Wall clock time and date at job start Tue Mar 31 2020 01:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.47036 * 2 1 4 4 C 1.35632 * 116.99817 * 179.97438 * 3 2 1 5 5 C 1.38708 * 120.15926 * 359.97438 * 4 3 2 6 6 C 1.38056 * 120.09244 * 180.02562 * 5 4 3 7 7 C 1.38591 * 120.40866 * 359.67709 * 6 5 4 8 8 C 1.37739 * 120.31264 * 0.60190 * 7 6 5 9 9 N 1.48020 * 120.04797 * 179.69430 * 8 7 6 10 10 O 1.31704 * 120.00150 * 359.73187 * 9 8 7 11 11 O 1.31700 * 120.00243 * 179.45045 * 9 8 7 12 12 C 1.39807 * 119.90495 * 359.42399 * 8 7 6 13 13 C 1.47357 * 120.20512 * 180.25235 * 12 8 7 14 14 O 1.21516 * 120.00104 * 90.00398 * 13 12 8 15 15 N 1.34777 * 120.00322 * 269.99747 * 13 12 8 16 16 C 1.33303 * 120.00180 * 179.97438 * 15 13 12 17 17 H 1.08005 * 120.00541 * 0.02562 * 16 15 13 18 18 C 1.46796 * 120.00328 * 180.02562 * 16 15 13 19 19 N 1.29319 * 119.99351 * 0.02562 * 18 16 15 20 20 Si 1.86791 * 120.00392 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47462 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47407 * 120.00013 * 20 18 16 23 23 H 1.48501 * 109.47256 * 240.00242 * 20 18 16 24 24 H 1.09000 * 109.47139 * 59.99647 * 1 2 3 25 25 H 1.08999 * 109.46751 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46825 * 299.99716 * 1 2 3 27 27 H 1.09000 * 109.47328 * 240.00334 * 2 1 3 28 28 H 1.08998 * 109.47674 * 119.99819 * 2 1 3 29 29 H 1.07999 * 119.95459 * 0.02562 * 5 4 3 30 30 H 1.07996 * 119.79285 * 179.97438 * 6 5 4 31 31 H 1.07998 * 119.84440 * 180.32266 * 7 6 5 32 32 H 0.97001 * 119.99737 * 0.02562 * 15 13 12 33 33 H 0.96994 * 119.99636 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3510 1.5250 0.0005 5 6 4.1990 0.4273 0.0016 6 6 5.5674 0.6098 0.0027 7 6 6.1048 1.8872 -0.0040 8 6 5.2783 2.9891 0.0007 9 7 5.8586 4.3509 0.0003 10 8 7.1661 4.5095 0.0008 11 8 5.0676 5.4038 -0.0062 12 6 3.8906 2.8196 0.0000 13 6 3.0003 3.9938 -0.0006 14 8 2.6336 4.4777 -1.0532 15 7 2.5925 4.5310 1.1663 16 6 1.7875 5.5935 1.1657 17 1 1.4616 6.0237 0.2302 18 6 1.3438 6.1790 2.4366 19 7 1.7343 5.6642 3.5568 20 14 0.2152 7.6674 2.4358 21 1 -0.0832 8.0617 1.0355 22 1 -1.0502 7.3296 3.1358 23 1 0.8822 8.7948 3.1354 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.7881 -0.5715 0.0016 30 1 6.2232 -0.2483 0.0039 31 1 7.1766 2.0194 -0.0084 32 1 2.8854 4.1449 2.0066 33 1 1.4414 6.0512 4.3966 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343279864.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:31 Heat of formation + Delta-G solvation = -37.802528 kcal Electronic energy + Delta-G solvation = -22036.609774 eV Core-core repulsion = 18452.948613 eV Total energy + Delta-G solvation = -3583.661161 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.99559 -40.26301 -39.73203 -38.40928 -36.05334 -35.55597 -33.76935 -33.09582 -32.85817 -31.10165 -28.15171 -26.86398 -24.80424 -24.51384 -22.76005 -21.67693 -20.39078 -20.01954 -19.14972 -18.30130 -18.06188 -17.37889 -17.22346 -17.00595 -16.89260 -16.22049 -15.89203 -15.26657 -14.77531 -14.55929 -14.47064 -13.81201 -13.58267 -13.47894 -13.28326 -13.14208 -12.95424 -12.63353 -12.42242 -12.27118 -12.12778 -12.09507 -11.88127 -11.80339 -11.57742 -10.75099 -10.50188 -10.30736 -9.63995 -8.66977 -5.77933 -1.92888 -0.18992 -0.00739 0.01328 1.27161 1.36067 1.50955 1.87963 1.97553 2.13365 2.26432 2.89093 3.02748 3.46262 3.58185 3.68039 3.77656 3.88264 4.03858 4.07493 4.17595 4.32619 4.51174 4.66968 4.76296 4.84857 4.86562 4.89612 5.17100 5.20112 5.27958 5.55540 5.80345 6.19548 6.43887 7.05475 7.44968 8.09216 8.49920 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.013392 B = 0.007504 C = 0.005299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.340472 B = 3730.312957 C = 5283.145575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.038 3.962 3 O -0.333 6.333 4 C 0.149 3.851 5 C -0.129 4.129 6 C -0.044 4.044 7 C -0.079 4.079 8 C 0.022 3.978 9 N -0.023 5.023 10 O -0.119 6.119 11 O -0.248 6.248 12 C -0.114 4.114 13 C 0.468 3.532 14 O -0.638 6.638 15 N -0.513 5.513 16 C -0.378 4.378 17 H 0.076 0.924 18 C 0.002 3.998 19 N -0.880 5.880 20 Si 1.000 3.000 21 H -0.274 1.274 22 H -0.257 1.257 23 H -0.265 1.265 24 H 0.050 0.950 25 H 0.118 0.882 26 H 0.048 0.952 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.203 0.797 30 H 0.221 0.779 31 H 0.188 0.812 32 H 0.384 0.616 33 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.082 -20.845 -1.361 21.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.035 4.035 3 O -0.247 6.247 4 C 0.101 3.899 5 C -0.147 4.147 6 C -0.062 4.062 7 C -0.098 4.098 8 C -0.065 4.065 9 N 0.453 4.547 10 O -0.333 6.333 11 O -0.418 6.418 12 C -0.120 4.120 13 C 0.257 3.743 14 O -0.529 6.529 15 N -0.142 5.142 16 C -0.508 4.508 17 H 0.094 0.906 18 C -0.206 4.206 19 N -0.515 5.515 20 Si 0.821 3.179 21 H -0.198 1.198 22 H -0.182 1.182 23 H -0.190 1.190 24 H 0.069 0.931 25 H 0.137 0.863 26 H 0.068 0.932 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.220 0.780 30 H 0.237 0.763 31 H 0.205 0.795 32 H 0.216 0.784 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.146 -20.814 -1.788 21.298 hybrid contribution -0.301 1.665 0.375 1.733 sum 3.845 -19.149 -1.413 19.583 Atomic orbital electron populations 1.21854 0.92508 1.04527 1.02339 1.23423 0.96713 0.79211 1.04167 1.86233 1.17742 1.33469 1.87237 1.18933 0.84773 0.91052 0.95181 1.22312 0.94248 0.98986 0.99184 1.21802 0.94648 0.96363 0.93383 1.21576 1.02186 0.89614 0.96467 1.20528 0.91922 0.79830 1.14183 1.50857 1.02473 1.05827 0.95569 1.96088 0.91178 1.95025 1.51028 1.96534 1.55725 1.28745 1.60799 1.19305 0.91892 0.95080 1.05726 1.17363 0.86385 0.86211 0.84354 1.90513 1.63510 1.66202 1.32667 1.40470 1.41171 1.26306 1.06221 1.20403 1.28087 1.09205 0.93131 0.90649 1.27654 0.98652 1.01378 0.92886 1.68679 1.42206 1.41542 0.99076 0.84813 0.77702 0.76667 0.78708 1.19832 1.18170 1.18978 0.93128 0.86328 0.93248 0.88605 0.88566 0.77976 0.76277 0.79525 0.78380 0.89731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 10.28 71.98 0.74 -2.23 16 2 C 0.04 0.71 5.46 71.98 0.39 1.10 16 3 O -0.33 -11.34 9.59 -89.45 -0.86 -12.20 16 4 C 0.15 4.79 6.70 22.87 0.15 4.94 16 5 C -0.13 -2.13 9.03 22.34 0.20 -1.93 16 6 C -0.04 -0.55 10.03 22.31 0.22 -0.33 16 7 C -0.08 -1.77 9.56 22.24 0.21 -1.56 16 8 C 0.02 0.86 6.91 36.64 0.25 1.11 16 9 N -0.02 -1.09 4.98 -45.84 -0.23 -1.32 16 10 O -0.12 -4.81 19.15 3.51 0.07 -4.74 16 11 O -0.25 -14.53 16.80 8.02 0.13 -14.40 16 12 C -0.11 -5.01 5.64 -20.01 -0.11 -5.12 16 13 C 0.47 27.20 4.06 86.64 0.35 27.55 16 14 O -0.64 -42.93 16.44 6.82 0.11 -42.81 16 15 N -0.51 -30.87 4.99 -306.09 -1.53 -32.40 16 16 C -0.38 -24.13 9.92 86.71 0.86 -23.27 16 17 H 0.08 5.23 7.19 -2.91 -0.02 5.21 16 18 C 0.00 0.13 5.69 87.30 0.50 0.63 16 19 N -0.88 -49.39 13.09 23.26 0.30 -49.09 16 20 Si 1.00 45.20 29.65 68.60 2.03 47.23 16 21 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 22 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 23 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 24 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.10 1.16 7.66 -2.39 -0.02 1.14 16 28 H 0.10 1.17 7.66 -2.39 -0.02 1.15 16 29 H 0.20 1.16 6.30 -2.91 -0.02 1.14 16 30 H 0.22 0.00 8.06 -2.91 -0.02 -0.03 16 31 H 0.19 3.04 7.56 -2.91 -0.02 3.02 16 32 H 0.38 22.33 7.97 -92.71 -0.74 21.59 16 33 H 0.29 14.75 8.26 -92.71 -0.77 13.98 16 Total: -1.00 -95.06 304.38 4.25 -90.81 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: 0.44 Total: 18.02 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: 3.77 Total: 0.90 kcal Atomic # 7 Polarization: -81.36 SS G_CDS: -1.45 Total: -82.81 kcal Atomic # 8 Polarization: -73.62 SS G_CDS: -0.54 Total: -74.16 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -95.06 4.25 -90.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343279864.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.011 kcal (2) G-P(sol) polarization free energy of solvation -95.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds