Wall clock time and date at job start Tue Mar 31 2020 01:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45201 * 109.46906 * 2 1 4 4 C 1.34233 * 117.00141 * 180.02562 * 3 2 1 5 5 O 1.20830 * 120.00003 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00398 * 179.97438 * 4 3 2 7 7 S 1.81397 * 109.47285 * 180.02562 * 6 4 3 8 8 C 1.81402 * 102.99865 * 180.02562 * 7 6 4 9 9 C 1.50698 * 109.47089 * 179.97438 * 8 7 6 10 10 C 1.38632 * 119.75213 * 269.72353 * 9 8 7 11 11 C 1.37614 * 120.25123 * 179.71891 * 10 9 8 12 12 C 1.40719 * 119.74124 * 0.57305 * 11 10 9 13 13 C 1.41395 * 120.24246 * 179.67718 * 12 11 10 14 14 H 1.07998 * 119.99970 * 155.30784 * 13 12 11 15 15 C 1.39951 * 120.00207 * 335.31835 * 13 12 11 16 16 N 1.30818 * 119.99753 * 342.22830 * 15 13 12 17 17 Si 1.86797 * 120.00021 * 162.22875 * 15 13 12 18 18 H 1.48500 * 109.47048 * 94.66426 * 17 15 13 19 19 H 1.48498 * 109.47252 * 214.66382 * 17 15 13 20 20 H 1.48496 * 109.47461 * 334.66371 * 17 15 13 21 21 C 1.40704 * 119.51466 * 359.70404 * 12 11 10 22 22 C 1.37620 * 119.74516 * 359.97438 * 21 12 11 23 23 H 1.09002 * 109.46909 * 60.00206 * 1 2 3 24 24 H 1.08995 * 109.46746 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47219 * 300.00069 * 1 2 3 26 26 H 1.08998 * 109.47712 * 240.00025 * 2 1 3 27 27 H 1.08997 * 109.47462 * 119.99358 * 2 1 3 28 28 H 1.09002 * 109.46910 * 59.99920 * 6 4 3 29 29 H 1.09010 * 109.46844 * 300.00344 * 6 4 3 30 30 H 1.08998 * 109.47189 * 59.99915 * 8 7 6 31 31 H 1.09001 * 109.47280 * 299.99781 * 8 7 6 32 32 H 1.08005 * 119.87401 * 359.97438 * 10 9 8 33 33 H 1.07997 * 120.13194 * 180.28480 * 11 10 9 34 34 H 0.97004 * 119.99893 * 180.02562 * 16 15 13 35 35 H 1.08007 * 120.13445 * 179.97438 * 21 12 11 36 36 H 1.08000 * 119.87742 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5868 -0.0005 6 6 3.9207 2.9375 -0.0012 7 16 5.7322 2.8426 -0.0025 8 6 6.2321 4.5864 -0.0024 9 6 7.7363 4.6777 -0.0028 10 6 8.4231 4.7249 1.2005 11 6 9.7970 4.8025 1.2121 12 6 10.5040 4.8461 -0.0038 13 6 11.9153 4.9327 -0.0042 14 1 12.4779 4.5759 -0.8542 15 6 12.5831 5.4807 1.0969 16 7 11.9297 6.2179 1.9576 17 14 14.4074 5.1593 1.3375 18 1 15.1887 6.2760 0.7478 19 1 14.7052 5.0591 2.7888 20 1 14.7787 3.8873 0.6670 21 6 9.7962 4.8034 -1.2191 22 6 8.4226 4.7191 -1.2067 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5137 0.8900 28 1 3.5850 3.4699 0.8888 29 1 3.5843 3.4694 -0.8912 30 1 5.8390 5.0770 0.8881 31 1 5.8377 5.0776 -0.8919 32 1 7.8779 4.6966 2.1325 33 1 10.3302 4.8346 2.1507 34 1 12.3926 6.5980 2.7206 35 1 10.3287 4.8366 -2.1582 36 1 7.8773 4.6857 -2.1383 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342505519.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:48 Heat of formation + Delta-G solvation = -80.560126 kcal Electronic energy + Delta-G solvation = -18034.028524 eV Core-core repulsion = 14994.806469 eV Total energy + Delta-G solvation = -3039.222055 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.49680 -37.65840 -36.76694 -34.04140 -32.21924 -31.27645 -30.14716 -29.34800 -27.55379 -24.07921 -23.54555 -21.43469 -21.05534 -20.07643 -17.85866 -17.36608 -16.92710 -16.65714 -15.54932 -15.33449 -14.84925 -14.38785 -13.98865 -13.90897 -13.52827 -13.46279 -13.17318 -12.90340 -12.52937 -12.17869 -12.01314 -11.96852 -11.88538 -11.65643 -11.10235 -10.98189 -10.76719 -10.74638 -10.59926 -10.43368 -9.78308 -9.60982 -9.45632 -9.15461 -7.53434 -7.35111 -7.29119 -6.85015 -4.41509 1.45449 2.09449 2.56654 2.69566 2.94546 3.03176 3.05069 3.09790 3.36083 3.87673 4.51929 4.57968 4.62817 4.70628 4.90136 4.97668 5.13743 5.37865 5.45520 5.53429 5.59763 5.64004 5.74609 6.11898 6.23899 6.29239 6.34377 6.90132 6.99338 7.20372 7.28532 7.54581 7.61568 7.77225 7.98508 8.02893 8.21733 8.56235 8.80889 8.89301 10.08688 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.048805 B = 0.002705 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.570478 B =10349.732114 C =10444.993632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.359 6.359 4 C 0.478 3.522 5 O -0.483 6.483 6 C -0.114 4.114 7 S -0.207 6.207 8 C -0.015 4.015 9 C -0.212 4.212 10 C -0.077 4.077 11 C -0.168 4.168 12 C 0.117 3.883 13 C -0.454 4.454 14 H 0.080 0.920 15 C 0.075 3.925 16 N -0.786 5.786 17 Si 0.909 3.091 18 H -0.270 1.270 19 H -0.274 1.274 20 H -0.259 1.259 21 C -0.228 4.228 22 C -0.065 4.065 23 H 0.066 0.934 24 H 0.079 0.921 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.119 0.881 34 H 0.282 0.718 35 H 0.094 0.906 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.406 -5.042 -1.284 17.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.277 6.277 4 C 0.319 3.681 5 O -0.369 6.369 6 C -0.262 4.262 7 S 0.023 5.977 8 C -0.162 4.162 9 C -0.216 4.216 10 C -0.097 4.097 11 C -0.187 4.187 12 C 0.114 3.886 13 C -0.483 4.483 14 H 0.098 0.902 15 C -0.144 4.144 16 N -0.411 5.411 17 Si 0.733 3.267 18 H -0.195 1.195 19 H -0.199 1.199 20 H -0.183 1.183 21 C -0.248 4.248 22 C -0.085 4.085 23 H 0.085 0.915 24 H 0.098 0.902 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.134 0.866 29 H 0.134 0.866 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.137 0.863 34 H 0.093 0.907 35 H 0.112 0.888 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -15.652 -6.164 -1.066 16.855 hybrid contribution -0.013 0.942 0.191 0.961 sum -15.664 -5.222 -0.875 16.535 Atomic orbital electron populations 1.21806 0.92571 1.02989 1.03524 1.23046 0.95296 0.80084 1.02828 1.86481 1.24235 1.32554 1.84458 1.22771 0.80628 0.91648 0.73077 1.90727 1.60036 1.42442 1.43662 1.23137 1.00700 0.94639 1.07755 1.88117 0.96501 1.15073 1.97979 1.22141 0.98353 0.92301 1.03402 1.18324 0.90103 1.19030 0.94153 1.20524 0.94706 0.99371 0.95118 1.21290 0.92337 1.06352 0.98764 1.17683 0.93260 0.86689 0.90973 1.19679 0.91806 1.34754 1.02092 0.90181 1.25969 1.01161 0.92541 0.94722 1.69822 1.38677 1.21701 1.10885 0.86282 0.81831 0.80088 0.78493 1.19489 1.19928 1.18293 1.20958 0.93065 1.13656 0.97111 1.20379 0.94285 0.98665 0.95218 0.91461 0.90184 0.91461 0.91102 0.91097 0.86625 0.86648 0.90904 0.90983 0.89223 0.86317 0.90681 0.88750 0.89195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.29 37.16 0.38 -0.55 16 2 C 0.06 0.57 6.19 37.16 0.23 0.80 16 3 O -0.36 -4.17 10.22 -39.26 -0.40 -4.58 16 4 C 0.48 6.63 7.98 36.01 0.29 6.92 16 5 O -0.48 -8.35 15.61 -18.75 -0.29 -8.65 16 6 C -0.11 -1.43 6.54 36.01 0.24 -1.20 16 7 S -0.21 -3.60 20.86 -107.50 -2.24 -5.85 16 8 C -0.02 -0.26 6.06 36.00 0.22 -0.05 16 9 C -0.21 -4.55 5.16 -104.33 -0.54 -5.09 16 10 C -0.08 -1.78 9.67 -39.66 -0.38 -2.16 16 11 C -0.17 -4.32 8.70 -38.87 -0.34 -4.66 16 12 C 0.12 3.10 5.57 -106.83 -0.60 2.50 16 13 C -0.45 -11.85 9.05 -37.74 -0.34 -12.20 16 14 H 0.08 2.01 7.91 -52.49 -0.41 1.59 16 15 C 0.07 1.85 5.14 -17.34 -0.09 1.76 16 16 N -0.79 -19.87 10.97 55.55 0.61 -19.26 16 17 Si 0.91 18.31 29.59 -169.99 -5.03 13.27 16 18 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 19 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 20 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 21 C -0.23 -5.55 9.80 -38.88 -0.38 -5.93 16 22 C -0.07 -1.45 9.67 -39.66 -0.38 -1.83 16 23 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.65 8.13 -51.93 -0.42 0.23 16 27 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 28 H 0.12 1.20 8.14 -51.92 -0.42 0.78 16 29 H 0.12 1.19 8.14 -51.92 -0.42 0.77 16 30 H 0.07 1.13 8.08 -51.92 -0.42 0.72 16 31 H 0.07 1.10 8.08 -51.92 -0.42 0.68 16 32 H 0.09 1.89 8.06 -52.48 -0.42 1.46 16 33 H 0.12 3.14 6.18 -52.49 -0.32 2.82 16 34 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 35 H 0.09 2.16 8.06 -52.48 -0.42 1.74 16 36 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 LS Contribution 328.07 15.07 4.94 4.94 Total: -1.00 -29.13 328.07 -9.05 -38.18 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -4.94 Total: 3.62 kcal Atomic # 6 Polarization: -19.99 SS G_CDS: -1.70 Total: -21.69 kcal Atomic # 7 Polarization: -19.87 SS G_CDS: 0.61 Total: -19.26 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: -0.69 Total: -13.22 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.03 Total: 13.27 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -2.24 Total: -5.85 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.13 -9.05 -38.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342505519.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.376 kcal (2) G-P(sol) polarization free energy of solvation -29.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds