Wall clock time and date at job start Tue Mar 31 2020 01:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47255 * 2 1 4 4 C 1.35689 * 117.00153 * 179.97438 * 3 2 1 5 5 C 1.39070 * 119.90081 * 0.27727 * 4 3 2 6 6 C 1.37634 * 120.09120 * 180.27582 * 5 4 3 7 7 C 1.39861 * 119.90514 * 359.46885 * 6 5 4 8 8 C 1.47426 * 120.09899 * 180.23028 * 7 6 5 9 9 O 1.21512 * 120.00401 * 180.02562 * 8 7 6 10 10 N 1.34779 * 119.99943 * 0.02562 * 8 7 6 11 11 C 1.33302 * 120.00584 * 179.97438 * 10 8 7 12 12 H 1.08003 * 119.99650 * 359.97438 * 11 10 8 13 13 C 1.46781 * 120.00459 * 180.02562 * 11 10 8 14 14 N 1.29317 * 120.00264 * 0.02562 * 13 11 10 15 15 Si 1.86808 * 120.00265 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46922 * 59.99800 * 15 13 11 17 17 H 1.48495 * 109.47087 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46803 * 300.00193 * 15 13 11 19 19 C 1.39824 * 119.80761 * 0.26027 * 7 6 5 20 20 C 1.37675 * 119.90248 * 359.97438 * 19 7 6 21 21 N 1.48018 * 119.95073 * 180.02562 * 20 19 7 22 22 O 1.31701 * 119.99862 * 359.97438 * 21 20 19 23 23 O 1.31699 * 120.00346 * 180.02562 * 21 20 19 24 24 H 1.09004 * 109.47312 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47229 * 299.99885 * 1 2 3 26 26 H 1.08999 * 109.47216 * 59.99607 * 1 2 3 27 27 H 1.09007 * 109.47082 * 240.00395 * 2 1 3 28 28 H 1.08999 * 109.47216 * 120.00392 * 2 1 3 29 29 H 1.07998 * 119.95306 * 0.02562 * 5 4 3 30 30 H 1.08002 * 120.05041 * 179.75384 * 6 5 4 31 31 H 0.97010 * 119.99712 * 0.02562 * 10 8 7 32 32 H 0.96994 * 120.00235 * 179.97438 * 14 13 11 33 33 H 1.08001 * 120.04638 * 180.02562 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3515 1.5251 0.0005 5 6 4.1968 0.4208 -0.0048 6 6 5.5619 0.5965 0.0015 7 6 6.0986 1.8880 0.0020 8 6 7.5602 2.0813 0.0035 9 8 8.0246 3.2041 0.0044 10 7 8.3812 1.0124 0.0040 11 6 9.7027 1.1870 0.0049 12 1 10.1156 2.1850 0.0048 13 6 10.5969 0.0229 0.0048 14 7 10.1027 -1.1721 0.0034 15 14 12.4489 0.2676 0.0053 16 1 12.8475 1.0262 1.2181 17 1 13.1229 -1.0555 0.0045 18 1 12.8481 1.0268 -1.2069 19 6 5.2450 2.9955 0.0016 20 6 3.8808 2.8105 0.0002 21 7 2.9762 3.9821 -0.0008 22 8 3.4765 5.2004 0.0002 23 8 1.6709 3.8063 -0.0016 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 3.7815 -0.5762 -0.0097 30 1 6.2176 -0.2616 0.0014 31 1 8.0104 0.1160 0.0029 32 1 10.6935 -1.9413 0.0029 33 1 5.6553 3.9945 0.0015 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355535543.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:56 Heat of formation + Delta-G solvation = -22.320461 kcal Electronic energy + Delta-G solvation = -21100.564724 eV Core-core repulsion = 17517.574915 eV Total energy + Delta-G solvation = -3582.989808 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.79533 -38.86461 -38.40674 -36.90680 -34.36306 -34.01789 -32.52741 -31.98868 -31.41468 -30.03314 -26.42314 -25.35239 -24.17256 -22.80795 -21.73450 -19.97655 -19.04356 -18.46770 -17.85650 -17.50653 -16.56331 -16.31712 -15.71991 -15.54278 -15.08964 -14.57002 -14.16316 -13.92536 -13.81553 -13.44279 -13.39841 -12.83165 -12.58300 -12.11399 -12.06817 -11.93468 -11.41047 -11.36659 -10.97977 -10.96301 -10.77384 -10.70588 -10.45336 -10.33629 -9.88222 -9.57778 -8.66266 -8.61345 -8.49889 -7.04507 -3.92392 -0.35726 0.86813 1.27863 1.40932 2.72739 2.87792 3.00275 3.04130 3.14094 3.81431 4.07513 4.28348 4.40430 4.57704 4.63402 4.77271 4.91953 4.94357 4.99812 5.04295 5.23630 5.37607 5.53764 5.56775 5.71336 5.84497 5.93581 6.16035 6.28602 6.41001 6.84293 6.94095 7.10900 7.63772 8.13672 8.79820 9.12695 9.82715 10.09940 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.025127 B = 0.004094 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.087866 B = 6837.053324 C = 7930.693168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.046 3.954 3 O -0.281 6.281 4 C 0.182 3.818 5 C -0.210 4.210 6 C -0.023 4.023 7 C -0.116 4.116 8 C 0.429 3.571 9 O -0.601 6.601 10 N -0.506 5.506 11 C -0.324 4.324 12 H 0.118 0.882 13 C 0.036 3.964 14 N -0.843 5.843 15 Si 0.940 3.060 16 H -0.265 1.265 17 H -0.280 1.280 18 H -0.265 1.265 19 C 0.013 3.987 20 C -0.037 4.037 21 N -0.005 5.005 22 O -0.197 6.197 23 O -0.159 6.159 24 H 0.079 0.921 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.151 0.849 30 H 0.147 0.853 31 H 0.389 0.611 32 H 0.289 0.711 33 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.147 -6.128 -0.011 13.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.028 4.028 3 O -0.192 6.192 4 C 0.131 3.869 5 C -0.229 4.229 6 C -0.043 4.043 7 C -0.121 4.121 8 C 0.220 3.780 9 O -0.490 6.490 10 N -0.136 5.136 11 C -0.455 4.455 12 H 0.136 0.864 13 C -0.177 4.177 14 N -0.477 5.477 15 Si 0.765 3.235 16 H -0.190 1.190 17 H -0.205 1.205 18 H -0.190 1.190 19 C -0.007 4.007 20 C -0.125 4.125 21 N 0.471 4.529 22 O -0.383 6.383 23 O -0.356 6.356 24 H 0.097 0.903 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.168 0.832 30 H 0.165 0.835 31 H 0.223 0.777 32 H 0.101 0.899 33 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -11.459 -5.971 -0.011 12.922 hybrid contribution 0.446 -0.554 0.000 0.711 sum -11.014 -6.525 -0.011 12.802 Atomic orbital electron populations 1.21756 0.92082 1.02789 1.04117 1.23012 0.96624 0.81300 1.01911 1.86354 1.16843 1.29883 1.86129 1.18679 0.84123 0.91208 0.92874 1.21151 0.93704 0.97606 1.10416 1.21650 0.94516 0.97571 0.90613 1.20218 0.95995 0.91553 1.04356 1.17030 0.84145 0.85777 0.91010 1.90611 1.75848 1.22969 1.59561 1.40872 1.06765 1.07655 1.58261 1.20815 0.81034 0.94570 1.49057 0.86428 1.27005 1.01979 0.93685 0.95078 1.68612 1.39358 0.99336 1.40360 0.85750 0.79604 0.78022 0.80140 1.18960 1.20461 1.18967 1.20974 0.87882 1.02493 0.89401 1.19583 0.89378 0.81350 1.22203 1.50203 1.03247 1.03561 0.95930 1.96281 1.80297 1.04478 1.57258 1.96260 0.90724 1.94047 1.54606 0.90260 0.91181 0.91185 0.91389 0.91386 0.83175 0.83503 0.77693 0.89949 0.81370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.28 37.16 0.38 -0.71 16 2 C 0.05 0.41 5.45 37.16 0.20 0.61 16 3 O -0.28 -3.80 8.03 -40.97 -0.33 -4.13 16 4 C 0.18 2.66 6.69 -38.99 -0.26 2.40 16 5 C -0.21 -2.60 9.01 -39.49 -0.36 -2.95 16 6 C -0.02 -0.34 9.53 -39.19 -0.37 -0.71 16 7 C -0.12 -2.15 5.88 -104.96 -0.62 -2.76 16 8 C 0.43 9.96 7.69 -12.52 -0.10 9.86 16 9 O -0.60 -16.25 15.86 5.36 0.08 -16.17 16 10 N -0.51 -11.78 5.12 -10.70 -0.05 -11.83 16 11 C -0.32 -8.20 9.92 -13.46 -0.13 -8.33 16 12 H 0.12 3.17 7.19 -52.48 -0.38 2.79 16 13 C 0.04 0.83 5.69 -15.16 -0.09 0.75 16 14 N -0.84 -19.50 13.09 56.00 0.73 -18.77 16 15 Si 0.94 18.34 29.65 -169.99 -5.04 13.30 16 16 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 17 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 18 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 19 C 0.01 0.25 9.11 -39.19 -0.36 -0.11 16 20 C -0.04 -0.64 6.89 -79.87 -0.55 -1.19 16 21 N 0.00 -0.09 4.98 34.00 0.17 0.08 16 22 O -0.20 -3.96 19.14 -31.57 -0.60 -4.57 16 23 O -0.16 -3.01 17.87 -39.24 -0.70 -3.71 16 24 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.50 7.64 -51.93 -0.40 0.10 16 28 H 0.07 0.50 7.66 -51.93 -0.40 0.10 16 29 H 0.15 1.30 6.28 -52.49 -0.33 0.97 16 30 H 0.15 1.92 6.39 -52.49 -0.34 1.59 16 31 H 0.39 8.19 6.00 -40.82 -0.24 7.95 16 32 H 0.29 6.17 8.26 -40.82 -0.34 5.84 16 33 H 0.17 3.28 7.15 -52.49 -0.38 2.90 16 LS Contribution 302.22 15.07 4.55 4.55 Total: -1.00 -30.11 302.22 -6.29 -36.40 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -2.86 Total: 8.00 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -2.25 Total: -3.15 kcal Atomic # 7 Polarization: -31.37 SS G_CDS: 0.85 Total: -30.52 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -1.55 Total: -28.58 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.04 Total: 13.30 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.11 -6.29 -36.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355535543.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.083 kcal (2) G-P(sol) polarization free energy of solvation -30.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds