Wall clock time and date at job start Tue Mar 31 2020 01:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45200 * 109.47665 * 2 1 4 4 C 1.34224 * 117.00203 * 180.02562 * 3 2 1 5 5 O 1.20828 * 120.00087 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00012 * 180.02562 * 4 3 2 7 7 H 1.09002 * 109.46959 * 324.99858 * 6 4 3 8 8 S 1.81401 * 109.47307 * 204.99890 * 6 4 3 9 9 C 1.81396 * 103.00100 * 174.99999 * 8 6 4 10 10 C 1.50701 * 109.47105 * 180.02562 * 9 8 6 11 11 H 1.07998 * 119.99671 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00040 * 180.02562 * 10 9 8 13 13 N 1.31515 * 119.99883 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99968 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47434 * 89.99477 * 14 12 10 16 16 H 1.48502 * 109.47053 * 209.99945 * 14 12 10 17 17 H 1.48505 * 109.46921 * 329.99709 * 14 12 10 18 18 C 1.50703 * 109.47227 * 84.99860 * 6 4 3 19 19 C 1.38237 * 119.99747 * 59.72539 * 18 6 4 20 20 C 1.38240 * 119.99788 * 179.81066 * 19 18 6 21 21 C 1.38236 * 119.99657 * 0.39831 * 20 19 18 22 22 C 1.38230 * 120.00403 * 359.85459 * 21 20 19 23 23 C 1.38232 * 120.00112 * 240.00090 * 18 6 4 24 24 H 1.08996 * 109.47903 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46942 * 300.00008 * 1 2 3 26 26 H 1.08999 * 109.47443 * 59.99369 * 1 2 3 27 27 H 1.09000 * 109.46942 * 239.99992 * 2 1 3 28 28 H 1.09003 * 109.47079 * 120.00294 * 2 1 3 29 29 H 1.09004 * 109.47026 * 300.00121 * 9 8 6 30 30 H 1.08994 * 109.47210 * 59.99878 * 9 8 6 31 31 H 0.96997 * 119.99792 * 180.02562 * 13 12 10 32 32 H 1.08003 * 120.00234 * 0.02562 * 19 18 6 33 33 H 1.07995 * 119.99993 * 180.23158 * 20 19 18 34 34 H 1.08005 * 119.99783 * 179.83592 * 21 20 19 35 35 H 1.08000 * 120.00473 * 179.97438 * 22 21 20 36 36 H 1.08005 * 119.99991 * 359.97438 * 23 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3447 1.5447 -0.0005 5 8 4.0807 0.5864 -0.0015 6 6 3.9208 2.9372 0.0000 7 1 3.2815 3.5951 -0.5888 8 16 5.5839 2.9039 -0.7236 9 6 6.0410 4.6585 -0.7769 10 6 7.4216 4.8004 -1.3642 11 1 7.9693 3.9227 -1.6740 12 6 7.9857 6.0506 -1.5051 13 7 7.3188 7.1193 -1.1274 14 14 9.6967 6.2264 -2.2339 15 1 9.5939 6.3796 -3.7073 16 1 10.3599 7.4233 -1.6568 17 1 10.4966 5.0161 -1.9167 18 6 3.9991 3.4480 1.4157 19 6 4.7531 2.7692 2.3546 20 6 4.8281 3.2398 3.6523 21 6 4.1424 4.3846 4.0129 22 6 3.3841 5.0605 3.0753 23 6 3.3123 4.5920 1.7767 24 1 -0.3635 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 5.3260 5.2016 -1.3950 30 1 6.0318 5.0673 0.2335 31 1 7.7155 7.9988 -1.2269 32 1 5.2865 1.8731 2.0736 33 1 5.4202 2.7116 4.3849 34 1 4.1988 4.7509 5.0274 35 1 2.8480 5.9547 3.3571 36 1 2.7199 5.1201 1.0441 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413009050.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:43 Heat of formation + Delta-G solvation = -70.825008 kcal Electronic energy + Delta-G solvation = -19178.054553 eV Core-core repulsion = 16139.254644 eV Total energy + Delta-G solvation = -3038.799909 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.44745 -38.86226 -36.52515 -33.19845 -33.03872 -31.64956 -30.67531 -28.52101 -27.78918 -23.64557 -23.02804 -22.40696 -21.86344 -20.70172 -17.64703 -17.05426 -16.79680 -16.33270 -15.97837 -15.33773 -15.12484 -14.64831 -14.17319 -14.03518 -13.36671 -13.22554 -12.97608 -12.92462 -12.78400 -12.38692 -12.19637 -12.08005 -11.91341 -11.67821 -11.13567 -10.91410 -10.85319 -10.73085 -10.54596 -10.39390 -10.08949 -9.60315 -8.99510 -8.68149 -8.63098 -8.42113 -6.76279 -6.20006 -4.24442 1.40090 1.65044 2.00429 2.40198 3.00529 3.26450 3.32068 3.37494 3.74204 4.09819 4.35337 4.72322 4.76939 4.82264 4.90404 5.03594 5.15121 5.17421 5.20313 5.34591 5.38072 5.54951 5.63230 5.71202 5.80853 5.83149 6.11593 6.26890 6.45675 6.64539 6.71905 6.77687 7.06147 7.12850 7.19300 7.73819 7.86734 7.98854 8.76934 9.38540 10.91218 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.016945 B = 0.005242 C = 0.004401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.050268 B = 5340.218730 C = 6360.215671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.354 6.354 4 C 0.491 3.509 5 O -0.484 6.484 6 C -0.031 4.031 7 H 0.116 0.884 8 S -0.224 6.224 9 C 0.082 3.918 10 C -0.512 4.512 11 H 0.067 0.933 12 C 0.068 3.932 13 N -0.890 5.890 14 Si 0.906 3.094 15 H -0.277 1.277 16 H -0.284 1.284 17 H -0.270 1.270 18 C -0.077 4.077 19 C -0.090 4.090 20 C -0.121 4.121 21 C -0.117 4.117 22 C -0.121 4.121 23 C -0.097 4.097 24 H 0.078 0.922 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.036 0.964 30 H 0.041 0.959 31 H 0.266 0.734 32 H 0.130 0.870 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.973 -8.087 7.227 16.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.272 6.272 4 C 0.331 3.669 5 O -0.370 6.370 6 C -0.160 4.160 7 H 0.134 0.866 8 S 0.007 5.993 9 C -0.065 4.065 10 C -0.552 4.552 11 H 0.085 0.915 12 C -0.136 4.136 13 N -0.528 5.528 14 Si 0.733 3.267 15 H -0.203 1.203 16 H -0.209 1.209 17 H -0.195 1.195 18 C -0.079 4.079 19 C -0.109 4.109 20 C -0.139 4.139 21 C -0.136 4.136 22 C -0.139 4.139 23 C -0.117 4.117 24 H 0.097 0.903 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.147 0.853 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.165 -9.130 6.853 16.683 hybrid contribution 0.228 1.247 -0.053 1.269 sum -11.937 -7.883 6.800 15.839 Atomic orbital electron populations 1.21796 0.92688 1.02795 1.03565 1.23023 0.95260 0.80385 1.02642 1.86506 1.24209 1.32204 1.84253 1.22671 0.80559 0.91186 0.72444 1.90670 1.60160 1.42198 1.43949 1.21832 1.02130 0.93877 0.98116 0.86571 1.87130 1.11854 1.20384 1.79980 1.21187 1.00102 0.84396 1.00766 1.20607 0.99094 0.93182 1.42331 0.91464 1.24931 0.98320 0.95207 0.95169 1.69956 1.37931 0.98296 1.46655 0.86355 0.83230 0.77880 0.79235 1.20319 1.20948 1.19504 1.19379 0.99216 0.96823 0.92492 1.21108 0.96994 1.00079 0.92706 1.21073 0.99794 0.96969 0.96112 1.21138 0.97364 0.95676 0.99376 1.21042 0.99826 0.99815 0.93192 1.21011 0.98613 0.95446 0.96591 0.90335 0.91491 0.91427 0.91139 0.91285 0.94558 0.94026 0.92488 0.85255 0.86014 0.86233 0.85966 0.85845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 10.29 37.15 0.38 -0.86 16 2 C 0.06 0.70 6.19 37.15 0.23 0.93 16 3 O -0.35 -5.28 10.22 -39.24 -0.40 -5.68 16 4 C 0.49 8.60 6.70 36.01 0.24 8.84 16 5 O -0.48 -9.46 15.89 -18.75 -0.30 -9.76 16 6 C -0.03 -0.57 2.92 -29.03 -0.08 -0.65 16 7 H 0.12 1.97 7.88 -51.92 -0.41 1.56 16 8 S -0.22 -5.05 20.00 -107.50 -2.15 -7.20 16 9 C 0.08 2.14 5.48 36.01 0.20 2.34 16 10 C -0.51 -14.49 9.13 -34.44 -0.31 -14.80 16 11 H 0.07 1.91 7.71 -52.49 -0.40 1.50 16 12 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 13 N -0.89 -25.76 13.29 55.43 0.74 -25.02 16 14 Si 0.91 21.43 29.54 -169.99 -5.02 16.41 16 15 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 17 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 18 C -0.08 -1.34 4.40 -104.62 -0.46 -1.80 16 19 C -0.09 -1.54 8.89 -39.58 -0.35 -1.89 16 20 C -0.12 -1.78 10.05 -39.58 -0.40 -2.18 16 21 C -0.12 -1.59 10.05 -39.58 -0.40 -1.98 16 22 C -0.12 -1.69 10.05 -39.58 -0.40 -2.09 16 23 C -0.10 -1.52 9.67 -39.58 -0.38 -1.91 16 24 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.80 8.13 -51.93 -0.42 0.38 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.04 0.97 8.14 -51.92 -0.42 0.55 16 30 H 0.04 1.14 8.00 -51.93 -0.42 0.72 16 31 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.13 2.31 8.05 -52.48 -0.42 1.88 16 33 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 34 H 0.12 1.28 8.06 -52.48 -0.42 0.85 16 35 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 36 H 0.12 1.75 7.95 -52.48 -0.42 1.33 16 LS Contribution 330.42 15.07 4.98 4.98 Total: -1.00 -31.35 330.42 -9.00 -40.35 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -5.01 Total: 0.16 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -1.83 Total: -14.24 kcal Atomic # 7 Polarization: -25.76 SS G_CDS: 0.74 Total: -25.02 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.70 Total: -15.43 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -5.05 SS G_CDS: -2.15 Total: -7.20 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.35 -9.00 -40.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413009050.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.478 kcal (2) G-P(sol) polarization free energy of solvation -31.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds