174 19 N -0.533 5.533 20 Si 0.786 3.214 21 H -0.191 1.191 22 H -0.211 1.211 23 H -0.193 1.193 24 H 0.105 0.895 25 H 0.127 0.873 26 H 0.117 0.883 27 H 0.241 0.759 28 H 0.255 0.745 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.205 0.795 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.887 4.994 -0.074 20.505 hybrid contribution 0.557 -2.287 -0.257 2.368 sum -19.330 2.707 -0.331 19.521 Atomic orbital electron populations 1.22191 0.70704 1.05935 1.04761 1.48648 1.07674 0.99537 1.61666 1.76972 1.02112 1.07275 1.20546 1.24219 0.95832 0.92545 0.95973 1.19889 0.94578 0.96393 1.19909 1.19292 0.88783 0.89203 0.94109 1.67660 1.37666 0.99261 1.23487 1.25604 0.81482 1.00889 0.85638 1.68973 1.23147 1.14858 1.22594 1.23764 0.99530 0.90993 0.88779 1.86044 0.89761 1.13749 1.86284 1.24428 0.99898 0.94794 1.06235 1.19019 0.85251 0.91595 0.85758 0.94793 1.86534 1.84882 1.50200 1.15993 1.21873 0.92265 0.93194 1.54892 0.91691 1.25868 0.98234 1.00059 0.93203 1.70196 1.06044 1.29232 1.47854 0.85583 0.77012 0.79641 0.79175 1.19138 1.21144 1.19325 0.89527 0.87314 0.88265 0.75866 0.74478 0.89188 0.89151 0.79501 0.92798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.48 11.47 127.77 1.47 2.94 16 2 N -0.39 -9.27 4.05 -366.66 -1.48 -10.75 16 3 N -0.26 -6.38 12.45 -56.47 -0.70 -7.08 16 4 C 0.11 2.76 11.93 85.63 1.02 3.78 16 5 C -0.29 -8.43 6.08 -21.28 -0.13 -8.56 16 6 C 0.34 9.44 8.04 134.13 1.08 10.52 16 7 N -0.56 -14.91 10.47 -198.11 -2.07 -16.99 16 8 C 0.36 9.10 12.24 180.88 2.21 11.31 16 9 N -0.57 -17.66 9.32 -195.25 -1.82 -19.48 16 10 C 0.23 7.43 7.06 85.17 0.60 8.03 16 11 S 0.00 -0.03 21.66 -56.49 -1.22 -1.25 16 12 C -0.10 -4.09 4.52 71.98 0.33 -3.76 16 13 C 0.24 11.79 2.88 29.85 0.09 11.88 16 14 H 0.03 1.86 8.14 -2.38 -0.02 1.84 16 15 O -0.57 -28.04 12.31 -148.98 -1.83 -29.87 16 16 C -0.58 -30.55 8.76 25.60 0.22 -30.33 16 17 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 18 C 0.03 1.60 5.40 84.66 0.46 2.05 16 19 N -0.90 -51.84 12.83 21.45 0.28 -51.57 16 20 Si 0.96 41.86 29.54 68.60 2.03 43.89 16 21 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 22 H -0.29 -12.35 7.11 99.48 0.71 -11.65 16 23 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 24 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.23 4.21 8.06 -2.91 -0.02 4.19 16 28 H 0.24 3.94 8.06 -2.91 -0.02 3.91 16 29 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 30 H 0.09 3.54 8.14 -2.39 -0.02 3.52 16 31 H 0.36 15.55 9.04 -74.06 -0.67 14.88 16 32 H 0.26 14.45 8.31 -92.70 -0.77 13.68 16 Total: -1.00 -66.91 302.39 1.00 -65.91 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 0.49 Total: 19.33 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: 7.34 Total: 7.86 kcal Atomic # 7 Polarization: -100.06 SS G_CDS: -5.81 Total: -105.87 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -1.83 Total: -29.87 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Atomic # 16 Polarization: -0.03 SS G_CDS: -1.22 Total: -1.25 kcal Total: -66.91 1.00 -65.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330723607.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.169 kcal (2) G-P(sol) polarization free energy of solvation -66.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds