Wall clock time and date at job start Tue Mar 31 2020 01:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.47036 * 2 1 4 4 C 1.35632 * 116.99817 * 179.97438 * 3 2 1 5 5 C 1.38708 * 120.15926 * 359.97438 * 4 3 2 6 6 C 1.38056 * 120.09244 * 180.02562 * 5 4 3 7 7 C 1.38591 * 120.40866 * 359.67709 * 6 5 4 8 8 C 1.37739 * 120.31264 * 0.60190 * 7 6 5 9 9 N 1.48020 * 120.04797 * 179.69430 * 8 7 6 10 10 O 1.31704 * 120.00150 * 359.73187 * 9 8 7 11 11 O 1.31700 * 120.00243 * 179.45045 * 9 8 7 12 12 C 1.39807 * 119.90495 * 359.42399 * 8 7 6 13 13 C 1.47357 * 120.20512 * 180.25235 * 12 8 7 14 14 O 1.21516 * 120.00104 * 90.00398 * 13 12 8 15 15 N 1.34777 * 120.00322 * 269.99747 * 13 12 8 16 16 C 1.33303 * 120.00180 * 179.97438 * 15 13 12 17 17 H 1.08005 * 120.00541 * 0.02562 * 16 15 13 18 18 C 1.46796 * 120.00328 * 180.02562 * 16 15 13 19 19 N 1.29319 * 119.99351 * 0.02562 * 18 16 15 20 20 Si 1.86791 * 120.00392 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47462 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47407 * 120.00013 * 20 18 16 23 23 H 1.48501 * 109.47256 * 240.00242 * 20 18 16 24 24 H 1.09000 * 109.47139 * 59.99647 * 1 2 3 25 25 H 1.08999 * 109.46751 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46825 * 299.99716 * 1 2 3 27 27 H 1.09000 * 109.47328 * 240.00334 * 2 1 3 28 28 H 1.08998 * 109.47674 * 119.99819 * 2 1 3 29 29 H 1.07999 * 119.95459 * 0.02562 * 5 4 3 30 30 H 1.07996 * 119.79285 * 179.97438 * 6 5 4 31 31 H 1.07998 * 119.84440 * 180.32266 * 7 6 5 32 32 H 0.97001 * 119.99737 * 0.02562 * 15 13 12 33 33 H 0.96994 * 119.99636 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3510 1.5250 0.0005 5 6 4.1990 0.4273 0.0016 6 6 5.5674 0.6098 0.0027 7 6 6.1048 1.8872 -0.0040 8 6 5.2783 2.9891 0.0007 9 7 5.8586 4.3509 0.0003 10 8 7.1661 4.5095 0.0008 11 8 5.0676 5.4038 -0.0062 12 6 3.8906 2.8196 0.0000 13 6 3.0003 3.9938 -0.0006 14 8 2.6336 4.4777 -1.0532 15 7 2.5925 4.5310 1.1663 16 6 1.7875 5.5935 1.1657 17 1 1.4616 6.0237 0.2302 18 6 1.3438 6.1790 2.4366 19 7 1.7343 5.6642 3.5568 20 14 0.2152 7.6674 2.4358 21 1 -0.0832 8.0617 1.0355 22 1 -1.0502 7.3296 3.1358 23 1 0.8822 8.7948 3.1354 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.7881 -0.5715 0.0016 30 1 6.2232 -0.2483 0.0039 31 1 7.1766 2.0194 -0.0084 32 1 2.8854 4.1449 2.0066 33 1 1.4414 6.0512 4.3966 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343279864.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:32 Heat of formation + Delta-G solvation = -11.109910 kcal Electronic energy + Delta-G solvation = -22035.452295 eV Core-core repulsion = 18452.948613 eV Total energy + Delta-G solvation = -3582.503682 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 3.91 seconds Orbital eigenvalues (eV) -40.55419 -38.63482 -37.84081 -36.86298 -34.23887 -33.47093 -32.14958 -31.87427 -31.36422 -29.78078 -26.41597 -25.13853 -23.66266 -23.03521 -21.37373 -19.98837 -18.61553 -18.39287 -17.32601 -16.73586 -16.56626 -16.18743 -15.73983 -15.31263 -15.04111 -14.75858 -14.18938 -13.90427 -13.34103 -13.12557 -12.92520 -12.68301 -12.36359 -12.10708 -12.01344 -11.90214 -11.29106 -11.21872 -10.87275 -10.58275 -10.44910 -10.41096 -10.20522 -9.83409 -9.74070 -9.32256 -8.68252 -8.47481 -8.28332 -6.93770 -3.64624 -0.30437 1.12388 1.52713 1.83396 2.96786 3.11103 3.11658 3.18094 3.43789 3.67546 3.91739 4.42751 4.61961 4.74429 4.82363 4.88058 4.99211 5.02106 5.12343 5.17811 5.28141 5.52956 5.74164 5.78324 5.96941 6.04905 6.08210 6.13929 6.21895 6.69163 6.91218 7.29328 7.64196 7.70098 8.21098 8.84644 9.22877 9.88051 10.19728 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.013392 B = 0.007504 C = 0.005299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.340472 B = 3730.312957 C = 5283.145575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.052 3.948 3 O -0.291 6.291 4 C 0.163 3.837 5 C -0.183 4.183 6 C -0.078 4.078 7 C -0.106 4.106 8 C 0.059 3.941 9 N -0.022 5.022 10 O -0.257 6.257 11 O -0.149 6.149 12 C -0.078 4.078 13 C 0.474 3.526 14 O -0.567 6.567 15 N -0.504 5.504 16 C -0.272 4.272 17 H 0.122 0.878 18 C 0.025 3.975 19 N -0.828 5.828 20 Si 0.941 3.059 21 H -0.257 1.257 22 H -0.276 1.276 23 H -0.274 1.274 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.142 0.858 30 H 0.144 0.856 31 H 0.151 0.849 32 H 0.390 0.610 33 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.059 -14.348 -0.892 14.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.023 4.023 3 O -0.203 6.203 4 C 0.115 3.885 5 C -0.203 4.203 6 C -0.098 4.098 7 C -0.126 4.126 8 C -0.031 4.031 9 N 0.427 4.573 10 O -0.419 6.419 11 O -0.335 6.335 12 C -0.085 4.085 13 C 0.261 3.739 14 O -0.452 6.452 15 N -0.134 5.134 16 C -0.406 4.406 17 H 0.139 0.861 18 C -0.188 4.188 19 N -0.464 5.464 20 Si 0.765 3.235 21 H -0.181 1.181 22 H -0.202 1.202 23 H -0.200 1.200 24 H 0.088 0.912 25 H 0.096 0.904 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.160 0.840 30 H 0.162 0.838 31 H 0.168 0.832 32 H 0.223 0.777 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.366 -14.352 -1.428 14.428 hybrid contribution 0.117 0.528 0.630 0.831 sum -0.249 -13.824 -0.797 13.849 Atomic orbital electron populations 1.21770 0.92348 1.02590 1.04296 1.22896 0.96516 0.81600 1.01252 1.86214 1.17421 1.29333 1.87365 1.18633 0.83559 0.91470 0.94863 1.21449 0.94255 0.98309 1.06252 1.20839 0.94408 0.96080 0.98425 1.20789 1.01045 0.90326 1.00473 1.19942 0.91444 0.81118 1.10555 1.49996 1.02540 1.03544 1.01188 1.96148 0.90503 1.94578 1.60654 1.96363 1.56068 1.27504 1.53530 1.19260 0.91667 0.94648 1.02905 1.16709 0.86108 0.85749 0.85301 1.90612 1.58962 1.64759 1.30878 1.40848 1.39215 1.26571 1.06796 1.21124 1.19844 1.05701 0.93955 0.86088 1.27055 0.98384 0.99603 0.93769 1.68654 1.39318 1.39420 0.99022 0.85596 0.78654 0.79442 0.79773 1.18066 1.20177 1.19972 0.91197 0.90414 0.91067 0.91888 0.91781 0.83987 0.83794 0.83175 0.77665 0.89975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 108. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 10.28 37.16 0.38 -1.16 16 2 C 0.05 0.59 5.46 37.16 0.20 0.79 16 3 O -0.29 -5.00 9.59 -18.59 -0.18 -5.18 16 4 C 0.16 2.83 6.70 -38.65 -0.26 2.57 16 5 C -0.18 -2.30 9.03 -39.47 -0.36 -2.66 16 6 C -0.08 -0.92 10.03 -39.52 -0.40 -1.32 16 7 C -0.11 -1.64 9.56 -39.63 -0.38 -2.02 16 8 C 0.06 1.22 6.91 -79.54 -0.55 0.67 16 9 N -0.02 -0.52 4.98 34.16 0.17 -0.35 16 10 O -0.26 -5.99 19.15 -31.57 -0.60 -6.59 16 11 O -0.15 -4.07 16.80 -36.28 -0.61 -4.68 16 12 C -0.08 -1.68 5.64 -104.84 -0.59 -2.27 16 13 C 0.47 12.32 4.06 -12.55 -0.05 12.27 16 14 O -0.57 -16.74 16.44 -5.73 -0.09 -16.83 16 15 N -0.50 -13.18 4.99 -10.71 -0.05 -13.23 16 16 C -0.27 -7.36 9.92 -13.46 -0.13 -7.50 16 17 H 0.12 3.44 7.19 -52.48 -0.38 3.06 16 18 C 0.03 0.63 5.69 -15.15 -0.09 0.54 16 19 N -0.83 -20.63 13.09 56.00 0.73 -19.90 16 20 Si 0.94 19.33 29.65 -169.99 -5.04 14.29 16 21 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 22 H -0.28 -5.47 7.11 56.52 0.40 -5.06 16 23 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 24 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.58 7.66 -51.93 -0.40 0.18 16 28 H 0.06 0.58 7.66 -51.93 -0.40 0.18 16 29 H 0.14 1.23 6.30 -52.49 -0.33 0.90 16 30 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 31 H 0.15 2.06 7.56 -52.49 -0.40 1.66 16 32 H 0.39 9.89 7.97 -40.82 -0.33 9.57 16 33 H 0.29 6.55 8.26 -40.82 -0.34 6.21 16 LS Contribution 304.38 15.07 4.59 4.59 Total: -1.00 -33.54 304.38 -6.36 -39.90 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -3.05 Total: 8.08 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -2.22 Total: -0.09 kcal Atomic # 7 Polarization: -34.33 SS G_CDS: 0.85 Total: -33.48 kcal Atomic # 8 Polarization: -31.80 SS G_CDS: -1.49 Total: -33.28 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.04 Total: 14.29 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -33.54 -6.36 -39.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343279864.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.786 kcal (2) G-P(sol) polarization free energy of solvation -33.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.91 seconds