Wall clock time and date at job start Tue Mar 31 2020 01:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45206 * 109.46777 * 2 1 4 4 C 1.34224 * 117.00077 * 179.97438 * 3 2 1 5 5 O 1.20833 * 120.00103 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00302 * 180.02562 * 4 3 2 7 7 H 1.08995 * 109.47469 * 170.00282 * 6 4 3 8 8 S 1.81402 * 109.46800 * 289.99868 * 6 4 3 9 9 C 1.81408 * 103.00041 * 294.99909 * 8 6 4 10 10 C 1.50698 * 109.47022 * 180.02562 * 9 8 6 11 11 H 1.07999 * 120.00019 * 0.02562 * 10 9 8 12 12 C 1.37877 * 119.99512 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99862 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 120.00354 * 0.02562 * 12 10 9 15 15 H 1.48499 * 109.47050 * 89.99707 * 14 12 10 16 16 H 1.48503 * 109.47242 * 209.99666 * 14 12 10 17 17 H 1.48496 * 109.47050 * 329.99412 * 14 12 10 18 18 C 1.50698 * 109.47305 * 49.99412 * 6 4 3 19 19 C 1.38233 * 120.00308 * 299.73144 * 18 6 4 20 20 C 1.38228 * 120.00266 * 179.78509 * 19 18 6 21 21 C 1.38241 * 120.00053 * 0.44489 * 20 19 18 22 22 C 1.38233 * 119.99737 * 359.80843 * 21 20 19 23 23 C 1.38237 * 120.00143 * 359.97438 * 22 21 20 24 24 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47486 * 299.99948 * 1 2 3 26 26 H 1.09001 * 109.47362 * 60.00671 * 1 2 3 27 27 H 1.09000 * 109.47486 * 240.00051 * 2 1 3 28 28 H 1.09001 * 109.47362 * 119.99329 * 2 1 3 29 29 H 1.09004 * 109.46605 * 299.99957 * 9 8 6 30 30 H 1.09000 * 109.46963 * 59.99514 * 9 8 6 31 31 H 0.96996 * 120.00312 * 180.02562 * 13 12 10 32 32 H 1.08005 * 119.99607 * 359.97438 * 19 18 6 33 33 H 1.07995 * 120.00406 * 180.27219 * 20 19 18 34 34 H 1.07991 * 120.00179 * 179.83562 * 21 20 19 35 35 H 1.07994 * 120.00180 * 180.02562 * 22 21 20 36 36 H 1.08001 * 120.00080 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5450 0.0005 5 8 4.0807 0.5868 0.0015 6 6 3.9205 2.9376 0.0012 7 1 4.9945 2.8865 0.1799 8 16 3.6117 3.7203 -1.6059 9 6 4.5857 2.7029 -2.7492 10 6 4.4315 3.2348 -4.1508 11 1 3.8101 4.0986 -4.3353 12 6 5.0846 2.6191 -5.1974 13 7 4.9497 3.0828 -6.4206 14 14 6.1600 1.1254 -4.8782 15 1 5.3403 -0.1077 -4.9903 16 1 7.2575 1.0828 -5.8777 17 1 6.7372 1.2137 -3.5129 18 6 3.2681 3.7506 1.0894 19 6 1.9018 3.9593 1.0715 20 6 1.3027 4.7013 2.0722 21 6 2.0713 5.2424 3.0859 22 6 3.4384 5.0380 3.1010 23 6 4.0368 4.2922 2.1027 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 5.6365 2.7377 -2.4613 30 1 4.2322 1.6726 -2.7101 31 1 5.4089 2.6496 -7.1570 32 1 1.3018 3.5401 0.2773 33 1 0.2347 4.8608 2.0606 34 1 1.6037 5.8243 3.8662 35 1 4.0388 5.4603 3.8931 36 1 5.1049 4.1329 2.1143 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413009051.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:45 Heat of formation + Delta-G solvation = -86.860053 kcal Electronic energy + Delta-G solvation = -19369.457178 eV Core-core repulsion = 16329.961937 eV Total energy + Delta-G solvation = -3039.495240 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.79123 -39.99509 -37.84760 -35.30204 -34.41597 -32.47212 -31.78547 -31.58239 -29.05044 -24.83186 -24.55807 -23.41583 -22.98652 -22.01274 -19.30767 -19.02645 -18.29707 -17.74319 -17.41018 -16.92463 -16.39233 -16.15413 -15.65803 -15.24936 -14.91099 -14.86699 -14.51819 -14.35232 -14.13819 -14.09882 -13.62658 -13.56029 -12.98816 -12.80684 -12.66600 -12.44445 -12.32977 -12.10354 -11.96171 -11.84278 -11.83121 -11.58910 -10.99287 -10.94614 -9.79526 -9.67619 -8.78040 -8.45850 -6.55607 -0.09134 0.52752 0.63069 1.09177 1.25749 1.27632 1.37818 1.49301 1.77742 2.20387 2.86304 2.91664 3.26587 3.46197 3.83102 3.96087 4.03789 4.19647 4.20315 4.28839 4.35065 4.45582 4.56859 4.63937 4.71715 4.78746 4.91027 5.00153 5.07946 5.19914 5.20992 5.33630 5.55786 5.62331 5.63972 5.97709 6.09963 6.47240 6.48375 7.07474 8.69433 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.017034 B = 0.005698 C = 0.004907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.329475 B = 4912.870458 C = 5704.321808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.048 3.952 3 O -0.339 6.339 4 C 0.479 3.521 5 O -0.536 6.536 6 C -0.022 4.022 7 H 0.132 0.868 8 S -0.201 6.201 9 C 0.033 3.967 10 C -0.528 4.528 11 H 0.047 0.953 12 C 0.032 3.968 13 N -0.930 5.930 14 Si 0.939 3.061 15 H -0.266 1.266 16 H -0.267 1.267 17 H -0.256 1.256 18 C -0.093 4.093 19 C -0.097 4.097 20 C -0.125 4.125 21 C -0.107 4.107 22 C -0.123 4.123 23 C -0.108 4.108 24 H 0.103 0.897 25 H 0.077 0.923 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.042 0.958 30 H 0.024 0.976 31 H 0.275 0.725 32 H 0.123 0.877 33 H 0.146 0.854 34 H 0.155 0.845 35 H 0.153 0.847 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.593 -1.316 21.716 23.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.025 4.025 3 O -0.255 6.255 4 C 0.320 3.680 5 O -0.427 6.427 6 C -0.150 4.150 7 H 0.150 0.850 8 S 0.031 5.969 9 C -0.115 4.115 10 C -0.567 4.567 11 H 0.065 0.935 12 C -0.169 4.169 13 N -0.568 5.568 14 Si 0.761 3.239 15 H -0.191 1.191 16 H -0.191 1.191 17 H -0.180 1.180 18 C -0.095 4.095 19 C -0.116 4.116 20 C -0.143 4.143 21 C -0.126 4.126 22 C -0.141 4.141 23 C -0.128 4.128 24 H 0.122 0.878 25 H 0.096 0.904 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.060 0.940 30 H 0.042 0.958 31 H 0.084 0.916 32 H 0.141 0.859 33 H 0.164 0.836 34 H 0.172 0.828 35 H 0.171 0.829 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.983 -0.749 21.232 22.696 hybrid contribution 1.490 -1.879 -0.631 2.480 sum -6.493 -2.628 20.602 21.760 Atomic orbital electron populations 1.21807 0.89680 1.04542 1.03865 1.23398 0.97726 0.79120 1.02280 1.86533 1.22389 1.33598 1.82932 1.23524 0.81780 0.91553 0.71174 1.90646 1.61319 1.43431 1.47328 1.22148 1.03728 0.90905 0.98259 0.84997 1.87099 1.67143 1.44215 0.98421 1.21366 0.97262 0.96169 0.96667 1.20523 1.31134 1.15339 0.89680 0.93521 1.25690 0.97059 0.99970 0.94218 1.69972 1.44035 1.42482 1.00307 0.85836 0.79313 0.79412 0.79326 1.19080 1.19115 1.17958 1.18940 0.94852 1.01034 0.94642 1.21253 0.93628 0.97701 0.99026 1.21434 1.01359 0.97417 0.94109 1.21628 0.93970 0.98432 0.98524 1.21440 0.95687 0.98295 0.98652 1.21258 1.00395 0.97292 0.93833 0.87823 0.90429 0.91791 0.92481 0.90600 0.93972 0.95763 0.91552 0.85857 0.83577 0.82760 0.82894 0.84726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 10.29 71.98 0.74 -1.81 16 2 C 0.05 1.24 6.19 71.98 0.45 1.69 16 3 O -0.34 -10.89 7.98 -51.35 -0.41 -11.30 16 4 C 0.48 17.52 6.36 71.23 0.45 17.97 16 5 O -0.54 -21.99 16.84 21.94 0.37 -21.62 16 6 C -0.02 -0.76 2.89 29.10 0.08 -0.67 16 7 H 0.13 4.37 7.86 -2.39 -0.02 4.35 16 8 S -0.20 -8.61 20.66 -56.49 -1.17 -9.78 16 9 C 0.03 1.69 4.55 71.24 0.32 2.02 16 10 C -0.53 -31.35 9.68 25.60 0.25 -31.10 16 11 H 0.05 3.06 7.96 -2.91 -0.02 3.03 16 12 C 0.03 1.89 5.47 84.65 0.46 2.35 16 13 N -0.93 -57.56 13.96 21.45 0.30 -57.26 16 14 Si 0.94 44.82 27.47 68.60 1.88 46.70 16 15 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 16 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 17 H -0.26 -11.76 6.54 99.48 0.65 -11.11 16 18 C -0.09 -2.69 4.77 -19.87 -0.09 -2.78 16 19 C -0.10 -2.59 8.30 22.27 0.18 -2.40 16 20 C -0.13 -2.53 10.05 22.27 0.22 -2.30 16 21 C -0.11 -1.79 10.05 22.27 0.22 -1.57 16 22 C -0.12 -2.20 10.05 22.27 0.22 -1.98 16 23 C -0.11 -2.52 9.67 22.27 0.22 -2.30 16 24 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.06 1.62 8.13 -2.39 -0.02 1.60 16 28 H 0.08 1.80 8.13 -2.39 -0.02 1.78 16 29 H 0.04 2.09 7.20 -2.39 -0.02 2.07 16 30 H 0.02 1.24 7.43 -2.39 -0.02 1.22 16 31 H 0.28 15.69 8.31 -92.71 -0.77 14.92 16 32 H 0.12 3.60 6.87 -2.91 -0.02 3.58 16 33 H 0.15 2.20 8.06 -2.91 -0.02 2.17 16 34 H 0.15 1.55 8.06 -2.92 -0.02 1.52 16 35 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 36 H 0.13 2.73 7.95 -2.91 -0.02 2.71 16 Total: -1.00 -71.49 324.41 5.72 -65.77 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 1.01 Total: 10.39 kcal Atomic # 6 Polarization: -26.63 SS G_CDS: 3.74 Total: -22.90 kcal Atomic # 7 Polarization: -57.56 SS G_CDS: 0.30 Total: -57.26 kcal Atomic # 8 Polarization: -32.88 SS G_CDS: -0.04 Total: -32.92 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.88 Total: 46.70 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.17 Total: -9.78 kcal Total: -71.49 5.72 -65.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413009051.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.091 kcal (2) G-P(sol) polarization free energy of solvation -71.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds