Wall clock time and date at job start Tue Mar 31 2020 01:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30817 * 1 3 3 Si 1.86799 * 119.99750 * 2 1 4 4 H 1.48508 * 109.47295 * 240.00407 * 3 2 1 5 5 H 1.48504 * 109.47283 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47194 * 120.00356 * 3 2 1 7 7 C 1.39946 * 120.00336 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00402 * 197.85483 * 7 2 1 9 9 C 1.41400 * 119.99925 * 17.86398 * 7 2 1 10 10 C 1.40715 * 120.24273 * 24.38900 * 9 7 2 11 11 C 1.37623 * 119.74138 * 179.97438 * 10 9 7 12 12 C 1.38633 * 120.25050 * 0.02562 * 11 10 9 13 13 C 1.50694 * 119.75280 * 180.02562 * 12 11 10 14 14 S 1.81399 * 109.47367 * 89.99540 * 13 12 11 15 15 O 1.42102 * 109.47167 * 296.39482 * 14 13 12 16 16 C 1.81397 * 103.00225 * 180.02562 * 14 13 12 17 17 H 1.08997 * 110.43390 * 66.09334 * 16 14 13 18 18 C 1.54810 * 110.60272 * 188.71283 * 16 14 13 19 19 C 1.54998 * 102.08898 * 139.61245 * 18 16 14 20 20 O 1.44573 * 103.58741 * 323.05794 * 19 18 16 21 21 C 1.43743 * 106.87152 * 39.88007 * 20 19 18 22 22 C 1.38640 * 120.49739 * 0.26811 * 12 11 10 23 23 C 1.37618 * 120.25007 * 359.45657 * 22 12 11 24 24 H 0.97001 * 120.00553 * 359.97438 * 1 2 3 25 25 H 1.07998 * 120.13107 * 359.96534 * 10 9 7 26 26 H 1.07999 * 119.87501 * 180.02562 * 11 10 9 27 27 H 1.09008 * 109.46965 * 329.99854 * 13 12 11 28 28 H 1.08995 * 109.47166 * 210.00316 * 13 12 11 29 29 H 1.08997 * 110.91133 * 257.81208 * 18 16 14 30 30 H 1.09004 * 110.90478 * 21.38109 * 18 16 14 31 31 H 1.09002 * 110.61794 * 81.48206 * 19 18 16 32 32 H 1.09006 * 110.61576 * 204.47285 * 19 18 16 33 33 H 1.09000 * 109.87693 * 214.17140 * 21 20 19 34 34 H 1.09007 * 109.87819 * 93.16556 * 21 20 19 35 35 H 1.08004 * 119.87098 * 179.70513 * 22 12 11 36 36 H 1.07998 * 120.12625 * 180.27155 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.0958 1.6966 -1.2126 5 1 1.2771 2.7465 0.0006 6 1 3.0959 1.6964 1.2124 7 6 2.0080 -1.2119 -0.0005 8 1 3.0489 -1.2346 0.2862 9 6 1.3522 -2.4068 -0.3767 10 6 0.2211 -2.3616 -1.2126 11 6 -0.4090 -3.5309 -1.5727 12 6 0.0665 -4.7500 -1.1148 13 6 -0.6317 -6.0236 -1.5166 14 16 0.0998 -6.6560 -3.0514 15 8 -0.1235 -5.7248 -4.1013 16 6 -0.8567 -8.1643 -3.3682 17 1 -1.8950 -7.9171 -3.5894 18 6 -0.2320 -8.9711 -4.5324 19 6 -0.3659 -10.4296 -4.0252 20 8 -0.1210 -10.3190 -2.6047 21 6 -0.7750 -9.1184 -2.1608 22 6 1.1764 -4.8060 -0.2860 23 6 1.8256 -3.6498 0.0824 24 1 -0.4851 0.8400 0.0004 25 1 -0.1513 -1.4129 -1.5700 26 1 -1.2770 -3.4987 -2.2145 27 1 -1.6913 -5.8227 -1.6750 28 1 -0.5168 -6.7657 -0.7266 29 1 -0.7968 -8.8261 -5.4533 30 1 0.8149 -8.7024 -4.6740 31 1 -1.3703 -10.8100 -4.2111 32 1 0.3810 -11.0695 -4.4953 33 1 -0.1969 -8.6554 -1.3611 34 1 -1.7783 -9.3527 -1.8050 35 1 1.5353 -5.7609 0.0687 36 1 2.6926 -3.6961 0.7246 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362596512.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:54 Heat of formation + Delta-G solvation = -71.444636 kcal Electronic energy + Delta-G solvation = -18989.638245 eV Core-core repulsion = 15950.811467 eV Total energy + Delta-G solvation = -3038.826778 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.24504 -37.66265 -35.34577 -34.03696 -32.25629 -31.34397 -29.46958 -29.31052 -27.52125 -24.05328 -23.04531 -21.76007 -21.06240 -20.07449 -17.35863 -17.33319 -16.84411 -16.37264 -15.38218 -15.28497 -14.90821 -14.53552 -14.16391 -13.91820 -13.59707 -13.34469 -12.94220 -12.57626 -12.23585 -11.99898 -11.88150 -11.68551 -11.64789 -11.43444 -11.24317 -11.10398 -11.00758 -10.68198 -10.59244 -9.96899 -9.79275 -9.62478 -9.43791 -9.14000 -8.08679 -7.50934 -7.25827 -6.82090 -4.39939 1.63070 2.70727 2.92699 3.02006 3.04507 3.06894 3.24364 3.71160 3.88731 4.01974 4.34052 4.57129 4.76807 4.83559 5.01360 5.06757 5.42242 5.47088 5.51021 5.52685 5.58125 5.66615 5.68322 5.79586 6.21098 6.29409 6.35267 6.61900 6.90852 7.00676 7.20413 7.28516 7.54692 7.76733 7.99329 8.02399 8.22293 8.57626 8.82434 8.90549 10.11551 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.047314 B = 0.003506 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.650646 B = 7984.357787 C = 8158.710830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.458 4.458 8 H 0.080 0.920 9 C 0.114 3.886 10 C -0.164 4.164 11 C -0.085 4.085 12 C -0.210 4.210 13 C -0.358 4.358 14 S 1.237 4.763 15 O -0.839 6.839 16 C -0.468 4.468 17 H 0.094 0.906 18 C -0.121 4.121 19 C 0.051 3.949 20 O -0.373 6.373 21 C 0.080 3.920 22 C -0.080 4.080 23 C -0.226 4.226 24 H 0.282 0.718 25 H 0.118 0.882 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.109 0.891 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.058 0.942 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.060 0.940 35 H 0.096 0.904 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.076 -14.829 -3.890 15.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.487 4.487 8 H 0.098 0.902 9 C 0.111 3.889 10 C -0.184 4.184 11 C -0.105 4.105 12 C -0.214 4.214 13 C -0.496 4.496 14 S 1.438 4.562 15 O -0.834 6.834 16 C -0.583 4.583 17 H 0.113 0.887 18 C -0.160 4.160 19 C -0.026 4.026 20 O -0.292 6.292 21 C 0.003 3.997 22 C -0.100 4.100 23 C -0.246 4.246 24 H 0.093 0.907 25 H 0.136 0.864 26 H 0.102 0.898 27 H 0.095 0.905 28 H 0.127 0.873 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.076 0.924 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.078 0.922 35 H 0.114 0.886 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.668 -14.495 -4.354 15.150 hybrid contribution -2.331 1.489 -0.337 2.787 sum -1.664 -13.006 -4.691 13.926 Atomic orbital electron populations 1.69814 1.07706 1.29539 1.34300 1.25961 0.94741 1.01517 0.92155 0.86339 0.80156 0.80015 0.80079 1.18691 1.20319 1.18890 1.19631 0.98225 0.91281 1.39591 0.90170 1.17666 0.90905 0.92206 0.88155 1.21302 0.99377 0.96690 1.00989 1.20549 0.98383 0.92825 0.98716 1.18235 1.02033 0.90924 1.10193 1.26185 1.06256 1.03899 1.13249 1.70877 1.10626 0.87306 0.87406 1.93102 1.81595 1.58370 1.50337 1.29215 1.11412 1.16448 1.01196 0.88695 1.22752 1.01833 0.94459 0.96936 1.23570 1.01085 0.96287 0.81686 1.88895 1.75090 1.42573 1.22663 1.22788 0.98073 0.84058 0.94813 1.20395 0.95197 0.96934 0.97450 1.20960 1.03830 0.92743 1.07026 0.90667 0.86387 0.89818 0.90514 0.87292 0.90098 0.89722 0.92358 0.88595 0.88680 0.92166 0.88602 0.88558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.43 10.95 55.55 0.61 -19.82 16 2 C 0.07 1.87 5.14 -17.34 -0.09 1.78 16 3 Si 0.91 18.52 29.59 -169.99 -5.03 13.49 16 4 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 5 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 6 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 7 C -0.46 -12.01 9.05 -37.74 -0.34 -12.35 16 8 H 0.08 1.99 7.91 -52.49 -0.42 1.58 16 9 C 0.11 3.01 5.58 -106.82 -0.60 2.42 16 10 C -0.16 -4.37 8.70 -38.87 -0.34 -4.71 16 11 C -0.09 -2.09 9.67 -39.66 -0.38 -2.47 16 12 C -0.21 -4.47 5.16 -104.33 -0.54 -5.01 16 13 C -0.36 -5.78 5.66 36.00 0.20 -5.58 16 14 S 1.24 18.04 12.36 -107.50 -1.33 16.71 16 15 O -0.84 -17.71 18.14 -35.23 -0.64 -18.35 16 16 C -0.47 -5.37 3.62 -25.20 -0.09 -5.46 16 17 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 18 C -0.12 -1.21 6.73 -24.72 -0.17 -1.37 16 19 C 0.05 0.45 7.72 38.21 0.29 0.75 16 20 O -0.37 -4.13 11.54 -35.23 -0.41 -4.53 16 21 C 0.08 0.81 7.08 37.73 0.27 1.08 16 22 C -0.08 -1.67 9.67 -39.66 -0.38 -2.05 16 23 C -0.23 -5.33 9.80 -38.87 -0.38 -5.71 16 24 H 0.28 6.66 8.30 -40.82 -0.34 6.33 16 25 H 0.12 3.27 6.15 -52.49 -0.32 2.94 16 26 H 0.08 2.00 8.06 -52.49 -0.42 1.58 16 27 H 0.08 1.27 8.08 -51.92 -0.42 0.85 16 28 H 0.11 1.37 6.85 -51.93 -0.36 1.01 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.08 0.77 7.84 -51.93 -0.41 0.36 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.10 0.82 6.32 -51.93 -0.33 0.49 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.10 1.59 8.06 -52.48 -0.42 1.16 16 36 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 313.79 15.07 4.73 4.73 Total: -1.00 -32.54 313.79 -9.38 -41.92 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -4.76 Total: 4.55 kcal Atomic # 6 Polarization: -36.15 SS G_CDS: -2.54 Total: -38.69 kcal Atomic # 7 Polarization: -20.43 SS G_CDS: 0.61 Total: -19.82 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -1.05 Total: -22.88 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.49 kcal Atomic # 16 Polarization: 18.04 SS G_CDS: -1.33 Total: 16.71 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.54 -9.38 -41.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362596512.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.529 kcal (2) G-P(sol) polarization free energy of solvation -32.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds