Wall clock time and date at job start Tue Mar 31 2020 01:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47255 * 2 1 4 4 C 1.35689 * 117.00153 * 179.97438 * 3 2 1 5 5 C 1.39070 * 119.90081 * 0.27727 * 4 3 2 6 6 C 1.37634 * 120.09120 * 180.27582 * 5 4 3 7 7 C 1.39861 * 119.90514 * 359.46885 * 6 5 4 8 8 C 1.47426 * 120.09899 * 180.23028 * 7 6 5 9 9 O 1.21512 * 120.00401 * 180.02562 * 8 7 6 10 10 N 1.34779 * 119.99943 * 0.02562 * 8 7 6 11 11 C 1.33302 * 120.00584 * 179.97438 * 10 8 7 12 12 H 1.08003 * 119.99650 * 359.97438 * 11 10 8 13 13 C 1.46781 * 120.00459 * 180.02562 * 11 10 8 14 14 N 1.29317 * 120.00264 * 0.02562 * 13 11 10 15 15 Si 1.86808 * 120.00265 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46922 * 59.99800 * 15 13 11 17 17 H 1.48495 * 109.47087 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46803 * 300.00193 * 15 13 11 19 19 C 1.39824 * 119.80761 * 0.26027 * 7 6 5 20 20 C 1.37675 * 119.90248 * 359.97438 * 19 7 6 21 21 N 1.48018 * 119.95073 * 180.02562 * 20 19 7 22 22 O 1.31701 * 119.99862 * 359.97438 * 21 20 19 23 23 O 1.31699 * 120.00346 * 180.02562 * 21 20 19 24 24 H 1.09004 * 109.47312 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47229 * 299.99885 * 1 2 3 26 26 H 1.08999 * 109.47216 * 59.99607 * 1 2 3 27 27 H 1.09007 * 109.47082 * 240.00395 * 2 1 3 28 28 H 1.08999 * 109.47216 * 120.00392 * 2 1 3 29 29 H 1.07998 * 119.95306 * 0.02562 * 5 4 3 30 30 H 1.08002 * 120.05041 * 179.75384 * 6 5 4 31 31 H 0.97010 * 119.99712 * 0.02562 * 10 8 7 32 32 H 0.96994 * 120.00235 * 179.97438 * 14 13 11 33 33 H 1.08001 * 120.04638 * 180.02562 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3515 1.5251 0.0005 5 6 4.1968 0.4208 -0.0048 6 6 5.5619 0.5965 0.0015 7 6 6.0986 1.8880 0.0020 8 6 7.5602 2.0813 0.0035 9 8 8.0246 3.2041 0.0044 10 7 8.3812 1.0124 0.0040 11 6 9.7027 1.1870 0.0049 12 1 10.1156 2.1850 0.0048 13 6 10.5969 0.0229 0.0048 14 7 10.1027 -1.1721 0.0034 15 14 12.4489 0.2676 0.0053 16 1 12.8475 1.0262 1.2181 17 1 13.1229 -1.0555 0.0045 18 1 12.8481 1.0268 -1.2069 19 6 5.2450 2.9955 0.0016 20 6 3.8808 2.8105 0.0002 21 7 2.9762 3.9821 -0.0008 22 8 3.4765 5.2004 0.0002 23 8 1.6709 3.8063 -0.0016 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 3.7815 -0.5762 -0.0097 30 1 6.2176 -0.2616 0.0014 31 1 8.0104 0.1160 0.0029 32 1 10.6935 -1.9413 0.0029 33 1 5.6553 3.9945 0.0015 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355535543.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:55 Heat of formation + Delta-G solvation = -41.546831 kcal Electronic energy + Delta-G solvation = -21101.398441 eV Core-core repulsion = 17517.574915 eV Total energy + Delta-G solvation = -3583.823526 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.07298 -40.42751 -39.82376 -38.33748 -36.19995 -35.51315 -34.03697 -33.25475 -32.59676 -31.27778 -27.92780 -26.90838 -25.22007 -24.22732 -22.83983 -21.56364 -20.62135 -19.94905 -19.27356 -18.90948 -17.80854 -17.61020 -17.10436 -16.81297 -16.74657 -15.94181 -15.62763 -15.62435 -15.09945 -14.87740 -14.42876 -13.98001 -13.80131 -13.33457 -13.21565 -13.11321 -12.94460 -12.53688 -12.48928 -12.43566 -12.10334 -12.00855 -11.89067 -11.77712 -11.62676 -10.85180 -10.57715 -10.41023 -9.79122 -8.78621 -5.83554 -1.80731 -0.46164 -0.05366 0.00288 1.33846 1.42661 1.49623 1.68731 1.71965 2.22264 2.42833 2.82405 3.13453 3.20721 3.34266 3.62208 3.70133 3.88000 4.08170 4.08248 4.23121 4.36571 4.43765 4.60341 4.74322 4.82280 4.93825 4.98338 5.07652 5.10675 5.30714 5.59739 5.77642 5.93239 6.36236 6.99261 7.35781 8.05028 8.35534 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.025127 B = 0.004094 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.087866 B = 6837.053324 C = 7930.693168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.029 3.971 3 O -0.294 6.294 4 C 0.213 3.787 5 C -0.185 4.185 6 C 0.006 3.994 7 C -0.136 4.136 8 C 0.425 3.575 9 O -0.650 6.650 10 N -0.506 5.506 11 C -0.383 4.383 12 H 0.084 0.916 13 C 0.016 3.984 14 N -0.855 5.855 15 Si 0.996 3.004 16 H -0.270 1.270 17 H -0.258 1.258 18 H -0.270 1.270 19 C 0.008 3.992 20 C -0.057 4.057 21 N -0.002 5.002 22 O -0.256 6.256 23 O -0.140 6.140 24 H 0.109 0.891 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.208 0.792 30 H 0.171 0.829 31 H 0.399 0.601 32 H 0.299 0.701 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.131 -10.073 -0.016 17.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.044 4.044 3 O -0.204 6.204 4 C 0.161 3.839 5 C -0.204 4.204 6 C -0.014 4.014 7 C -0.141 4.141 8 C 0.217 3.783 9 O -0.543 6.543 10 N -0.136 5.136 11 C -0.514 4.514 12 H 0.102 0.898 13 C -0.196 4.196 14 N -0.488 5.488 15 Si 0.818 3.182 16 H -0.195 1.195 17 H -0.182 1.182 18 H -0.195 1.195 19 C -0.014 4.014 20 C -0.147 4.147 21 N 0.469 4.531 22 O -0.428 6.428 23 O -0.345 6.345 24 H 0.127 0.873 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.225 0.775 30 H 0.188 0.812 31 H 0.235 0.765 32 H 0.111 0.889 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -13.420 -9.872 -0.017 16.660 hybrid contribution 0.620 0.499 0.002 0.796 sum -12.801 -9.373 -0.015 15.865 Atomic orbital electron populations 1.21824 0.91172 1.04483 1.03272 1.23590 0.97481 0.78947 1.04425 1.86389 1.15683 1.33691 1.84633 1.18888 0.85410 0.90338 0.89217 1.21650 0.91969 0.99156 1.07583 1.21904 0.96032 0.96061 0.87362 1.19818 0.93155 0.93586 1.07511 1.17733 0.86096 0.85028 0.89434 1.90560 1.77530 1.25078 1.61111 1.40695 1.06185 1.07916 1.58842 1.20585 0.82434 0.94099 1.54253 0.89806 1.27600 1.05070 0.93102 0.93808 1.68596 1.40723 0.99609 1.39888 0.84960 0.75214 0.78617 0.79430 1.19490 1.18184 1.19504 1.20694 0.88736 1.01573 0.90365 1.19687 0.88770 0.81910 1.24285 1.50386 1.03304 1.03944 0.95499 1.96297 1.80305 1.05312 1.60879 1.96216 0.91244 1.93999 1.53033 0.87264 0.92078 0.92079 0.88739 0.88748 0.77546 0.81210 0.76530 0.88940 0.84017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.28 71.98 0.74 -0.75 16 2 C 0.03 0.33 5.45 71.98 0.39 0.72 16 3 O -0.29 -6.61 8.03 -68.85 -0.55 -7.16 16 4 C 0.21 5.42 6.69 22.65 0.15 5.58 16 5 C -0.19 -3.52 9.01 22.33 0.20 -3.32 16 6 C 0.01 0.15 9.53 22.52 0.21 0.37 16 7 C -0.14 -5.02 5.88 -20.08 -0.12 -5.13 16 8 C 0.43 20.59 7.69 86.66 0.67 21.26 16 9 O -0.65 -37.77 15.86 -3.75 -0.06 -37.83 16 10 N -0.51 -24.21 5.12 -306.04 -1.57 -25.77 16 11 C -0.38 -20.30 9.92 86.71 0.86 -19.44 16 12 H 0.08 4.89 7.19 -2.91 -0.02 4.87 16 13 C 0.02 0.77 5.69 87.30 0.50 1.27 16 14 N -0.86 -38.74 13.09 23.25 0.30 -38.44 16 15 Si 1.00 37.65 29.65 68.60 2.03 39.68 16 16 H -0.27 -10.35 7.11 99.48 0.71 -9.65 16 17 H -0.26 -8.79 7.11 99.48 0.71 -8.08 16 18 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 19 C 0.01 0.29 9.11 22.52 0.21 0.49 16 20 C -0.06 -1.94 6.89 36.43 0.25 -1.69 16 21 N 0.00 -0.07 4.98 -46.34 -0.23 -0.30 16 22 O -0.26 -10.93 19.14 3.51 0.07 -10.86 16 23 O -0.14 -5.13 17.87 10.85 0.19 -4.93 16 24 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 25 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.09 0.68 7.64 -2.38 -0.02 0.66 16 28 H 0.09 0.68 7.66 -2.39 -0.02 0.66 16 29 H 0.21 1.75 6.28 -2.91 -0.02 1.74 16 30 H 0.17 3.69 6.39 -2.91 -0.02 3.67 16 31 H 0.40 16.67 6.00 -92.70 -0.56 16.12 16 32 H 0.30 12.25 8.26 -92.71 -0.77 11.48 16 33 H 0.14 6.08 7.15 -2.91 -0.02 6.06 16 Total: -1.00 -71.42 302.22 4.88 -66.54 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 0.63 Total: 19.72 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: 4.06 Total: -0.66 kcal Atomic # 7 Polarization: -63.02 SS G_CDS: -1.49 Total: -64.51 kcal Atomic # 8 Polarization: -60.43 SS G_CDS: -0.35 Total: -60.78 kcal Atomic # 14 Polarization: 37.65 SS G_CDS: 2.03 Total: 39.68 kcal Total: -71.42 4.88 -66.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355535543.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.992 kcal (2) G-P(sol) polarization free energy of solvation -71.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds