Wall clock time and date at job start Tue Mar 31 2020 01:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45201 * 109.46906 * 2 1 4 4 C 1.34233 * 117.00141 * 180.02562 * 3 2 1 5 5 O 1.20830 * 120.00003 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00398 * 179.97438 * 4 3 2 7 7 S 1.81397 * 109.47285 * 180.02562 * 6 4 3 8 8 C 1.81402 * 102.99865 * 180.02562 * 7 6 4 9 9 C 1.50698 * 109.47089 * 179.97438 * 8 7 6 10 10 C 1.38632 * 119.75213 * 269.72353 * 9 8 7 11 11 C 1.37614 * 120.25123 * 179.71891 * 10 9 8 12 12 C 1.40719 * 119.74124 * 0.57305 * 11 10 9 13 13 C 1.41395 * 120.24246 * 179.67718 * 12 11 10 14 14 H 1.07998 * 119.99970 * 155.30784 * 13 12 11 15 15 C 1.39951 * 120.00207 * 335.31835 * 13 12 11 16 16 N 1.30818 * 119.99753 * 342.22830 * 15 13 12 17 17 Si 1.86797 * 120.00021 * 162.22875 * 15 13 12 18 18 H 1.48500 * 109.47048 * 94.66426 * 17 15 13 19 19 H 1.48498 * 109.47252 * 214.66382 * 17 15 13 20 20 H 1.48496 * 109.47461 * 334.66371 * 17 15 13 21 21 C 1.40704 * 119.51466 * 359.70404 * 12 11 10 22 22 C 1.37620 * 119.74516 * 359.97438 * 21 12 11 23 23 H 1.09002 * 109.46909 * 60.00206 * 1 2 3 24 24 H 1.08995 * 109.46746 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47219 * 300.00069 * 1 2 3 26 26 H 1.08998 * 109.47712 * 240.00025 * 2 1 3 27 27 H 1.08997 * 109.47462 * 119.99358 * 2 1 3 28 28 H 1.09002 * 109.46910 * 59.99920 * 6 4 3 29 29 H 1.09010 * 109.46844 * 300.00344 * 6 4 3 30 30 H 1.08998 * 109.47189 * 59.99915 * 8 7 6 31 31 H 1.09001 * 109.47280 * 299.99781 * 8 7 6 32 32 H 1.08005 * 119.87401 * 359.97438 * 10 9 8 33 33 H 1.07997 * 120.13194 * 180.28480 * 11 10 9 34 34 H 0.97004 * 119.99893 * 180.02562 * 16 15 13 35 35 H 1.08007 * 120.13445 * 179.97438 * 21 12 11 36 36 H 1.08000 * 119.87742 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5868 -0.0005 6 6 3.9207 2.9375 -0.0012 7 16 5.7322 2.8426 -0.0025 8 6 6.2321 4.5864 -0.0024 9 6 7.7363 4.6777 -0.0028 10 6 8.4231 4.7249 1.2005 11 6 9.7970 4.8025 1.2121 12 6 10.5040 4.8461 -0.0038 13 6 11.9153 4.9327 -0.0042 14 1 12.4779 4.5759 -0.8542 15 6 12.5831 5.4807 1.0969 16 7 11.9297 6.2179 1.9576 17 14 14.4074 5.1593 1.3375 18 1 15.1887 6.2760 0.7478 19 1 14.7052 5.0591 2.7888 20 1 14.7787 3.8873 0.6670 21 6 9.7962 4.8034 -1.2191 22 6 8.4226 4.7191 -1.2067 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5137 0.8900 28 1 3.5850 3.4699 0.8888 29 1 3.5843 3.4694 -0.8912 30 1 5.8390 5.0770 0.8881 31 1 5.8377 5.0776 -0.8919 32 1 7.8779 4.6966 2.1325 33 1 10.3302 4.8346 2.1507 34 1 12.3926 6.5980 2.7206 35 1 10.3287 4.8366 -2.1582 36 1 7.8773 4.6857 -2.1383 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342505519.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:48 Heat of formation + Delta-G solvation = -94.519711 kcal Electronic energy + Delta-G solvation = -18034.633857 eV Core-core repulsion = 14994.806469 eV Total energy + Delta-G solvation = -3039.827388 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.52651 -39.47110 -37.78558 -35.84714 -33.03697 -32.92633 -31.20086 -31.09026 -29.26157 -25.77352 -24.30974 -22.91452 -22.45265 -21.80280 -19.24108 -18.88673 -17.87448 -17.85885 -17.16970 -16.65851 -16.03189 -15.81366 -15.63421 -15.47808 -14.76257 -14.45082 -14.24136 -14.20308 -13.82522 -13.58893 -13.50903 -13.36196 -12.91008 -12.75571 -12.69436 -12.54490 -12.44324 -12.10096 -11.72266 -11.57752 -11.52864 -11.29270 -11.07983 -10.82741 -9.37884 -9.18784 -8.67584 -8.64021 -6.34482 0.18269 1.02940 1.04213 1.15432 1.37879 1.45681 1.53205 1.68696 1.84387 2.19975 2.75440 3.63420 3.74907 3.96360 4.04039 4.06129 4.17249 4.18401 4.24236 4.33549 4.53010 4.60522 4.73446 4.81290 4.91722 5.04189 5.11340 5.13865 5.34480 5.37948 5.43388 5.68839 5.93178 6.08634 6.18141 6.36098 6.59468 6.67745 6.91391 7.00747 8.29875 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.048805 B = 0.002705 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.570478 B =10349.732114 C =10444.993632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.052 3.948 3 O -0.353 6.353 4 C 0.480 3.520 5 O -0.526 6.526 6 C -0.095 4.095 7 S -0.265 6.265 8 C -0.005 4.005 9 C -0.201 4.201 10 C -0.084 4.084 11 C -0.193 4.193 12 C 0.083 3.917 13 C -0.496 4.496 14 H 0.076 0.924 15 C 0.035 3.965 16 N -0.820 5.820 17 Si 0.982 3.018 18 H -0.260 1.260 19 H -0.265 1.265 20 H -0.261 1.261 21 C -0.246 4.246 22 C -0.070 4.070 23 H 0.071 0.929 24 H 0.100 0.900 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.146 0.854 29 H 0.148 0.852 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.108 0.892 33 H 0.101 0.899 34 H 0.290 0.710 35 H 0.098 0.902 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.879 -4.965 -1.521 19.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.021 4.021 3 O -0.270 6.270 4 C 0.323 3.677 5 O -0.415 6.415 6 C -0.242 4.242 7 S -0.036 6.036 8 C -0.152 4.152 9 C -0.204 4.204 10 C -0.104 4.104 11 C -0.213 4.213 12 C 0.080 3.920 13 C -0.526 4.526 14 H 0.094 0.906 15 C -0.181 4.181 16 N -0.445 5.445 17 Si 0.802 3.198 18 H -0.185 1.185 19 H -0.189 1.189 20 H -0.184 1.184 21 C -0.266 4.266 22 C -0.089 4.089 23 H 0.090 0.910 24 H 0.118 0.882 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.163 0.837 29 H 0.165 0.835 30 H 0.112 0.888 31 H 0.117 0.883 32 H 0.126 0.874 33 H 0.119 0.881 34 H 0.100 0.900 35 H 0.117 0.883 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -18.134 -6.061 -1.310 19.165 hybrid contribution 0.403 0.831 0.222 0.950 sum -17.731 -5.230 -1.087 18.518 Atomic orbital electron populations 1.21825 0.89930 1.04486 1.03911 1.23350 0.97304 0.78902 1.02588 1.86483 1.22798 1.33996 1.83765 1.23010 0.81096 0.91660 0.71940 1.90724 1.61065 1.43840 1.45822 1.23109 0.95904 0.94454 1.10769 1.88304 1.02058 1.14944 1.98277 1.22049 0.95052 0.92268 1.05798 1.18746 0.92841 1.15801 0.93054 1.20788 0.93932 0.98824 0.96851 1.21266 0.93650 1.08407 0.97994 1.18025 0.94011 0.87946 0.91974 1.19887 0.92313 1.37025 1.03338 0.90597 1.26785 1.05684 0.91675 0.93941 1.69866 1.40610 1.22487 1.11557 0.85196 0.76010 0.79852 0.78698 1.18493 1.18935 1.18445 1.21178 0.94404 1.14287 0.96734 1.20721 0.93607 0.97707 0.96915 0.91013 0.88154 0.91072 0.91389 0.91466 0.83652 0.83459 0.88826 0.88293 0.87419 0.88129 0.89978 0.88347 0.86263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 10.29 71.98 0.74 -0.65 16 2 C 0.05 0.87 6.19 71.98 0.45 1.31 16 3 O -0.35 -7.28 10.22 -51.44 -0.53 -7.80 16 4 C 0.48 12.17 7.98 71.24 0.57 12.74 16 5 O -0.53 -17.65 15.61 21.95 0.34 -17.31 16 6 C -0.09 -2.00 6.54 71.24 0.47 -1.54 16 7 S -0.26 -8.59 20.86 -56.49 -1.18 -9.76 16 8 C -0.01 -0.16 6.06 71.24 0.43 0.27 16 9 C -0.20 -8.34 5.16 -19.67 -0.10 -8.44 16 10 C -0.08 -3.89 9.67 22.22 0.21 -3.67 16 11 C -0.19 -10.34 8.70 22.73 0.20 -10.14 16 12 C 0.08 4.59 5.57 -21.29 -0.12 4.47 16 13 C -0.50 -27.18 9.05 23.46 0.21 -26.97 16 14 H 0.08 4.02 7.91 -2.91 -0.02 3.99 16 15 C 0.03 1.76 5.14 85.26 0.44 2.20 16 16 N -0.82 -42.96 10.97 21.83 0.24 -42.72 16 17 Si 0.98 38.47 29.59 68.60 2.03 40.50 16 18 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 19 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 20 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 21 C -0.25 -12.26 9.80 22.73 0.22 -12.04 16 22 C -0.07 -3.03 9.67 22.22 0.21 -2.81 16 23 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 24 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.07 1.17 8.13 -2.39 -0.02 1.15 16 27 H 0.07 1.17 8.13 -2.39 -0.02 1.15 16 28 H 0.15 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.15 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.09 2.53 8.08 -2.39 -0.02 2.51 16 31 H 0.10 2.56 8.08 -2.39 -0.02 2.54 16 32 H 0.11 4.46 8.06 -2.91 -0.02 4.44 16 33 H 0.10 5.62 6.18 -2.91 -0.02 5.60 16 34 H 0.29 13.63 8.30 -92.71 -0.77 12.86 16 35 H 0.10 4.64 8.06 -2.91 -0.02 4.62 16 36 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -66.24 328.07 5.91 -60.33 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: 1.07 Total: 22.01 kcal Atomic # 6 Polarization: -49.18 SS G_CDS: 3.93 Total: -45.25 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: 0.24 Total: -42.72 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -0.18 Total: -25.11 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 2.03 Total: 40.50 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.18 Total: -9.76 kcal Total: -66.24 5.91 -60.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342505519.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.190 kcal (2) G-P(sol) polarization free energy of solvation -66.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds