Wall clock time and date at job start Tue Mar 31 2020 01:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46584 * 2 1 4 4 C 1.52997 * 109.47069 * 240.00201 * 2 1 3 5 5 C 1.50701 * 109.47139 * 175.00078 * 4 2 1 6 6 O 1.20826 * 119.99650 * 359.97438 * 5 4 2 7 7 O 1.34221 * 120.00017 * 179.97438 * 5 4 2 8 8 S 1.81395 * 109.47043 * 119.99985 * 2 1 3 9 9 C 1.81402 * 103.00299 * 295.00151 * 8 2 1 10 10 C 1.50700 * 109.47251 * 180.02562 * 9 8 2 11 11 C 1.38637 * 119.74821 * 269.72864 * 10 9 8 12 12 C 1.37620 * 120.24723 * 179.72582 * 11 10 9 13 13 C 1.40718 * 119.74143 * 0.56154 * 12 11 10 14 14 C 1.41399 * 120.23890 * 179.68691 * 13 12 11 15 15 H 1.08001 * 119.99611 * 155.31608 * 14 13 12 16 16 C 1.39945 * 120.00322 * 335.31072 * 14 13 12 17 17 N 1.30826 * 119.99740 * 342.23486 * 16 14 13 18 18 Si 1.86800 * 120.00102 * 162.23439 * 16 14 13 19 19 H 1.48495 * 109.46866 * 94.66685 * 18 16 14 20 20 H 1.48502 * 109.46795 * 214.66753 * 18 16 14 21 21 H 1.48502 * 109.46708 * 334.66784 * 18 16 14 22 22 C 1.40715 * 119.51402 * 359.71090 * 13 12 11 23 23 C 1.37612 * 119.74571 * 359.97438 * 22 13 12 24 24 H 1.09003 * 109.47456 * 59.99973 * 1 2 3 25 25 H 1.09008 * 109.47375 * 299.99686 * 1 2 3 26 26 H 1.09000 * 109.47253 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46977 * 295.00234 * 4 2 1 28 28 H 1.09005 * 109.47174 * 54.99723 * 4 2 1 29 29 H 0.96705 * 117.00479 * 179.97438 * 7 5 4 30 30 H 1.09003 * 109.47076 * 300.00243 * 9 8 2 31 31 H 1.08999 * 109.46968 * 59.99948 * 9 8 2 32 32 H 1.07998 * 119.87590 * 359.97263 * 11 10 9 33 33 H 1.07992 * 120.12682 * 180.27801 * 12 11 10 34 34 H 0.96997 * 119.99925 * 179.97438 * 17 16 14 35 35 H 1.07994 * 120.12657 * 179.97438 * 22 13 12 36 36 H 1.08003 * 119.88050 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6149 -1.3127 6 8 4.1427 -0.0226 -0.4477 7 8 4.2122 -1.1781 -2.3301 8 16 2.1347 -0.8551 1.4811 9 6 1.5664 0.2153 2.8309 10 6 1.9984 -0.3690 4.1512 11 6 1.1649 -1.2540 4.8175 12 6 1.5515 -1.7980 6.0210 13 6 2.7930 -1.4436 6.5806 14 6 3.1979 -1.9911 7.8198 15 1 4.2480 -2.0587 8.0630 16 6 2.2380 -2.4453 8.7312 17 7 0.9923 -2.0630 8.6142 18 14 2.7352 -3.5975 10.1149 19 1 3.0192 -2.8069 11.3394 20 1 1.6296 -4.5510 10.3865 21 1 3.9522 -4.3506 9.7186 22 6 3.6284 -0.5400 5.8982 23 6 3.2241 -0.0134 4.6928 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 1.7516 -1.7714 -1.2056 28 1 1.6053 -0.2617 -2.1370 29 1 5.1746 -1.0831 -2.3280 30 1 2.0001 1.2085 2.7142 31 1 0.4792 0.2881 2.8037 32 1 0.2103 -1.5206 4.3885 33 1 0.9026 -2.4907 6.5362 34 1 0.3269 -2.3780 9.2456 35 1 4.5830 -0.2608 6.3188 36 1 3.8637 0.6801 4.1669 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399119521.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:26 Heat of formation + Delta-G solvation = -108.699448 kcal Electronic energy + Delta-G solvation = -18592.260343 eV Core-core repulsion = 15551.818075 eV Total energy + Delta-G solvation = -3040.442268 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.14237 -39.49331 -37.14648 -35.86121 -35.58816 -33.03292 -31.21938 -29.78371 -29.00045 -25.73539 -24.00266 -22.93184 -22.15704 -21.48396 -19.25459 -18.93519 -17.73534 -17.59417 -17.21318 -16.68920 -16.05337 -15.73213 -15.67266 -15.50777 -14.76942 -14.30216 -14.16138 -13.86813 -13.65925 -13.43770 -13.35996 -13.19812 -12.90828 -12.76042 -12.56233 -12.41634 -12.33700 -12.28089 -11.93118 -11.54317 -11.51701 -11.31311 -11.01196 -10.60612 -9.40299 -9.19851 -8.67127 -8.40831 -6.35539 0.47317 1.10478 1.19836 1.33783 1.37927 1.50614 1.55611 1.86581 2.19961 2.20508 2.74404 3.56865 3.72945 3.97585 4.12821 4.15818 4.22855 4.50472 4.50941 4.55541 4.56370 4.63501 4.68718 4.86484 4.99011 5.02056 5.12864 5.30154 5.32239 5.41816 5.66774 5.71504 5.91346 6.06508 6.16793 6.34330 6.65707 6.90324 6.99009 7.07641 8.29987 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.032423 B = 0.003425 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.384308 B = 8172.387636 C = 8545.388718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.046 4.046 3 H 0.085 0.915 4 C -0.090 4.090 5 C 0.468 3.532 6 O -0.533 6.533 7 O -0.517 6.517 8 S -0.307 6.307 9 C 0.006 3.994 10 C -0.200 4.200 11 C -0.083 4.083 12 C -0.189 4.189 13 C 0.085 3.915 14 C -0.499 4.499 15 H 0.075 0.925 16 C 0.036 3.964 17 N -0.820 5.820 18 Si 0.983 3.017 19 H -0.261 1.261 20 H -0.263 1.263 21 H -0.260 1.260 22 C -0.246 4.246 23 C -0.074 4.074 24 H 0.094 0.906 25 H 0.054 0.946 26 H 0.072 0.928 27 H 0.122 0.878 28 H 0.156 0.844 29 H 0.424 0.576 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.290 0.710 35 H 0.096 0.904 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.350 1.973 -18.194 18.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.175 4.175 3 H 0.103 0.897 4 C -0.128 4.128 5 C 0.311 3.689 6 O -0.422 6.422 7 O -0.331 6.331 8 S -0.077 6.077 9 C -0.141 4.141 10 C -0.202 4.202 11 C -0.103 4.103 12 C -0.209 4.209 13 C 0.082 3.918 14 C -0.528 4.528 15 H 0.093 0.907 16 C -0.179 4.179 17 N -0.446 5.446 18 Si 0.804 3.196 19 H -0.186 1.186 20 H -0.187 1.187 21 H -0.184 1.184 22 C -0.266 4.266 23 C -0.094 4.094 24 H 0.113 0.887 25 H 0.073 0.927 26 H 0.091 0.909 27 H 0.140 0.860 28 H 0.174 0.826 29 H 0.285 0.715 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.127 0.873 33 H 0.122 0.878 34 H 0.101 0.899 35 H 0.114 0.886 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.273 1.162 -17.862 18.043 hybrid contribution 0.405 0.824 0.980 1.343 sum -1.868 1.986 -16.881 17.100 Atomic orbital electron populations 1.22048 0.90551 1.03886 1.03505 1.23027 0.99990 1.01459 0.93021 0.89677 1.21287 0.86647 1.05429 0.99410 1.23803 0.92661 0.74542 0.77920 1.90818 1.71112 1.41163 1.39076 1.84469 1.28500 1.72456 1.47650 1.87373 1.77748 1.40090 1.02506 1.21845 1.02390 0.98152 0.91694 1.18791 0.97272 1.07073 0.97113 1.20742 0.98244 0.96581 0.94708 1.21260 0.99131 1.04217 0.96298 1.17990 0.92066 0.89107 0.92630 1.19880 0.94766 1.37318 1.00844 0.90690 1.26783 0.94110 0.95755 1.01272 1.69868 1.03847 1.35575 1.35302 0.85180 0.79347 0.78078 0.77035 1.18564 1.18739 1.18420 1.21143 1.01877 1.04287 0.99251 1.20643 0.95311 0.98611 0.94832 0.88708 0.92706 0.90920 0.86011 0.82626 0.71478 0.90599 0.89390 0.87280 0.87849 0.89927 0.88578 0.87469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.10 71.98 0.66 -1.61 16 2 C -0.05 -0.99 2.44 30.59 0.07 -0.92 16 3 H 0.08 1.95 7.96 -2.39 -0.02 1.93 16 4 C -0.09 -1.44 5.28 29.85 0.16 -1.29 16 5 C 0.47 10.24 8.04 71.24 0.57 10.81 16 6 O -0.53 -16.55 15.55 21.96 0.34 -16.21 16 7 O -0.52 -8.33 13.42 -51.33 -0.69 -9.02 16 8 S -0.31 -10.25 19.59 -56.49 -1.11 -11.36 16 9 C 0.01 0.21 5.75 71.24 0.41 0.62 16 10 C -0.20 -8.91 5.16 -19.67 -0.10 -9.01 16 11 C -0.08 -3.96 9.67 22.22 0.21 -3.74 16 12 C -0.19 -10.29 8.70 22.73 0.20 -10.09 16 13 C 0.08 4.79 5.57 -21.29 -0.12 4.67 16 14 C -0.50 -27.78 9.05 23.46 0.21 -27.56 16 15 H 0.07 4.04 7.91 -2.91 -0.02 4.02 16 16 C 0.04 1.86 5.14 85.26 0.44 2.30 16 17 N -0.82 -43.31 10.97 21.83 0.24 -43.07 16 18 Si 0.98 38.67 29.60 68.60 2.03 40.70 16 19 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 20 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 21 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 22 C -0.25 -12.86 9.80 22.73 0.22 -12.63 16 23 C -0.07 -3.51 9.67 22.22 0.21 -3.29 16 24 H 0.09 0.93 8.14 -2.39 -0.02 0.92 16 25 H 0.05 1.00 6.92 -2.38 -0.02 0.99 16 26 H 0.07 1.16 8.14 -2.39 -0.02 1.15 16 27 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.16 1.24 8.14 -2.38 -0.02 1.22 16 29 H 0.42 3.89 9.10 -74.05 -0.67 3.22 16 30 H 0.08 2.55 8.08 -2.39 -0.02 2.53 16 31 H 0.09 2.76 7.08 -2.39 -0.02 2.74 16 32 H 0.11 4.63 8.06 -2.91 -0.02 4.61 16 33 H 0.10 5.82 6.18 -2.91 -0.02 5.80 16 34 H 0.29 13.71 8.30 -92.71 -0.77 12.95 16 35 H 0.10 4.79 8.06 -2.91 -0.02 4.76 16 36 H 0.11 4.59 8.06 -2.91 -0.02 4.57 16 Total: -1.00 -69.52 322.08 4.38 -65.13 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: 0.42 Total: 25.58 kcal Atomic # 6 Polarization: -54.90 SS G_CDS: 3.15 Total: -51.75 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: 0.24 Total: -43.07 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.35 Total: -25.23 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 2.03 Total: 40.70 kcal Atomic # 16 Polarization: -10.25 SS G_CDS: -1.11 Total: -11.36 kcal Total: -69.52 4.38 -65.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399119521.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.566 kcal (2) G-P(sol) polarization free energy of solvation -69.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds