Wall clock time and date at job start Tue Mar 31 2020 01:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 117.00137 * 2 1 4 4 O 1.20820 * 120.00055 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99976 * 179.72551 * 3 2 1 6 6 H 1.09007 * 109.47040 * 325.27590 * 5 3 2 7 7 C 1.53001 * 109.47377 * 85.27456 * 5 3 2 8 8 S 1.81401 * 109.47332 * 205.27476 * 5 3 2 9 9 C 1.81399 * 103.00137 * 174.99785 * 8 5 3 10 10 C 1.50705 * 109.46895 * 179.97438 * 9 8 5 11 11 C 1.38632 * 119.74775 * 269.72675 * 10 9 8 12 12 C 1.37619 * 120.24422 * 179.72012 * 11 10 9 13 13 C 1.40714 * 119.74686 * 0.57776 * 12 11 10 14 14 C 1.41392 * 120.24574 * 179.67768 * 13 12 11 15 15 H 1.08009 * 119.99984 * 155.30941 * 14 13 12 16 16 C 1.39949 * 120.00259 * 335.31182 * 14 13 12 17 17 N 1.30823 * 119.99643 * 342.23062 * 16 14 13 18 18 Si 1.86794 * 120.00067 * 162.22908 * 16 14 13 19 19 H 1.48508 * 109.47038 * 94.66480 * 18 16 14 20 20 H 1.48497 * 109.47323 * 214.66134 * 18 16 14 21 21 H 1.48493 * 109.47425 * 334.66747 * 18 16 14 22 22 C 1.40725 * 119.50988 * 359.69747 * 13 12 11 23 23 C 1.37613 * 119.74186 * 0.02562 * 22 13 12 24 24 H 1.08998 * 109.46970 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46829 * 300.00375 * 1 2 3 26 26 H 1.09002 * 109.46716 * 59.99824 * 1 2 3 27 27 H 1.08998 * 109.47106 * 59.99952 * 7 5 3 28 28 H 1.09000 * 109.47263 * 180.02562 * 7 5 3 29 29 H 1.09001 * 109.46896 * 299.99959 * 7 5 3 30 30 H 1.08998 * 109.47251 * 299.99813 * 9 8 5 31 31 H 1.09003 * 109.46885 * 60.00355 * 9 8 5 32 32 H 1.07999 * 119.87933 * 359.97438 * 11 10 9 33 33 H 1.08005 * 120.12598 * 180.28039 * 12 11 10 34 34 H 0.96997 * 119.99878 * 179.97438 * 17 16 14 35 35 H 1.07996 * 120.12564 * 179.97438 * 22 13 12 36 36 H 1.08003 * 119.87285 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0063 6 1 3.9709 0.4515 0.5952 7 6 4.0881 1.1797 -1.4289 8 16 4.0862 2.8524 0.7353 9 6 5.8926 2.6982 0.7963 10 6 6.4841 3.9518 1.3876 11 6 6.8377 5.0038 0.5568 12 6 7.3733 6.1556 1.0864 13 6 7.5728 6.2582 2.4756 14 6 8.1287 7.4340 3.0302 15 1 7.9273 7.6932 4.0593 16 6 8.9397 8.2621 2.2460 17 7 9.4687 7.8030 1.1411 18 14 9.2667 10.0230 2.7768 19 1 10.5403 10.0820 3.5384 20 1 9.3673 10.8913 1.5763 21 1 8.1529 10.4955 3.6376 22 6 7.2155 5.1818 3.3086 23 6 6.6762 4.0419 2.7576 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 3.6836 2.0029 -2.0178 28 1 5.1766 1.2362 -1.4243 29 1 3.7757 0.2317 -1.8669 30 1 6.1635 1.8419 1.4139 31 1 6.2794 2.5553 -0.2127 32 1 6.6885 4.9207 -0.5096 33 1 7.6438 6.9757 0.4378 34 1 10.0305 8.3770 0.5973 35 1 7.3647 5.2497 4.3760 36 1 6.4016 3.2144 3.3950 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342527419.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:53:11 Heat of formation + Delta-G solvation = -78.051242 kcal Electronic energy + Delta-G solvation = -18452.178791 eV Core-core repulsion = 15413.065529 eV Total energy + Delta-G solvation = -3039.113262 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.54282 -37.66306 -36.63055 -34.06030 -33.48931 -31.25203 -29.35351 -28.08760 -27.52283 -24.81007 -24.00436 -21.23403 -21.03951 -20.08321 -17.83396 -17.36987 -17.10588 -16.48823 -15.63749 -15.36924 -14.46966 -14.34391 -14.04554 -13.97328 -13.74894 -13.61101 -12.73623 -12.61877 -12.47456 -12.26645 -12.03514 -12.00478 -11.83969 -11.64601 -11.10182 -11.00117 -10.93456 -10.72416 -10.51407 -10.39640 -9.76912 -9.54983 -9.45714 -9.15757 -7.53836 -7.36147 -7.30177 -6.85413 -4.41955 1.42452 2.12126 2.58815 2.68743 2.94205 3.02886 3.04754 3.09542 3.36020 3.87395 4.56655 4.58635 4.68752 4.89050 4.90492 4.97332 5.27966 5.38261 5.47251 5.56878 5.60304 5.74160 5.88912 6.12842 6.17867 6.28680 6.34122 6.89752 6.98935 7.19938 7.28073 7.54113 7.60201 7.76764 7.98057 8.02484 8.21308 8.55849 8.80486 8.88890 10.08312 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.041892 B = 0.003093 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.221330 B = 9050.673280 C = 9122.916851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.359 6.359 3 C 0.481 3.519 4 O -0.483 6.483 5 C -0.080 4.080 6 H 0.113 0.887 7 C -0.141 4.141 8 S -0.209 6.209 9 C -0.012 4.012 10 C -0.212 4.212 11 C -0.076 4.076 12 C -0.168 4.168 13 C 0.118 3.882 14 C -0.454 4.454 15 H 0.080 0.920 16 C 0.075 3.925 17 N -0.786 5.786 18 Si 0.909 3.091 19 H -0.270 1.270 20 H -0.274 1.274 21 H -0.259 1.259 22 C -0.228 4.228 23 C -0.065 4.065 24 H 0.101 0.899 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.119 0.881 34 H 0.282 0.718 35 H 0.094 0.906 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.878 -12.295 -4.203 15.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.276 6.276 3 C 0.321 3.679 4 O -0.368 6.368 5 C -0.209 4.209 6 H 0.131 0.869 7 C -0.199 4.199 8 S 0.023 5.977 9 C -0.159 4.159 10 C -0.217 4.217 11 C -0.096 4.096 12 C -0.187 4.187 13 C 0.114 3.886 14 C -0.483 4.483 15 H 0.098 0.902 16 C -0.144 4.144 17 N -0.411 5.411 18 Si 0.733 3.267 19 H -0.195 1.195 20 H -0.199 1.199 21 H -0.183 1.183 22 C -0.248 4.248 23 C -0.086 4.086 24 H 0.119 0.881 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.093 0.907 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.108 0.892 33 H 0.137 0.863 34 H 0.093 0.907 35 H 0.112 0.888 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.666 -11.156 -4.107 15.322 hybrid contribution 0.785 -0.262 -0.187 0.848 sum -8.881 -11.418 -4.294 15.089 Atomic orbital electron populations 1.23283 0.76192 1.03623 1.02745 1.86493 1.23467 1.33201 1.84406 1.22869 0.90662 0.81586 0.72746 1.90711 1.66459 1.36050 1.43604 1.22964 0.90984 1.04090 1.02890 0.86887 1.21991 1.02497 1.03202 0.92251 1.88009 1.09818 1.18918 1.80992 1.22156 0.90696 1.00221 1.02802 1.18332 1.13625 0.96004 0.93720 1.20520 0.98384 0.93733 0.97003 1.21290 1.03938 0.97606 0.95900 1.17683 0.87754 0.91263 0.91869 1.19681 1.25162 1.04735 0.98771 0.90193 1.25965 0.93858 1.00413 0.94127 1.69822 1.22222 1.36873 1.12161 0.86286 0.79620 0.81477 0.79334 1.19481 1.19921 1.18295 1.20955 1.10987 0.94619 0.98221 1.20373 0.98022 0.96831 0.93342 0.88051 0.91731 0.91858 0.90696 0.90401 0.91378 0.91056 0.90781 0.89212 0.86324 0.90676 0.88769 0.89234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.56 101.05 1.07 1.37 16 2 O -0.36 -4.20 10.57 -39.25 -0.41 -4.61 16 3 C 0.48 6.81 7.08 36.01 0.25 7.07 16 4 O -0.48 -8.36 15.89 -18.75 -0.30 -8.66 16 5 C -0.08 -1.06 3.29 -27.88 -0.09 -1.15 16 6 H 0.11 1.27 8.14 -51.92 -0.42 0.85 16 7 C -0.14 -1.53 9.08 37.16 0.34 -1.19 16 8 S -0.21 -3.65 20.44 -107.50 -2.20 -5.84 16 9 C -0.01 -0.21 5.76 36.01 0.21 0.00 16 10 C -0.21 -4.54 5.16 -104.33 -0.54 -5.08 16 11 C -0.08 -1.75 9.67 -39.66 -0.38 -2.14 16 12 C -0.17 -4.30 8.70 -38.87 -0.34 -4.64 16 13 C 0.12 3.10 5.57 -106.82 -0.60 2.50 16 14 C -0.45 -11.83 9.05 -37.74 -0.34 -12.18 16 15 H 0.08 2.00 7.91 -52.48 -0.41 1.59 16 16 C 0.08 1.85 5.14 -17.34 -0.09 1.76 16 17 N -0.79 -19.83 10.97 55.55 0.61 -19.22 16 18 Si 0.91 18.27 29.59 -169.99 -5.03 13.24 16 19 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 20 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 21 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 22 C -0.23 -5.53 9.80 -38.87 -0.38 -5.91 16 23 C -0.07 -1.45 9.67 -39.66 -0.38 -1.83 16 24 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 26 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.08 0.79 6.92 -51.93 -0.36 0.43 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 1.10 8.08 -51.92 -0.42 0.68 16 31 H 0.07 1.15 7.08 -51.92 -0.37 0.78 16 32 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 33 H 0.12 3.13 6.18 -52.48 -0.32 2.81 16 34 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 35 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 36 H 0.09 1.76 8.06 -52.48 -0.42 1.33 16 LS Contribution 324.76 15.07 4.89 4.89 Total: -1.00 -29.04 324.76 -8.54 -37.58 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -4.82 Total: 4.04 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: -1.28 Total: -21.42 kcal Atomic # 7 Polarization: -19.83 SS G_CDS: 0.61 Total: -19.22 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: -0.71 Total: -13.28 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.03 Total: 13.24 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -2.20 Total: -5.84 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.04 -8.54 -37.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342527419.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.469 kcal (2) G-P(sol) polarization free energy of solvation -29.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds