Wall clock time and date at job start Tue Mar 31 2020 01:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45208 * 109.46569 * 2 1 4 4 C 1.34709 * 116.99549 * 179.97438 * 3 2 1 5 5 O 1.21474 * 120.00598 * 0.02562 * 4 3 2 6 6 C 1.47750 * 120.00176 * 180.02562 * 4 3 2 7 7 C 1.39679 * 120.10624 * 359.97330 * 6 4 3 8 8 C 1.37989 * 120.00855 * 180.02562 * 7 6 4 9 9 C 1.38227 * 120.24033 * 359.75496 * 8 7 6 10 10 C 1.39052 * 120.22161 * 0.50137 * 9 8 7 11 11 S 1.76206 * 120.00649 * 179.76641 * 10 9 8 12 12 C 1.81401 * 102.99841 * 359.72942 * 11 10 9 13 13 C 1.52997 * 109.47149 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47466 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99890 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99563 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00432 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46616 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47104 * 119.99966 * 18 16 14 21 21 H 1.48489 * 109.47200 * 240.00246 * 18 16 14 22 22 C 1.38725 * 119.98608 * 359.49731 * 10 9 8 23 23 H 1.08998 * 109.46840 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47548 * 300.00175 * 1 2 3 25 25 H 1.09001 * 109.47288 * 60.00364 * 1 2 3 26 26 H 1.08998 * 109.47243 * 240.00234 * 2 1 3 27 27 H 1.09001 * 109.47288 * 119.99636 * 2 1 3 28 28 H 1.07996 * 119.99902 * 0.02562 * 7 6 4 29 29 H 1.07999 * 119.87719 * 180.02562 * 8 7 6 30 30 H 1.08001 * 119.89382 * 180.25186 * 9 8 7 31 31 H 1.09002 * 109.47085 * 299.99758 * 12 11 10 32 32 H 1.09001 * 109.47417 * 59.99884 * 12 11 10 33 33 H 1.09002 * 109.47153 * 299.99990 * 13 12 11 34 34 H 1.08998 * 109.47533 * 59.99620 * 13 12 11 35 35 H 0.97002 * 119.99731 * 180.02562 * 17 16 14 36 36 H 1.08003 * 120.12108 * 180.22825 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3691 0.0000 4 6 3.3494 1.5456 0.0005 5 8 4.0894 0.5823 0.0005 6 6 3.9141 2.9109 0.0011 7 6 3.0653 4.0202 0.0006 8 6 3.5949 5.2944 0.0006 9 6 4.9648 5.4789 0.0063 10 6 5.8189 4.3816 0.0015 11 16 7.5642 4.6234 0.0026 12 6 7.7259 6.4302 0.0021 13 6 9.2080 6.8097 0.0036 14 6 9.3424 8.3106 0.0026 15 1 8.4589 8.9318 0.0015 16 6 10.5931 8.8909 0.0042 17 7 11.6689 8.1344 0.0061 18 14 10.7596 10.7515 0.0022 19 1 9.4092 11.3692 -0.0004 20 1 11.4987 11.1836 1.2156 21 1 11.5031 11.1806 -1.2094 22 6 5.2965 3.0965 0.0015 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.9944 3.8807 0.0002 29 1 2.9367 6.1506 0.0006 30 1 5.3733 6.4787 0.0104 31 1 7.2470 6.8376 -0.8883 32 1 7.2458 6.8382 0.8917 33 1 9.6865 6.4023 0.8943 34 1 9.6885 6.4017 -0.8856 35 1 12.5488 8.5426 0.0076 36 1 5.9578 2.2426 0.0015 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357083675.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:27 Heat of formation + Delta-G solvation = -95.269950 kcal Electronic energy + Delta-G solvation = -18062.951327 eV Core-core repulsion = 15023.091406 eV Total energy + Delta-G solvation = -3039.859921 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.69141 -39.77305 -37.70737 -35.83567 -33.35207 -32.90464 -32.11651 -31.98377 -27.48635 -25.92388 -24.21161 -23.77911 -22.84033 -22.05961 -19.51685 -18.71519 -18.29578 -17.64527 -17.21464 -16.90852 -16.48651 -16.13136 -15.71636 -15.32011 -15.23808 -14.80998 -14.57872 -14.03892 -14.01569 -13.70786 -13.59769 -12.99363 -12.93645 -12.81847 -12.69782 -12.48965 -12.34091 -12.28254 -11.74628 -11.70796 -11.56384 -11.35609 -11.02860 -10.86894 -10.61570 -10.20426 -8.50045 -8.23930 -6.37163 -0.46942 0.15026 0.49111 1.36378 1.42233 1.42582 1.49333 1.55306 1.56187 2.40525 2.60937 3.10274 3.51047 3.78013 3.97553 4.01065 4.06817 4.11107 4.18044 4.25019 4.31998 4.34372 4.47587 4.75370 4.77631 4.83894 4.94485 5.07251 5.11929 5.17721 5.26778 5.35979 5.37908 5.44684 5.68594 5.72175 6.08508 6.57811 6.77217 7.32601 8.88126 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.051840 B = 0.002731 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.998628 B =10250.281737 C =10759.229291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.052 3.948 3 O -0.348 6.348 4 C 0.516 3.484 5 O -0.538 6.538 6 C -0.123 4.123 7 C -0.060 4.060 8 C -0.099 4.099 9 C -0.104 4.104 10 C -0.098 4.098 11 S -0.164 6.164 12 C -0.066 4.066 13 C 0.041 3.959 14 C -0.538 4.538 15 H 0.072 0.928 16 C 0.000 4.000 17 N -0.932 5.932 18 Si 0.972 3.028 19 H -0.256 1.256 20 H -0.280 1.280 21 H -0.280 1.280 22 C -0.054 4.054 23 H 0.100 0.900 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.169 0.831 29 H 0.173 0.827 30 H 0.139 0.861 31 H 0.089 0.911 32 H 0.089 0.911 33 H -0.001 1.001 34 H -0.001 1.001 35 H 0.265 0.735 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.065 -10.124 -0.009 27.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.021 4.021 3 O -0.264 6.264 4 C 0.362 3.638 5 O -0.429 6.429 6 C -0.126 4.126 7 C -0.081 4.081 8 C -0.119 4.119 9 C -0.128 4.128 10 C -0.211 4.211 11 S 0.082 5.918 12 C -0.213 4.213 13 C 0.002 3.998 14 C -0.577 4.577 15 H 0.090 0.910 16 C -0.199 4.199 17 N -0.572 5.572 18 Si 0.796 3.204 19 H -0.180 1.180 20 H -0.205 1.205 21 H -0.205 1.205 22 C -0.078 4.078 23 H 0.119 0.881 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.187 0.813 29 H 0.191 0.809 30 H 0.157 0.843 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.018 0.982 34 H 0.018 0.982 35 H 0.074 0.926 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -23.702 -11.211 -0.008 26.220 hybrid contribution 0.142 1.192 0.001 1.200 sum -23.560 -10.020 -0.008 25.602 Atomic orbital electron populations 1.21829 0.89869 1.04516 1.03976 1.23383 0.97341 0.78689 1.02713 1.86530 1.22163 1.34081 1.83637 1.21225 0.81150 0.89517 0.71859 1.90829 1.61273 1.43445 1.47389 1.19011 0.92987 0.90818 1.09744 1.21753 1.01204 0.90652 0.94453 1.21469 0.93886 0.98421 0.98077 1.21827 0.94856 0.98114 0.98009 1.21777 0.96932 0.96510 1.05888 1.85883 1.01476 1.12592 1.91807 1.23686 1.02780 0.89825 1.05058 1.18715 0.88904 0.96194 0.95961 1.21539 0.93068 0.91742 1.51367 0.90971 1.26038 0.95486 1.03922 0.94450 1.70122 0.98506 1.37503 1.51028 0.85284 0.78818 0.78591 0.77657 1.17971 1.20539 1.20535 1.20762 0.94103 0.95652 0.97299 0.88145 0.90989 0.90995 0.91262 0.91262 0.81325 0.80917 0.84324 0.89256 0.89254 0.98215 0.98220 0.92601 0.85599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.29 71.98 0.74 -0.43 16 2 C 0.05 0.78 6.20 71.98 0.45 1.22 16 3 O -0.35 -6.86 9.47 -56.19 -0.53 -7.39 16 4 C 0.52 13.20 7.90 70.34 0.56 13.75 16 5 O -0.54 -16.99 16.13 19.92 0.32 -16.67 16 6 C -0.12 -3.06 5.87 -20.12 -0.12 -3.18 16 7 C -0.06 -1.10 9.61 22.56 0.22 -0.89 16 8 C -0.10 -1.80 10.02 22.21 0.22 -1.57 16 9 C -0.10 -2.61 9.36 22.46 0.21 -2.40 16 10 C -0.10 -3.02 6.11 22.58 0.14 -2.88 16 11 S -0.16 -6.15 21.92 -56.49 -1.24 -7.39 16 12 C -0.07 -2.62 4.27 71.98 0.31 -2.31 16 13 C 0.04 2.12 4.98 29.85 0.15 2.27 16 14 C -0.54 -29.28 9.11 25.60 0.23 -29.05 16 15 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 16 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 17 N -0.93 -56.00 13.29 21.45 0.28 -55.72 16 18 Si 0.97 42.80 29.54 68.60 2.03 44.83 16 19 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 20 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 21 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 22 C -0.05 -1.60 9.34 22.69 0.21 -1.39 16 23 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 24 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 25 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.17 2.06 7.60 -2.91 -0.02 2.04 16 29 H 0.17 1.83 8.06 -2.91 -0.02 1.80 16 30 H 0.14 3.38 5.86 -2.91 -0.02 3.36 16 31 H 0.09 3.30 7.76 -2.39 -0.02 3.28 16 32 H 0.09 3.30 7.73 -2.39 -0.02 3.28 16 33 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 34 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 35 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 36 H 0.13 4.02 7.65 -2.91 -0.02 3.99 16 Total: -1.00 -68.03 327.86 5.71 -62.32 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: 1.07 Total: 6.42 kcal Atomic # 6 Polarization: -30.18 SS G_CDS: 3.77 Total: -26.41 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: 0.28 Total: -55.72 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -0.21 Total: -24.06 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Atomic # 16 Polarization: -6.15 SS G_CDS: -1.24 Total: -7.39 kcal Total: -68.03 5.71 -62.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357083675.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.945 kcal (2) G-P(sol) polarization free energy of solvation -68.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds