Wall clock time and date at job start Tue Mar 31 2020 01:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46875 * 2 1 4 4 C 1.52998 * 109.46858 * 120.00154 * 2 1 3 5 5 S 1.81403 * 109.47393 * 294.99647 * 4 2 1 6 6 C 1.81401 * 102.99809 * 180.02562 * 5 4 2 7 7 C 1.50704 * 109.46796 * 180.02562 * 6 5 4 8 8 C 1.38639 * 119.74939 * 90.00095 * 7 6 5 9 9 C 1.37620 * 120.24897 * 180.27710 * 8 7 6 10 10 C 1.40715 * 119.74131 * 359.51904 * 9 8 7 11 11 C 1.41399 * 120.24183 * 180.22985 * 10 9 8 12 12 H 1.07996 * 120.00044 * 204.52621 * 11 10 9 13 13 C 1.39950 * 119.99773 * 24.53568 * 11 10 9 14 14 N 1.30821 * 119.99991 * 17.71280 * 13 11 10 15 15 Si 1.86800 * 119.99756 * 197.70913 * 13 11 10 16 16 H 1.48506 * 109.46742 * 59.99979 * 15 13 11 17 17 H 1.48505 * 109.46999 * 179.97438 * 15 13 11 18 18 H 1.48491 * 109.47336 * 300.00007 * 15 13 11 19 19 C 1.40715 * 119.51261 * 0.47567 * 10 9 8 20 20 C 1.37609 * 119.74608 * 359.75586 * 19 10 9 21 21 C 1.50691 * 109.47005 * 240.00389 * 2 1 3 22 22 O 1.20823 * 119.99980 * 240.00114 * 21 2 1 23 23 O 1.34233 * 120.00540 * 59.99995 * 21 2 1 24 24 H 1.08997 * 109.47227 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47231 * 300.00041 * 1 2 3 26 26 H 1.09002 * 109.47097 * 59.99623 * 1 2 3 27 27 H 1.09007 * 109.46801 * 174.99717 * 4 2 1 28 28 H 1.08998 * 109.47002 * 55.00250 * 4 2 1 29 29 H 1.08993 * 109.47418 * 60.00325 * 6 5 4 30 30 H 1.09002 * 109.46995 * 299.99599 * 6 5 4 31 31 H 1.08000 * 119.87572 * 359.97438 * 8 7 6 32 32 H 1.07993 * 120.12561 * 179.72165 * 9 8 7 33 33 H 0.97005 * 119.99803 * 180.02562 * 14 13 11 34 34 H 1.08000 * 120.12510 * 179.73128 * 19 10 9 35 35 H 1.08002 * 119.87647 * 179.97438 * 20 19 10 36 36 H 0.96698 * 117.00520 * 180.02562 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 16 1.5601 0.2155 2.7267 6 6 2.2430 -0.7799 4.0806 7 6 1.9224 -0.1228 5.3984 8 6 0.7479 -0.4459 6.0605 9 6 0.4422 0.1522 7.2616 10 6 1.3318 1.0872 7.8223 11 6 1.0305 1.7044 9.0583 12 1 1.4610 2.6646 9.3015 13 6 0.1746 1.0710 9.9665 14 7 -0.0707 -0.2088 9.8506 15 14 -0.6174 2.0529 11.3442 16 1 -1.4492 3.1377 10.7639 17 1 -1.4738 1.1566 12.1619 18 1 0.4406 2.6451 12.2015 19 6 2.5209 1.4073 7.1415 20 6 2.8039 0.8005 5.9393 21 6 2.0323 -0.7103 -1.2304 22 8 2.7269 -1.6927 -1.1197 23 8 1.7081 -0.2517 -2.4496 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 3.1263 -0.7995 1.2055 28 1 1.6053 -1.7198 1.2950 29 1 3.3242 -0.8564 3.9659 30 1 1.8036 -1.7771 4.0559 31 1 0.0681 -1.1660 5.6296 32 1 -0.4754 -0.0976 7.7734 33 1 -0.6642 -0.6478 10.4799 34 1 3.2087 2.1268 7.5607 35 1 3.7157 1.0449 5.4147 36 1 2.0535 -0.7408 -3.2089 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399014384.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:28 Heat of formation + Delta-G solvation = -111.630424 kcal Electronic energy + Delta-G solvation = -18251.448723 eV Core-core repulsion = 15210.879359 eV Total energy + Delta-G solvation = -3040.569364 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.41022 -39.47251 -37.24469 -35.87857 -35.75639 -33.00896 -31.19306 -29.41320 -28.34531 -25.86608 -25.50153 -22.90654 -22.01679 -21.32037 -19.23232 -19.17121 -17.98379 -17.27526 -16.90927 -16.84207 -16.02601 -15.78642 -15.63009 -15.33811 -15.02610 -14.46414 -14.15193 -13.96162 -13.81286 -13.64468 -13.41688 -13.21320 -12.77419 -12.67361 -12.62351 -12.46330 -12.43138 -12.29510 -12.05782 -11.53758 -11.51519 -11.28402 -11.04627 -10.81756 -9.37643 -9.18818 -8.65937 -8.55517 -6.33968 0.36578 1.10836 1.12940 1.17023 1.38854 1.49616 1.52926 1.82262 2.20191 2.20874 2.75925 3.46276 3.72967 3.75377 4.09751 4.14099 4.16461 4.37534 4.49654 4.52805 4.59491 4.62301 4.71242 4.87427 4.93530 5.04382 5.14338 5.28533 5.34787 5.43739 5.55727 5.69082 5.93371 6.08958 6.18918 6.36424 6.68109 6.92097 6.94561 7.01291 8.30619 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.046775 B = 0.002863 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.466111 B = 9778.102597 C = 9923.843795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.063 4.063 3 H 0.128 0.872 4 C -0.074 4.074 5 S -0.274 6.274 6 C -0.004 4.004 7 C -0.201 4.201 8 C -0.084 4.084 9 C -0.191 4.191 10 C 0.084 3.916 11 C -0.497 4.497 12 H 0.077 0.923 13 C 0.035 3.965 14 N -0.821 5.821 15 Si 0.983 3.017 16 H -0.261 1.261 17 H -0.267 1.267 18 H -0.259 1.259 19 C -0.244 4.244 20 C -0.070 4.070 21 C 0.498 3.502 22 O -0.549 6.549 23 O -0.505 6.505 24 H 0.061 0.939 25 H 0.076 0.924 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.289 0.711 34 H 0.099 0.901 35 H 0.116 0.884 36 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.372 -0.541 -17.507 17.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.083 4.083 3 H 0.146 0.854 4 C -0.223 4.223 5 S -0.043 6.043 6 C -0.151 4.151 7 C -0.204 4.204 8 C -0.104 4.104 9 C -0.211 4.211 10 C 0.081 3.919 11 C -0.526 4.526 12 H 0.095 0.905 13 C -0.180 4.180 14 N -0.447 5.447 15 Si 0.803 3.197 16 H -0.185 1.185 17 H -0.191 1.191 18 H -0.183 1.183 19 C -0.264 4.264 20 C -0.090 4.090 21 C 0.340 3.660 22 O -0.440 6.440 23 O -0.319 6.319 24 H 0.081 0.919 25 H 0.094 0.906 26 H 0.105 0.895 27 H 0.104 0.896 28 H 0.103 0.897 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.124 0.876 32 H 0.119 0.881 33 H 0.100 0.900 34 H 0.117 0.883 35 H 0.134 0.866 36 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -0.272 0.124 -17.050 17.053 hybrid contribution 0.714 -1.305 0.344 1.527 sum 0.442 -1.181 -16.707 16.754 Atomic orbital electron populations 1.21820 0.90251 1.03447 1.04422 1.20701 0.99609 1.01094 0.86922 0.85444 1.23198 1.04210 1.01245 0.93602 1.87181 1.76577 1.39780 1.00783 1.21943 1.02484 0.98845 0.91818 1.18736 0.98682 1.05872 0.97065 1.20748 0.96125 0.98715 0.94775 1.21259 1.00536 1.02924 0.96356 1.18009 0.90392 0.90897 0.92578 1.19873 1.26076 1.05594 1.01072 0.90501 1.26787 0.94631 0.95379 1.01231 1.69867 1.28644 1.10766 1.35376 0.85246 0.78755 0.78813 0.76890 1.18509 1.19104 1.18284 1.21157 0.98468 1.07424 0.99358 1.20670 0.98188 0.95357 0.94772 1.23351 0.75740 0.81508 0.85423 1.90727 1.37629 1.27784 1.87858 1.84485 1.71832 1.58889 1.16669 0.91945 0.90554 0.89547 0.89647 0.89718 0.89535 0.89918 0.87615 0.88052 0.89990 0.88329 0.86557 0.70859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 8.95 71.98 0.64 -1.75 16 2 C -0.06 -1.17 2.83 -11.54 -0.03 -1.21 16 3 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 4 C -0.07 -1.71 4.73 71.98 0.34 -1.37 16 5 S -0.27 -8.13 20.53 -56.49 -1.16 -9.29 16 6 C 0.00 -0.13 6.06 71.24 0.43 0.30 16 7 C -0.20 -8.38 5.16 -19.67 -0.10 -8.48 16 8 C -0.08 -3.86 9.67 22.22 0.21 -3.65 16 9 C -0.19 -10.09 8.70 22.73 0.20 -9.90 16 10 C 0.08 4.58 5.57 -21.29 -0.12 4.46 16 11 C -0.50 -26.87 9.06 23.46 0.21 -26.65 16 12 H 0.08 4.00 7.91 -2.91 -0.02 3.98 16 13 C 0.04 1.77 5.14 85.26 0.44 2.21 16 14 N -0.82 -42.82 10.95 21.83 0.24 -42.58 16 15 Si 0.98 37.96 29.59 68.60 2.03 39.99 16 16 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 17 H -0.27 -9.71 7.11 99.48 0.71 -9.00 16 18 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 19 C -0.24 -12.04 9.80 22.73 0.22 -11.82 16 20 C -0.07 -3.04 9.67 22.22 0.21 -2.83 16 21 C 0.50 9.26 7.63 71.23 0.54 9.80 16 22 O -0.55 -13.85 16.68 21.97 0.37 -13.48 16 23 O -0.51 -6.23 13.33 -51.44 -0.69 -6.92 16 24 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.08 1.50 7.14 -2.38 -0.02 1.49 16 26 H 0.09 1.17 8.11 -2.39 -0.02 1.15 16 27 H 0.08 2.00 7.96 -2.39 -0.02 1.99 16 28 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.09 2.58 8.08 -2.39 -0.02 2.56 16 30 H 0.08 2.54 8.08 -2.39 -0.02 2.52 16 31 H 0.11 4.40 8.06 -2.91 -0.02 4.37 16 32 H 0.10 5.60 6.16 -2.91 -0.02 5.58 16 33 H 0.29 13.62 8.30 -92.70 -0.77 12.86 16 34 H 0.10 4.60 8.06 -2.91 -0.02 4.57 16 35 H 0.12 4.35 8.06 -2.91 -0.02 4.32 16 36 H 0.43 1.65 9.10 -74.06 -0.67 0.97 16 Total: -1.00 -63.26 324.79 4.41 -58.85 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: 0.41 Total: 24.32 kcal Atomic # 6 Polarization: -54.10 SS G_CDS: 3.21 Total: -50.89 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: 0.24 Total: -42.58 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.32 Total: -20.40 kcal Atomic # 14 Polarization: 37.96 SS G_CDS: 2.03 Total: 39.99 kcal Atomic # 16 Polarization: -8.13 SS G_CDS: -1.16 Total: -9.29 kcal Total: -63.26 4.41 -58.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399014384.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.780 kcal (2) G-P(sol) polarization free energy of solvation -63.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds