Wall clock time and date at job start Tue Mar 31 2020 01:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00119 * 2 1 4 4 H 1.48498 * 109.47483 * 270.00711 * 3 2 1 5 5 H 1.48503 * 109.47052 * 30.00428 * 3 2 1 6 6 H 1.48497 * 109.47029 * 150.00036 * 3 2 1 7 7 C 1.37872 * 119.99699 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99754 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00378 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47294 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47086 * 179.97438 * 10 9 7 12 12 S 1.81402 * 109.46844 * 179.97438 * 11 10 9 13 13 C 1.81408 * 102.99759 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.46881 * 180.02562 * 13 12 11 15 15 C 1.38247 * 119.92634 * 270.01907 * 14 13 12 16 16 C 1.38240 * 120.14459 * 179.75199 * 15 14 13 17 17 C 1.38552 * 120.02633 * 0.42901 * 16 15 14 18 18 C 1.39265 * 119.82706 * 359.57585 * 17 16 15 19 19 C 1.38231 * 119.92969 * 90.00319 * 14 13 12 20 20 O 1.36496 * 108.64230 * 180.24572 * 18 17 16 21 21 C 1.43981 * 105.48444 * 342.72036 * 20 18 17 22 22 O 1.36505 * 131.53353 * 179.87931 * 17 16 15 23 23 H 0.96998 * 119.99716 * 359.97438 * 1 2 3 24 24 H 1.08994 * 109.47404 * 59.99989 * 9 7 2 25 25 H 1.09003 * 109.47035 * 299.99619 * 9 7 2 26 26 H 1.09006 * 109.47216 * 60.00006 * 10 9 7 27 27 H 1.08995 * 109.47262 * 300.00004 * 10 9 7 28 28 H 1.08994 * 109.47378 * 60.00027 * 11 10 9 29 29 H 1.09004 * 109.47005 * 300.00006 * 11 10 9 30 30 H 1.08993 * 109.46852 * 60.00243 * 13 12 11 31 31 H 1.08998 * 109.46708 * 300.00119 * 13 12 11 32 32 H 1.07994 * 119.93290 * 0.02562 * 15 14 13 33 33 H 1.07997 * 119.99327 * 180.33354 * 16 15 14 34 34 H 1.08003 * 119.98943 * 0.02562 * 19 14 13 35 35 H 1.09007 * 110.56955 * 268.54960 * 21 20 18 36 36 H 1.09003 * 110.57719 * 145.67764 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4802 -4.9871 0.0001 12 16 2.6590 -6.3659 -0.0007 13 6 1.5807 -7.8246 0.0010 14 6 2.4247 -9.0731 0.0012 15 6 2.8104 -9.6450 -1.1969 16 6 3.5889 -10.7874 -1.2020 17 6 3.9771 -11.3672 -0.0050 18 6 3.5885 -10.7911 1.2019 19 6 2.8117 -9.6438 1.1992 20 8 4.0960 -11.5381 2.2254 21 6 4.4541 -12.8026 1.6375 22 8 4.7281 -12.4753 0.2624 23 1 -0.4849 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8902 25 1 0.6247 -2.5571 0.8897 26 1 2.8719 -3.6043 0.8895 27 1 2.8719 -3.6043 -0.8905 28 1 0.8532 -5.0451 -0.8896 29 1 0.8538 -5.0445 0.8904 30 1 0.9506 -7.8117 -0.8883 31 1 0.9525 -7.8110 0.8917 32 1 2.5067 -9.1960 -2.1309 33 1 3.8933 -11.2290 -2.1393 34 1 2.5088 -9.1950 2.1338 35 1 3.6238 -13.5056 1.7058 36 1 5.3432 -13.2107 2.1185 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358548478.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:04 Heat of formation + Delta-G solvation = -73.831290 kcal Electronic energy + Delta-G solvation = -17983.382748 eV Core-core repulsion = 14944.452478 eV Total energy + Delta-G solvation = -3038.930271 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.15794 -39.23339 -37.31685 -36.34268 -34.03022 -33.19761 -31.46335 -29.43844 -28.19874 -26.44951 -25.31361 -24.01600 -23.10192 -21.98965 -18.95174 -18.70837 -18.46527 -18.37637 -17.26158 -16.92723 -16.54172 -16.22728 -15.59741 -15.49349 -15.20262 -14.89875 -14.77756 -14.42208 -14.02765 -13.97542 -13.88611 -13.53667 -13.31705 -13.11132 -12.74400 -12.72741 -12.39949 -12.12108 -11.88186 -11.63522 -11.36410 -11.14170 -10.84787 -10.55708 -9.87903 -9.05431 -8.63418 -8.20877 -6.31603 -0.18277 0.17393 0.91342 1.40882 1.41803 1.53179 1.65969 1.78648 2.41394 2.48976 2.60199 3.12520 3.43701 3.61179 3.77943 3.90215 4.05210 4.08068 4.13920 4.17010 4.27406 4.35841 4.56022 4.58803 4.62719 4.84646 4.97237 5.00335 5.03153 5.15228 5.17671 5.35132 5.44296 5.49970 5.69920 5.83229 6.07953 6.23360 6.84130 7.37503 8.90769 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.049208 B = 0.002408 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.882024 B =11627.025986 C =11736.277600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.964 3.036 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.057 0.943 9 C 0.031 3.969 10 C -0.082 4.082 11 C -0.068 4.068 12 S -0.290 6.290 13 C -0.034 4.034 14 C -0.065 4.065 15 C -0.086 4.086 16 C -0.101 4.101 17 C 0.020 3.980 18 C 0.013 3.987 19 C -0.092 4.092 20 O -0.327 6.327 21 C 0.204 3.796 22 O -0.323 6.323 23 H 0.264 0.736 24 H -0.002 1.002 25 H -0.003 1.003 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.113 0.887 31 H 0.102 0.898 32 H 0.163 0.837 33 H 0.159 0.841 34 H 0.140 0.860 35 H 0.106 0.894 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.021 -27.366 -0.094 27.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.788 3.212 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.583 4.583 8 H 0.076 0.924 9 C -0.008 4.008 10 C -0.120 4.120 11 C -0.216 4.216 12 S -0.060 6.060 13 C -0.181 4.181 14 C -0.067 4.067 15 C -0.106 4.106 16 C -0.119 4.119 17 C -0.026 4.026 18 C -0.032 4.032 19 C -0.113 4.113 20 O -0.244 6.244 21 C 0.094 3.906 22 O -0.240 6.240 23 H 0.073 0.927 24 H 0.017 0.983 25 H 0.015 0.985 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.131 0.869 31 H 0.120 0.880 32 H 0.180 0.820 33 H 0.177 0.823 34 H 0.158 0.842 35 H 0.123 0.877 36 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 6.153 -27.283 0.023 27.968 hybrid contribution -1.029 0.808 0.340 1.351 sum 5.124 -26.475 0.362 26.968 Atomic orbital electron populations 1.70080 1.07664 1.27829 1.51574 1.25949 0.95807 1.03257 0.94681 0.85461 0.78636 0.78501 0.78553 1.19675 1.20596 1.18981 1.21671 0.93517 0.92422 1.50705 0.92439 1.18979 0.94170 0.92310 0.95338 1.21167 0.98010 0.91737 1.01117 1.23369 0.98826 0.94425 1.05025 1.87222 1.18902 1.01649 1.98211 1.22252 0.97944 0.90321 1.07610 1.18996 0.99875 0.95153 0.92671 1.21138 0.96665 0.94103 0.98696 1.20357 0.99101 0.96724 0.95710 1.20126 0.96281 0.90682 0.95467 1.19879 1.00200 0.97238 0.85853 1.20062 0.97564 0.93911 0.99713 1.87337 1.77749 1.27190 1.32135 1.26125 1.03991 0.85229 0.75274 1.87326 1.62778 1.43010 1.30868 0.92688 0.98333 0.98497 0.92950 0.92681 0.89720 0.90080 0.86861 0.87957 0.81981 0.82318 0.84204 0.87665 0.82308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.38 13.29 21.45 0.28 -56.09 16 2 C 0.00 0.06 5.46 84.65 0.46 0.52 16 3 Si 0.96 44.45 29.54 68.60 2.03 46.48 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 7 C -0.55 -31.27 9.11 25.60 0.23 -31.04 16 8 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 9 C 0.03 1.61 4.97 29.85 0.15 1.76 16 10 C -0.08 -3.40 5.16 30.60 0.16 -3.24 16 11 C -0.07 -2.25 5.94 71.98 0.43 -1.83 16 12 S -0.29 -8.35 21.72 -56.49 -1.23 -9.58 16 13 C -0.03 -0.69 6.07 71.24 0.43 -0.25 16 14 C -0.07 -1.30 5.14 -19.86 -0.10 -1.40 16 15 C -0.09 -1.48 9.69 22.27 0.22 -1.26 16 16 C -0.10 -1.75 10.06 22.35 0.22 -1.52 16 17 C 0.02 0.41 7.15 22.59 0.16 0.58 16 18 C 0.01 0.28 7.15 22.59 0.16 0.44 16 19 C -0.09 -1.99 9.71 22.34 0.22 -1.77 16 20 O -0.33 -6.95 11.40 -76.01 -0.87 -7.82 16 21 C 0.20 2.75 8.89 113.37 1.01 3.76 16 22 O -0.32 -6.30 11.40 -76.10 -0.87 -7.17 16 23 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 24 H 0.00 -0.10 8.14 -2.39 -0.02 -0.11 16 25 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 26 H 0.05 2.21 8.14 -2.38 -0.02 2.19 16 27 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 29 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 30 H 0.11 1.86 8.08 -2.39 -0.02 1.84 16 31 H 0.10 1.85 8.08 -2.39 -0.02 1.83 16 32 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 33 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 34 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 35 H 0.11 0.91 8.14 -2.38 -0.02 0.89 16 36 H 0.16 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -68.81 324.70 4.16 -64.65 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: 1.06 Total: 4.78 kcal Atomic # 6 Polarization: -39.00 SS G_CDS: 3.75 Total: -35.25 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: 0.28 Total: -56.09 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -1.73 Total: -14.99 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 16 Polarization: -8.35 SS G_CDS: -1.23 Total: -9.58 kcal Total: -68.81 4.16 -64.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358548478.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.180 kcal (2) G-P(sol) polarization free energy of solvation -68.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds