Wall clock time and date at job start Tue Mar 31 2020 01:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86793 * 119.99625 * 2 1 4 4 H 1.48499 * 109.47334 * 269.99933 * 3 2 1 5 5 H 1.48495 * 109.47577 * 30.00605 * 3 2 1 6 6 H 1.48507 * 109.46703 * 150.00253 * 3 2 1 7 7 C 1.39942 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00116 * 197.86313 * 7 2 1 9 9 C 1.41395 * 120.00206 * 17.85944 * 7 2 1 10 10 C 1.40721 * 120.24470 * 24.39649 * 9 7 2 11 11 C 1.37614 * 119.74681 * 179.97438 * 10 9 7 12 12 C 1.38634 * 120.24598 * 0.02562 * 11 10 9 13 13 C 1.50707 * 119.74561 * 180.02562 * 12 11 10 14 14 S 1.81404 * 109.47150 * 89.99696 * 13 12 11 15 15 O 1.42100 * 109.46774 * 296.38432 * 14 13 12 16 16 C 1.81395 * 102.99743 * 179.97438 * 14 13 12 17 17 H 1.08998 * 110.75706 * 292.97894 * 16 14 13 18 18 C 1.55309 * 110.84889 * 169.28644 * 16 14 13 19 19 C 1.54944 * 100.94406 * 207.68197 * 18 16 14 20 20 O 1.43645 * 105.13797 * 36.43765 * 19 18 16 21 21 C 1.43231 * 109.97184 * 335.57762 * 20 19 18 22 22 C 1.38632 * 120.50495 * 0.26990 * 12 11 10 23 23 C 1.37624 * 120.24514 * 359.45158 * 22 12 11 24 24 H 0.97001 * 120.00408 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.12432 * 359.95712 * 10 9 7 26 26 H 1.08001 * 119.87280 * 179.97438 * 11 10 9 27 27 H 1.08997 * 109.47299 * 329.99365 * 13 12 11 28 28 H 1.08994 * 109.46649 * 209.99762 * 13 12 11 29 29 H 1.08992 * 111.12496 * 89.75599 * 18 16 14 30 30 H 1.09008 * 111.11883 * 325.59368 * 18 16 14 31 31 H 1.08998 * 110.30462 * 277.52745 * 19 18 16 32 32 H 1.08999 * 110.30981 * 155.36046 * 19 18 16 33 33 H 1.09003 * 109.83183 * 121.22317 * 21 20 19 34 34 H 1.09000 * 109.82792 * 242.10107 * 21 20 19 35 35 H 1.07998 * 119.87445 * 179.71111 * 22 12 11 36 36 H 1.08001 * 120.12363 * 180.27687 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0465 -1.4000 5 1 1.4397 2.6526 0.7001 6 1 3.5398 1.4401 0.7000 7 6 2.0080 -1.2119 -0.0005 8 1 3.0489 -1.2346 0.2863 9 6 1.3522 -2.4068 -0.3766 10 6 0.2211 -2.3616 -1.2125 11 6 -0.4090 -3.5309 -1.5726 12 6 0.0663 -4.7500 -1.1145 13 6 -0.6320 -6.0236 -1.5163 14 16 0.0996 -6.6561 -3.0511 15 8 -0.1238 -5.7250 -4.1010 16 6 -0.8561 -8.1651 -3.3670 17 1 -0.6534 -8.9174 -2.6047 18 6 -0.5618 -8.7186 -4.7879 19 6 -1.8914 -9.4503 -5.0999 20 8 -2.9161 -8.6338 -4.5109 21 6 -2.3662 -7.8533 -3.4432 22 6 1.1761 -4.8060 -0.2856 23 6 1.8255 -3.6498 0.0826 24 1 -0.4851 0.8400 0.0004 25 1 -0.1513 -1.4129 -1.5699 26 1 -1.2775 -3.4986 -2.2137 27 1 -1.6915 -5.8226 -1.6748 28 1 -0.5172 -6.7656 -0.7263 29 1 0.2760 -9.4156 -4.7722 30 1 -0.3836 -7.9089 -5.4957 31 1 -1.8921 -10.4424 -4.6484 32 1 -2.0389 -9.5240 -6.1774 33 1 -2.5150 -6.7927 -3.6459 34 1 -2.8485 -8.1212 -2.5031 35 1 1.5350 -5.7609 0.0690 36 1 2.6925 -3.6961 0.7248 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362596511.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:52 Heat of formation + Delta-G solvation = -94.687987 kcal Electronic energy + Delta-G solvation = -19040.348253 eV Core-core repulsion = 16000.513568 eV Total energy + Delta-G solvation = -3039.834685 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.20375 -39.47009 -36.76736 -35.84034 -33.21800 -33.02216 -31.19730 -30.47410 -29.17220 -25.76921 -23.72583 -22.95378 -22.83077 -21.79770 -19.23505 -18.72220 -17.73814 -17.42714 -17.19956 -16.23448 -16.05356 -15.83486 -15.67792 -15.60338 -14.99917 -14.56211 -14.31687 -14.04823 -13.83417 -13.51146 -13.46103 -13.10689 -12.84942 -12.70143 -12.60309 -12.44042 -12.38279 -12.22903 -11.93727 -11.54898 -11.31839 -11.19357 -10.91809 -10.65085 -9.48993 -9.34014 -8.94999 -8.65350 -6.33750 0.40432 1.06849 1.13794 1.36076 1.49907 1.52137 1.79693 2.18369 2.72048 2.83487 2.90486 3.31277 3.73842 3.82945 4.01413 4.07400 4.12479 4.26906 4.32119 4.45734 4.55024 4.70281 4.74381 4.75451 4.83951 4.92257 5.07009 5.08614 5.14525 5.35077 5.42571 5.68371 5.88110 5.94105 6.09590 6.17838 6.36311 6.69025 6.91661 7.02631 8.30355 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.043741 B = 0.003535 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.983185 B = 7918.002518 C = 8062.939889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.029 3.971 3 Si 0.984 3.016 4 H -0.267 1.267 5 H -0.269 1.269 6 H -0.250 1.250 7 C -0.497 4.497 8 H 0.084 0.916 9 C 0.078 3.922 10 C -0.196 4.196 11 C -0.109 4.109 12 C -0.197 4.197 13 C -0.367 4.367 14 S 1.294 4.706 15 O -0.909 6.909 16 C -0.448 4.448 17 H 0.186 0.814 18 C -0.133 4.133 19 C 0.047 3.953 20 O -0.416 6.416 21 C 0.058 3.942 22 C -0.073 4.073 23 C -0.236 4.236 24 H 0.286 0.714 25 H 0.089 0.911 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.162 0.838 29 H 0.138 0.862 30 H 0.054 0.946 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.026 0.974 34 H 0.093 0.907 35 H 0.156 0.844 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.335 -18.666 -2.720 19.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.185 4.185 3 Si 0.804 3.196 4 H -0.192 1.192 5 H -0.194 1.194 6 H -0.174 1.174 7 C -0.527 4.527 8 H 0.102 0.898 9 C 0.075 3.925 10 C -0.216 4.216 11 C -0.129 4.129 12 C -0.199 4.199 13 C -0.504 4.504 14 S 1.497 4.503 15 O -0.905 6.905 16 C -0.564 4.564 17 H 0.203 0.797 18 C -0.171 4.171 19 C -0.030 4.030 20 O -0.336 6.336 21 C -0.020 4.020 22 C -0.092 4.092 23 C -0.255 4.255 24 H 0.096 0.904 25 H 0.108 0.892 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.180 0.820 29 H 0.156 0.844 30 H 0.073 0.927 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.044 0.956 34 H 0.111 0.889 35 H 0.174 0.826 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.631 -18.158 -3.348 18.650 hybrid contribution -2.319 2.042 -0.367 3.112 sum 0.312 -16.116 -3.715 16.541 Atomic orbital electron populations 1.69911 1.09306 1.30452 1.35909 1.26863 0.95447 1.04935 0.91241 0.85176 0.79332 0.75724 0.79333 1.19189 1.19398 1.17366 1.19932 0.98631 0.92433 1.41671 0.89833 1.18029 0.91423 0.94016 0.89034 1.21210 1.00991 0.96472 1.02906 1.20738 0.98525 0.94161 0.99446 1.18739 1.01475 0.91748 1.07973 1.26291 1.05173 1.02694 1.16195 1.69696 1.09128 0.86974 0.84543 1.93024 1.83034 1.61373 1.53032 1.29517 1.02623 1.18479 1.05828 0.79709 1.23101 1.00526 1.00820 0.92641 1.23679 0.85330 0.94787 0.99156 1.88321 1.36395 1.58599 1.50295 1.23249 0.93137 0.93888 0.91685 1.20945 0.93952 0.98456 0.95876 1.21320 1.04492 0.92736 1.06962 0.90351 0.89248 0.90917 0.91366 0.82017 0.84389 0.92743 0.88994 0.89282 0.95606 0.88886 0.82627 0.86942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.61 10.95 21.83 0.24 -45.37 16 2 C 0.03 1.54 5.14 85.25 0.44 1.97 16 3 Si 0.98 39.28 29.60 68.60 2.03 41.31 16 4 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 5 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 6 H -0.25 -9.44 7.11 99.48 0.71 -8.73 16 7 C -0.50 -27.15 9.05 23.46 0.21 -26.93 16 8 H 0.08 4.30 7.91 -2.91 -0.02 4.27 16 9 C 0.08 4.25 5.58 -21.29 -0.12 4.14 16 10 C -0.20 -11.11 8.70 22.73 0.20 -10.91 16 11 C -0.11 -5.55 9.67 22.22 0.21 -5.34 16 12 C -0.20 -7.98 5.16 -19.67 -0.10 -8.08 16 13 C -0.37 -10.37 5.71 71.24 0.41 -9.96 16 14 S 1.29 32.28 12.60 -56.49 -0.71 31.57 16 15 O -0.91 -37.58 17.62 -148.98 -2.63 -40.21 16 16 C -0.45 -7.79 3.58 31.86 0.11 -7.68 16 17 H 0.19 1.36 8.14 -2.39 -0.02 1.34 16 18 C -0.13 -2.23 6.62 32.05 0.21 -2.02 16 19 C 0.05 0.84 7.78 72.65 0.56 1.41 16 20 O -0.42 -11.30 11.36 -148.98 -1.69 -12.99 16 21 C 0.06 1.43 6.72 72.45 0.49 1.92 16 22 C -0.07 -2.79 9.67 22.22 0.21 -2.57 16 23 C -0.24 -10.86 9.80 22.73 0.22 -10.63 16 24 H 0.29 14.30 8.30 -92.71 -0.77 13.53 16 25 H 0.09 5.43 6.15 -2.91 -0.02 5.41 16 26 H 0.07 3.72 8.06 -2.91 -0.02 3.70 16 27 H 0.07 2.12 7.58 -2.39 -0.02 2.10 16 28 H 0.16 2.87 8.08 -2.39 -0.02 2.85 16 29 H 0.14 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.05 1.26 7.70 -2.38 -0.02 1.24 16 31 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.03 0.83 7.49 -2.39 -0.02 0.81 16 34 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.16 4.02 8.06 -2.91 -0.02 4.00 16 36 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 Total: -1.00 -80.45 314.71 1.38 -79.07 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: 1.07 Total: 21.32 kcal Atomic # 6 Polarization: -77.76 SS G_CDS: 3.07 Total: -74.70 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: 0.24 Total: -45.37 kcal Atomic # 8 Polarization: -48.88 SS G_CDS: -4.32 Total: -53.20 kcal Atomic # 14 Polarization: 39.28 SS G_CDS: 2.03 Total: 41.31 kcal Atomic # 16 Polarization: 32.28 SS G_CDS: -0.71 Total: 31.57 kcal Total: -80.45 1.38 -79.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362596511.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.614 kcal (2) G-P(sol) polarization free energy of solvation -80.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds