Wall clock time and date at job start Tue Mar 31 2020 01:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45206 * 109.46777 * 2 1 4 4 C 1.34224 * 117.00077 * 179.97438 * 3 2 1 5 5 O 1.20833 * 120.00103 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00302 * 180.02562 * 4 3 2 7 7 H 1.08995 * 109.47469 * 170.00282 * 6 4 3 8 8 S 1.81402 * 109.46800 * 289.99868 * 6 4 3 9 9 C 1.81408 * 103.00041 * 294.99909 * 8 6 4 10 10 C 1.50698 * 109.47022 * 180.02562 * 9 8 6 11 11 H 1.07999 * 120.00019 * 0.02562 * 10 9 8 12 12 C 1.37877 * 119.99512 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99862 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 120.00354 * 0.02562 * 12 10 9 15 15 H 1.48499 * 109.47050 * 89.99707 * 14 12 10 16 16 H 1.48503 * 109.47242 * 209.99666 * 14 12 10 17 17 H 1.48496 * 109.47050 * 329.99412 * 14 12 10 18 18 C 1.50698 * 109.47305 * 49.99412 * 6 4 3 19 19 C 1.38233 * 120.00308 * 299.73144 * 18 6 4 20 20 C 1.38228 * 120.00266 * 179.78509 * 19 18 6 21 21 C 1.38241 * 120.00053 * 0.44489 * 20 19 18 22 22 C 1.38233 * 119.99737 * 359.80843 * 21 20 19 23 23 C 1.38237 * 120.00143 * 359.97438 * 22 21 20 24 24 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47486 * 299.99948 * 1 2 3 26 26 H 1.09001 * 109.47362 * 60.00671 * 1 2 3 27 27 H 1.09000 * 109.47486 * 240.00051 * 2 1 3 28 28 H 1.09001 * 109.47362 * 119.99329 * 2 1 3 29 29 H 1.09004 * 109.46605 * 299.99957 * 9 8 6 30 30 H 1.09000 * 109.46963 * 59.99514 * 9 8 6 31 31 H 0.96996 * 120.00312 * 180.02562 * 13 12 10 32 32 H 1.08005 * 119.99607 * 359.97438 * 19 18 6 33 33 H 1.07995 * 120.00406 * 180.27219 * 20 19 18 34 34 H 1.07991 * 120.00179 * 179.83562 * 21 20 19 35 35 H 1.07994 * 120.00180 * 180.02562 * 22 21 20 36 36 H 1.08001 * 120.00080 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5450 0.0005 5 8 4.0807 0.5868 0.0015 6 6 3.9205 2.9376 0.0012 7 1 4.9945 2.8865 0.1799 8 16 3.6117 3.7203 -1.6059 9 6 4.5857 2.7029 -2.7492 10 6 4.4315 3.2348 -4.1508 11 1 3.8101 4.0986 -4.3353 12 6 5.0846 2.6191 -5.1974 13 7 4.9497 3.0828 -6.4206 14 14 6.1600 1.1254 -4.8782 15 1 5.3403 -0.1077 -4.9903 16 1 7.2575 1.0828 -5.8777 17 1 6.7372 1.2137 -3.5129 18 6 3.2681 3.7506 1.0894 19 6 1.9018 3.9593 1.0715 20 6 1.3027 4.7013 2.0722 21 6 2.0713 5.2424 3.0859 22 6 3.4384 5.0380 3.1010 23 6 4.0368 4.2922 2.1027 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 5.6365 2.7377 -2.4613 30 1 4.2322 1.6726 -2.7101 31 1 5.4089 2.6496 -7.1570 32 1 1.3018 3.5401 0.2773 33 1 0.2347 4.8608 2.0606 34 1 1.6037 5.8243 3.8662 35 1 4.0388 5.4603 3.8931 36 1 5.1049 4.1329 2.1143 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413009051.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:46 Heat of formation + Delta-G solvation = -69.701231 kcal Electronic energy + Delta-G solvation = -19368.713115 eV Core-core repulsion = 16329.961937 eV Total energy + Delta-G solvation = -3038.751178 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.45924 -39.01361 -36.50246 -33.29680 -33.09808 -31.50904 -30.86673 -29.47696 -27.89317 -23.55743 -22.73041 -22.49017 -21.86118 -20.78380 -17.76724 -17.30235 -16.75951 -16.44708 -16.28300 -15.57603 -15.23130 -14.52087 -14.14031 -13.99683 -13.56307 -13.49102 -13.17445 -12.99777 -12.80992 -12.63307 -12.53910 -12.24990 -11.87760 -11.65674 -11.22749 -11.03246 -10.86899 -10.63195 -10.56185 -10.44411 -10.18259 -9.75579 -9.18483 -8.87344 -8.75865 -8.64788 -7.06842 -6.23149 -4.26645 1.11121 1.44027 1.91804 2.61750 2.73988 3.20600 3.27381 3.32666 3.48126 3.86589 4.28428 4.48663 4.66845 4.91042 4.94170 4.99476 5.00414 5.08192 5.16862 5.24312 5.28522 5.51178 5.63608 5.67944 5.77467 5.91218 5.96171 6.09395 6.43605 6.49026 6.53243 6.54276 6.59603 6.59971 6.98985 7.34338 7.85189 8.22892 8.77317 9.32336 10.88363 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.017034 B = 0.005698 C = 0.004907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.329475 B = 4912.870458 C = 5704.321808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.339 6.339 4 C 0.480 3.520 5 O -0.509 6.509 6 C -0.035 4.035 7 H 0.127 0.873 8 S -0.192 6.192 9 C 0.033 3.967 10 C -0.516 4.516 11 H 0.086 0.914 12 C 0.084 3.916 13 N -0.888 5.888 14 Si 0.874 3.126 15 H -0.273 1.273 16 H -0.280 1.280 17 H -0.264 1.264 18 C -0.068 4.068 19 C -0.080 4.080 20 C -0.123 4.123 21 C -0.116 4.116 22 C -0.125 4.125 23 C -0.100 4.100 24 H 0.077 0.923 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.040 0.960 30 H 0.031 0.969 31 H 0.269 0.731 32 H 0.139 0.861 33 H 0.123 0.877 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.262 -1.099 18.793 20.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.255 6.255 4 C 0.320 3.680 5 O -0.397 6.397 6 C -0.163 4.163 7 H 0.145 0.855 8 S 0.039 5.961 9 C -0.114 4.114 10 C -0.555 4.555 11 H 0.104 0.896 12 C -0.121 4.121 13 N -0.525 5.525 14 Si 0.700 3.300 15 H -0.198 1.198 16 H -0.206 1.206 17 H -0.189 1.189 18 C -0.069 4.069 19 C -0.099 4.099 20 C -0.141 4.141 21 C -0.135 4.135 22 C -0.143 4.143 23 C -0.120 4.120 24 H 0.095 0.905 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.058 0.942 30 H 0.049 0.951 31 H 0.079 0.921 32 H 0.157 0.843 33 H 0.141 0.859 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.630 -0.544 18.320 19.853 hybrid contribution 1.525 -2.035 0.142 2.548 sum -6.105 -2.579 18.461 19.615 Atomic orbital electron populations 1.21785 0.92536 1.02750 1.03678 1.23041 0.95479 0.80517 1.02438 1.86515 1.23592 1.31778 1.83652 1.23356 0.81205 0.91595 0.71877 1.90671 1.60606 1.42597 1.45841 1.22138 1.03018 0.90997 1.00181 0.85468 1.87221 1.67890 1.44531 0.96437 1.21628 0.96400 0.96019 0.97389 1.20369 1.31647 1.16276 0.87223 0.89648 1.24806 0.95746 0.96910 0.94615 1.69852 1.42723 1.40716 0.99205 0.86863 0.80896 0.83433 0.78817 1.19800 1.20587 1.18870 1.18989 0.94222 0.99358 0.94342 1.21250 0.93945 0.96495 0.98255 1.21135 0.99962 0.98308 0.94716 1.21176 0.94090 0.99622 0.98599 1.21040 0.95029 0.99475 0.98795 1.21019 0.99762 0.97330 0.93880 0.90464 0.91596 0.91049 0.91121 0.91582 0.94183 0.95112 0.92094 0.84348 0.85858 0.86188 0.85965 0.85821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 10.29 37.16 0.38 -1.08 16 2 C 0.06 0.78 6.19 37.16 0.23 1.01 16 3 O -0.34 -5.44 7.98 -39.24 -0.31 -5.75 16 4 C 0.48 8.73 6.36 36.00 0.23 8.96 16 5 O -0.51 -10.37 16.84 -18.76 -0.32 -10.69 16 6 C -0.03 -0.61 2.89 -29.04 -0.08 -0.69 16 7 H 0.13 2.11 7.86 -51.93 -0.41 1.70 16 8 S -0.19 -4.03 20.66 -107.50 -2.22 -6.25 16 9 C 0.03 0.83 4.55 36.00 0.16 0.99 16 10 C -0.52 -14.77 9.68 -34.44 -0.33 -15.11 16 11 H 0.09 2.65 7.96 -52.49 -0.42 2.23 16 12 C 0.08 2.43 5.47 -17.82 -0.10 2.33 16 13 N -0.89 -26.81 13.96 55.43 0.77 -26.03 16 14 Si 0.87 21.57 27.47 -169.99 -4.67 16.90 16 15 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.26 -6.38 6.54 56.52 0.37 -6.01 16 18 C -0.07 -1.01 4.77 -104.62 -0.50 -1.51 16 19 C -0.08 -1.12 8.30 -39.59 -0.33 -1.44 16 20 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 21 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 22 C -0.13 -1.35 10.05 -39.58 -0.40 -1.75 16 23 C -0.10 -1.27 9.67 -39.58 -0.38 -1.66 16 24 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.07 0.99 8.13 -51.93 -0.42 0.57 16 28 H 0.07 0.81 8.13 -51.93 -0.42 0.39 16 29 H 0.04 0.98 7.20 -51.92 -0.37 0.61 16 30 H 0.03 0.77 7.43 -51.92 -0.39 0.39 16 31 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 32 H 0.14 2.01 6.87 -52.48 -0.36 1.65 16 33 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.12 1.38 7.95 -52.49 -0.42 0.96 16 LS Contribution 324.41 15.07 4.89 4.89 Total: -1.00 -32.07 324.41 -8.68 -40.75 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -4.91 Total: -0.47 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: -1.91 Total: -13.36 kcal Atomic # 7 Polarization: -26.81 SS G_CDS: 0.77 Total: -26.03 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -0.63 Total: -16.44 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Atomic # 16 Polarization: -4.03 SS G_CDS: -2.22 Total: -6.25 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.07 -8.68 -40.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413009051.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.947 kcal (2) G-P(sol) polarization free energy of solvation -32.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds