Wall clock time and date at job start Tue Mar 31 2020 01:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45208 * 109.46569 * 2 1 4 4 C 1.34709 * 116.99549 * 179.97438 * 3 2 1 5 5 O 1.21474 * 120.00598 * 0.02562 * 4 3 2 6 6 C 1.47750 * 120.00176 * 180.02562 * 4 3 2 7 7 C 1.39679 * 120.10624 * 359.97330 * 6 4 3 8 8 C 1.37989 * 120.00855 * 180.02562 * 7 6 4 9 9 C 1.38227 * 120.24033 * 359.75496 * 8 7 6 10 10 C 1.39052 * 120.22161 * 0.50137 * 9 8 7 11 11 S 1.76206 * 120.00649 * 179.76641 * 10 9 8 12 12 C 1.81401 * 102.99841 * 359.72942 * 11 10 9 13 13 C 1.52997 * 109.47149 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47466 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99890 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99563 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00432 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46616 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47104 * 119.99966 * 18 16 14 21 21 H 1.48489 * 109.47200 * 240.00246 * 18 16 14 22 22 C 1.38725 * 119.98608 * 359.49731 * 10 9 8 23 23 H 1.08998 * 109.46840 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47548 * 300.00175 * 1 2 3 25 25 H 1.09001 * 109.47288 * 60.00364 * 1 2 3 26 26 H 1.08998 * 109.47243 * 240.00234 * 2 1 3 27 27 H 1.09001 * 109.47288 * 119.99636 * 2 1 3 28 28 H 1.07996 * 119.99902 * 0.02562 * 7 6 4 29 29 H 1.07999 * 119.87719 * 180.02562 * 8 7 6 30 30 H 1.08001 * 119.89382 * 180.25186 * 9 8 7 31 31 H 1.09002 * 109.47085 * 299.99758 * 12 11 10 32 32 H 1.09001 * 109.47417 * 59.99884 * 12 11 10 33 33 H 1.09002 * 109.47153 * 299.99990 * 13 12 11 34 34 H 1.08998 * 109.47533 * 59.99620 * 13 12 11 35 35 H 0.97002 * 119.99731 * 180.02562 * 17 16 14 36 36 H 1.08003 * 120.12108 * 180.22825 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3691 0.0000 4 6 3.3494 1.5456 0.0005 5 8 4.0894 0.5823 0.0005 6 6 3.9141 2.9109 0.0011 7 6 3.0653 4.0202 0.0006 8 6 3.5949 5.2944 0.0006 9 6 4.9648 5.4789 0.0063 10 6 5.8189 4.3816 0.0015 11 16 7.5642 4.6234 0.0026 12 6 7.7259 6.4302 0.0021 13 6 9.2080 6.8097 0.0036 14 6 9.3424 8.3106 0.0026 15 1 8.4589 8.9318 0.0015 16 6 10.5931 8.8909 0.0042 17 7 11.6689 8.1344 0.0061 18 14 10.7596 10.7515 0.0022 19 1 9.4092 11.3692 -0.0004 20 1 11.4987 11.1836 1.2156 21 1 11.5031 11.1806 -1.2094 22 6 5.2965 3.0965 0.0015 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.9944 3.8807 0.0002 29 1 2.9367 6.1506 0.0006 30 1 5.3733 6.4787 0.0104 31 1 7.2470 6.8376 -0.8883 32 1 7.2458 6.8382 0.8917 33 1 9.6865 6.4023 0.8943 34 1 9.6885 6.4017 -0.8856 35 1 12.5488 8.5426 0.0076 36 1 5.9578 2.2426 0.0015 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357083675.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:27 Heat of formation + Delta-G solvation = -80.160158 kcal Electronic energy + Delta-G solvation = -18062.296117 eV Core-core repulsion = 15023.091406 eV Total energy + Delta-G solvation = -3039.204711 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.70072 -38.76292 -36.73536 -33.84189 -32.39396 -31.44777 -31.08426 -30.78960 -25.66604 -24.82101 -23.20256 -22.83984 -21.24245 -20.99192 -18.45929 -17.32082 -16.77933 -16.66993 -16.09552 -15.67897 -15.07749 -14.54938 -14.47521 -14.17398 -14.00378 -13.65864 -13.53292 -13.11446 -12.93069 -12.30277 -12.23087 -12.00127 -11.93365 -11.62314 -11.31395 -11.12414 -10.82082 -10.70421 -10.61074 -10.42824 -9.85569 -9.74875 -9.71074 -9.19429 -9.17862 -8.49936 -7.12241 -6.13519 -4.18696 0.56769 1.19203 1.84637 2.39108 2.43485 2.93073 3.24154 3.32029 3.35150 3.63042 4.35802 4.40583 4.58920 4.64176 4.74681 4.92493 4.97198 5.08968 5.22484 5.23523 5.35702 5.41430 5.52212 5.61218 5.73593 5.79211 5.96798 6.06084 6.13218 6.22981 6.26123 6.55448 6.65701 7.44597 7.51088 7.56108 7.81209 8.17246 8.85918 9.45894 10.97277 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.051840 B = 0.002731 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.998628 B =10250.281737 C =10759.229291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.354 6.354 4 C 0.513 3.487 5 O -0.505 6.505 6 C -0.114 4.114 7 C -0.080 4.080 8 C -0.112 4.112 9 C -0.100 4.100 10 C -0.086 4.086 11 S -0.127 6.127 12 C -0.083 4.083 13 C 0.036 3.964 14 C -0.522 4.522 15 H 0.059 0.941 16 C 0.060 3.940 17 N -0.889 5.889 18 Si 0.898 3.102 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.042 4.042 23 H 0.080 0.920 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.136 0.864 29 H 0.133 0.867 30 H 0.136 0.864 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.029 0.971 34 H 0.029 0.971 35 H 0.263 0.737 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.510 -11.449 -0.006 24.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.271 6.271 4 C 0.358 3.642 5 O -0.394 6.394 6 C -0.117 4.117 7 C -0.102 4.102 8 C -0.131 4.131 9 C -0.125 4.125 10 C -0.199 4.199 11 S 0.121 5.879 12 C -0.231 4.231 13 C -0.003 4.003 14 C -0.562 4.562 15 H 0.077 0.923 16 C -0.143 4.143 17 N -0.527 5.527 18 Si 0.726 3.274 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.208 1.208 22 C -0.067 4.067 23 H 0.098 0.902 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.154 0.846 29 H 0.151 0.849 30 H 0.154 0.846 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.073 0.927 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -20.092 -12.539 -0.006 23.684 hybrid contribution -0.800 1.739 0.000 1.914 sum -20.892 -10.800 -0.006 23.519 Atomic orbital electron populations 1.21809 0.92503 1.03023 1.03604 1.23051 0.95365 0.79994 1.02783 1.86540 1.23827 1.32423 1.84333 1.21187 0.80508 0.89881 0.72615 1.90841 1.60361 1.42474 1.45752 1.18916 0.93498 0.89861 1.09376 1.21352 0.99904 0.91547 0.97409 1.21055 0.94765 0.97097 1.00223 1.21633 0.93733 0.98725 0.98371 1.21985 0.99241 0.95475 1.03207 1.85851 0.97543 1.13976 1.90498 1.24081 1.06492 0.88528 1.04015 1.18937 0.85660 0.96879 0.98795 1.21075 0.92481 0.90574 1.52066 0.92262 1.25024 0.95801 0.98543 0.94927 1.69978 0.97867 1.35145 1.49752 0.86437 0.78232 0.85022 0.77732 1.19658 1.20851 1.20845 1.20851 0.93180 0.96294 0.96327 0.90173 0.91400 0.91406 0.91099 0.91098 0.84596 0.84914 0.84638 0.90397 0.90402 0.95300 0.95302 0.92719 0.84136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 10.29 37.16 0.38 -0.44 16 2 C 0.06 0.51 6.20 37.16 0.23 0.74 16 3 O -0.35 -3.86 9.47 -40.51 -0.38 -4.25 16 4 C 0.51 6.81 7.90 34.62 0.27 7.08 16 5 O -0.51 -7.91 16.13 -19.25 -0.31 -8.22 16 6 C -0.11 -1.50 5.87 -105.01 -0.62 -2.12 16 7 C -0.08 -0.89 9.61 -39.13 -0.38 -1.27 16 8 C -0.11 -1.24 10.02 -39.68 -0.40 -1.64 16 9 C -0.10 -1.36 9.36 -39.28 -0.37 -1.73 16 10 C -0.09 -1.33 6.11 -39.10 -0.24 -1.57 16 11 S -0.13 -2.30 21.92 -107.50 -2.36 -4.66 16 12 C -0.08 -1.64 4.27 37.16 0.16 -1.48 16 13 C 0.04 0.90 4.98 -27.89 -0.14 0.76 16 14 C -0.52 -14.09 9.11 -34.44 -0.31 -14.40 16 15 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 18 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 C -0.04 -0.62 9.34 -38.94 -0.36 -0.99 16 23 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 24 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.14 1.19 7.60 -52.49 -0.40 0.79 16 29 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 30 H 0.14 1.81 5.86 -52.49 -0.31 1.50 16 31 H 0.08 1.45 7.76 -51.92 -0.40 1.05 16 32 H 0.08 1.45 7.73 -51.92 -0.40 1.05 16 33 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.14 2.11 7.65 -52.48 -0.40 1.71 16 LS Contribution 327.86 15.07 4.94 4.94 Total: -1.00 -30.42 327.86 -9.09 -39.51 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: -4.83 Total: -2.47 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: -1.87 Total: -15.49 kcal Atomic # 7 Polarization: -26.00 SS G_CDS: 0.74 Total: -25.26 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: -0.69 Total: -12.46 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: -2.30 SS G_CDS: -2.36 Total: -4.66 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.42 -9.09 -39.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357083675.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.647 kcal (2) G-P(sol) polarization free energy of solvation -30.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds