Wall clock time and date at job start Tue Mar 31 2020 01:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.30999 * 119.99887 * 2 1 4 4 C 1.50705 * 119.99917 * 179.97438 * 3 2 1 5 5 S 1.81402 * 109.47071 * 115.00102 * 4 3 2 6 6 O 1.42102 * 108.58211 * 65.50909 * 5 4 3 7 7 O 1.42102 * 108.57534 * 294.48650 * 5 4 3 8 8 C 1.81397 * 101.92098 * 179.97438 * 5 4 3 9 9 C 1.50700 * 109.47033 * 179.97438 * 8 5 4 10 10 C 1.38634 * 119.74962 * 269.72615 * 9 8 5 11 11 C 1.37624 * 120.24963 * 179.72034 * 10 9 8 12 12 C 1.40719 * 119.73925 * 0.57276 * 11 10 9 13 13 C 1.41391 * 120.24083 * 179.67729 * 12 11 10 14 14 H 1.08008 * 120.00103 * 204.40508 * 13 12 11 15 15 C 1.39949 * 120.00251 * 24.41318 * 13 12 11 16 16 N 1.30826 * 119.99771 * 17.83913 * 15 13 12 17 17 Si 1.86795 * 120.00256 * 197.84299 * 15 13 12 18 18 H 1.48503 * 109.47059 * 59.99979 * 17 15 13 19 19 H 1.48498 * 109.47169 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47384 * 299.99860 * 17 15 13 21 21 C 1.40717 * 119.51485 * 359.70459 * 12 11 10 22 22 C 1.37618 * 119.74381 * 359.97438 * 21 12 11 23 23 H 1.09004 * 109.46867 * 60.00865 * 1 2 3 24 24 H 1.09002 * 109.46824 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47413 * 300.00338 * 1 2 3 26 26 H 1.08000 * 120.00226 * 179.97438 * 2 1 3 27 27 H 1.07999 * 120.00086 * 359.97438 * 3 2 1 28 28 H 1.09001 * 109.47192 * 354.99929 * 4 3 2 29 29 H 1.09000 * 109.46751 * 234.99450 * 4 3 2 30 30 H 1.08994 * 109.46954 * 299.99825 * 8 5 4 31 31 H 1.09002 * 109.47217 * 60.00002 * 8 5 4 32 32 H 1.07999 * 119.87778 * 359.97438 * 10 9 8 33 33 H 1.07990 * 120.12939 * 180.27812 * 11 10 9 34 34 H 0.96994 * 120.00147 * 179.97438 * 16 15 13 35 35 H 1.08002 * 120.12941 * 179.97438 * 21 12 11 36 36 H 1.07997 * 119.87875 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 3.6690 1.1345 0.0006 5 16 4.2743 1.8570 -1.5494 6 8 3.8988 3.2270 -1.5874 7 8 3.8992 1.0048 -2.6229 8 6 6.0725 1.7570 -1.3323 9 6 6.7576 2.3237 -2.5491 10 6 7.0761 1.4900 -3.6100 11 6 7.6966 1.9976 -4.7286 12 6 8.0185 3.3662 -4.7878 13 6 8.6622 3.8976 -5.9290 14 1 9.2517 4.7988 -5.8460 15 6 8.5354 3.2560 -7.1663 16 7 7.5713 2.3932 -7.3599 17 14 9.7428 3.6315 -8.5412 18 1 11.1186 3.2894 -8.0990 19 1 9.3941 2.8269 -9.7396 20 1 9.6760 5.0763 -8.8779 21 6 7.6957 4.2018 -3.7026 22 6 7.0692 3.6737 -2.5969 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 2.0471 -0.9353 0.0004 27 1 1.6220 2.0698 -0.0004 28 1 4.0324 0.1108 0.0905 29 1 4.0320 1.7242 0.8424 30 1 6.3644 2.3286 -0.4514 31 1 6.3655 0.7151 -1.2030 32 1 6.8326 0.4389 -3.5602 33 1 7.9397 1.3473 -5.5557 34 1 7.4831 1.9488 -8.2175 35 1 7.9386 5.2536 -3.7373 36 1 6.8201 4.3131 -1.7630 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342465754.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:14 Heat of formation + Delta-G solvation = -71.152625 kcal Electronic energy + Delta-G solvation = -18962.131832 eV Core-core repulsion = 15923.317717 eV Total energy + Delta-G solvation = -3038.814115 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.56415 -37.84949 -36.94862 -36.62863 -35.93008 -33.19956 -31.36586 -31.25888 -29.53181 -26.33935 -25.47563 -23.00263 -22.08331 -20.61835 -19.71144 -19.29046 -17.62992 -17.42850 -17.05212 -16.91761 -15.95011 -15.64200 -15.58454 -15.39251 -15.10802 -14.36061 -14.15487 -13.89561 -13.67742 -13.50162 -13.32874 -13.01974 -12.95199 -12.89645 -12.78523 -12.75052 -12.68448 -12.24356 -12.21990 -12.03601 -11.80537 -11.47605 -11.34159 -11.00172 -9.95520 -9.45415 -9.24219 -8.70618 -6.40184 -0.98389 0.89098 1.07872 1.19849 1.37001 1.49188 1.52749 2.04759 2.17969 2.64434 2.89678 3.16803 3.60927 3.67373 3.90143 3.91146 4.12605 4.30557 4.45653 4.51143 4.51564 4.54882 4.75669 4.78841 4.87162 4.99721 5.08727 5.10528 5.27057 5.35867 5.62130 5.62567 5.69755 5.85403 6.02555 6.05854 6.29234 6.61186 6.85093 6.94027 8.26018 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.036911 B = 0.003721 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.408597 B = 7523.842519 C = 7876.251893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.124 4.124 3 C -0.202 4.202 4 C -0.553 4.553 5 S 2.377 3.623 6 O -0.989 6.989 7 O -0.990 6.990 8 C -0.512 4.512 9 C -0.229 4.229 10 C -0.092 4.092 11 C -0.196 4.196 12 C 0.083 3.917 13 C -0.491 4.491 14 H 0.083 0.917 15 C 0.031 3.969 16 N -0.820 5.820 17 Si 0.990 3.010 18 H -0.257 1.257 19 H -0.267 1.267 20 H -0.258 1.258 21 C -0.248 4.248 22 C -0.077 4.077 23 H 0.065 0.935 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.129 0.871 27 H 0.121 0.879 28 H 0.164 0.836 29 H 0.173 0.827 30 H 0.163 0.837 31 H 0.158 0.842 32 H 0.114 0.886 33 H 0.106 0.894 34 H 0.292 0.708 35 H 0.104 0.896 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.391 -6.097 14.379 16.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.145 4.145 3 C -0.221 4.221 4 C -0.682 4.682 5 S 2.570 3.430 6 O -0.986 6.986 7 O -0.987 6.987 8 C -0.641 4.641 9 C -0.233 4.233 10 C -0.111 4.111 11 C -0.216 4.216 12 C 0.080 3.920 13 C -0.520 4.520 14 H 0.101 0.899 15 C -0.185 4.185 16 N -0.445 5.445 17 Si 0.809 3.191 18 H -0.181 1.181 19 H -0.191 1.191 20 H -0.182 1.182 21 C -0.268 4.268 22 C -0.096 4.096 23 H 0.084 0.916 24 H 0.099 0.901 25 H 0.100 0.900 26 H 0.147 0.853 27 H 0.139 0.861 28 H 0.182 0.818 29 H 0.190 0.810 30 H 0.181 0.819 31 H 0.176 0.824 32 H 0.132 0.868 33 H 0.124 0.876 34 H 0.102 0.898 35 H 0.122 0.878 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.041 -5.909 13.499 16.331 hybrid contribution 0.802 0.014 -0.386 0.890 sum -6.239 -5.895 13.113 15.672 Atomic orbital electron populations 1.21026 0.91501 1.03985 1.02816 1.23414 0.97832 0.98146 0.95069 1.22300 0.92522 1.00280 1.07020 1.29230 1.03001 1.15992 1.20009 1.09485 0.79741 0.74929 0.78843 1.93463 1.82626 1.34990 1.87503 1.93478 1.82618 1.69059 1.53523 1.28807 1.19465 1.11651 1.04205 1.18609 1.13703 0.94350 0.96610 1.20949 0.97783 0.98762 0.93605 1.21336 1.06416 0.95692 0.98149 1.18092 0.89028 0.92074 0.92780 1.19950 1.28201 1.10592 0.93295 0.89937 1.26926 0.96020 0.92962 1.02546 1.69889 1.26553 1.21716 1.26338 0.85146 0.78489 0.79644 0.75789 1.18103 1.19118 1.18189 1.21229 1.09662 0.98586 0.97288 1.20887 0.96707 0.94502 0.97509 0.91634 0.90087 0.89982 0.85322 0.86089 0.81836 0.80977 0.81877 0.82364 0.86769 0.87646 0.89768 0.87793 0.85615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 10.17 71.24 0.72 -1.24 16 2 C -0.12 -2.21 9.87 25.65 0.25 -1.96 16 3 C -0.20 -4.17 9.16 25.65 0.23 -3.93 16 4 C -0.55 -9.72 6.25 71.24 0.45 -9.28 16 5 S 2.38 74.34 4.68 -56.49 -0.26 74.08 16 6 O -0.99 -39.17 18.10 -127.37 -2.30 -41.47 16 7 O -0.99 -40.45 18.10 -127.37 -2.31 -42.76 16 8 C -0.51 -14.35 5.92 71.24 0.42 -13.93 16 9 C -0.23 -9.78 5.16 -19.67 -0.10 -9.88 16 10 C -0.09 -4.39 9.67 22.22 0.21 -4.18 16 11 C -0.20 -10.76 8.70 22.73 0.20 -10.57 16 12 C 0.08 4.66 5.57 -21.29 -0.12 4.55 16 13 C -0.49 -27.02 9.05 23.46 0.21 -26.81 16 14 H 0.08 4.30 7.91 -2.91 -0.02 4.28 16 15 C 0.03 1.61 5.14 85.26 0.44 2.05 16 16 N -0.82 -44.26 10.95 21.83 0.24 -44.02 16 17 Si 0.99 38.40 29.59 68.60 2.03 40.43 16 18 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 19 H -0.27 -9.79 7.11 99.48 0.71 -9.09 16 20 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 21 C -0.25 -12.67 9.80 22.73 0.22 -12.45 16 22 C -0.08 -3.47 9.67 22.22 0.21 -3.26 16 23 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 24 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.13 1.86 7.84 -2.91 -0.02 1.83 16 27 H 0.12 2.53 8.05 -2.91 -0.02 2.51 16 28 H 0.16 1.82 7.79 -2.39 -0.02 1.80 16 29 H 0.17 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.16 3.20 8.08 -2.39 -0.02 3.18 16 31 H 0.16 3.27 8.08 -2.39 -0.02 3.25 16 32 H 0.11 4.85 8.06 -2.91 -0.02 4.83 16 33 H 0.11 5.98 6.15 -2.92 -0.02 5.96 16 34 H 0.29 14.18 8.30 -92.71 -0.77 13.41 16 35 H 0.10 4.97 8.06 -2.91 -0.02 4.95 16 36 H 0.13 4.78 8.06 -2.91 -0.02 4.75 16 Total: -1.00 -78.00 325.81 1.81 -76.19 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: 1.06 Total: 28.43 kcal Atomic # 6 Polarization: -94.24 SS G_CDS: 3.36 Total: -90.88 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: 0.24 Total: -44.02 kcal Atomic # 8 Polarization: -79.62 SS G_CDS: -4.61 Total: -84.23 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 2.03 Total: 40.43 kcal Atomic # 16 Polarization: 74.34 SS G_CDS: -0.26 Total: 74.08 kcal Total: -78.00 1.81 -76.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342465754.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.034 kcal (2) G-P(sol) polarization free energy of solvation -78.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds