Wall clock time and date at job start Tue Mar 31 2020 01:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34223 * 117.00322 * 2 1 4 4 O 1.20828 * 119.99965 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00174 * 179.97438 * 3 2 1 6 6 H 1.08997 * 109.47023 * 169.99620 * 5 3 2 7 7 S 1.81395 * 109.47329 * 290.00627 * 5 3 2 8 8 C 1.81399 * 102.99849 * 294.99468 * 7 5 3 9 9 C 1.50706 * 109.46908 * 179.97438 * 8 7 5 10 10 H 1.07997 * 120.00211 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99727 * 180.02562 * 9 8 7 12 12 N 1.31513 * 119.99880 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99727 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.46851 * 60.00292 * 13 11 9 15 15 H 1.48499 * 109.46804 * 180.02562 * 13 11 9 16 16 H 1.48492 * 109.47245 * 300.00176 * 13 11 9 17 17 C 1.50707 * 109.46542 * 50.00431 * 5 3 2 18 18 C 1.38253 * 119.99921 * 264.97478 * 17 5 3 19 19 C 1.38217 * 119.99821 * 179.97438 * 18 17 5 20 20 C 1.38256 * 120.00102 * 359.97438 * 19 18 17 21 21 C 1.38212 * 119.99940 * 359.80658 * 20 19 18 22 22 C 1.38214 * 119.99903 * 85.00114 * 17 5 3 23 23 C 1.50703 * 120.00023 * 359.97438 * 22 17 5 24 24 H 1.09001 * 109.46884 * 300.00160 * 1 2 3 25 25 H 1.08999 * 109.46780 * 59.99551 * 1 2 3 26 26 H 1.08994 * 109.47513 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47106 * 300.00251 * 8 7 5 28 28 H 1.09001 * 109.46783 * 60.00289 * 8 7 5 29 29 H 0.97006 * 119.99279 * 179.97438 * 12 11 9 30 30 H 1.07997 * 119.99984 * 359.97438 * 18 17 5 31 31 H 1.07998 * 119.99767 * 179.97438 * 19 18 17 32 32 H 1.07999 * 120.00232 * 179.97438 * 20 19 18 33 33 H 1.08000 * 120.00193 * 180.22780 * 21 20 19 34 34 H 1.09002 * 109.47152 * 90.00127 * 23 22 17 35 35 H 1.09001 * 109.46980 * 330.00228 * 23 22 17 36 36 H 1.09004 * 109.47113 * 210.00208 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 1 3.8764 2.3043 -0.1780 7 16 4.2003 0.7224 1.6079 8 6 3.5651 1.9797 2.7509 9 6 4.0131 1.6561 4.1530 10 1 4.6196 0.7819 4.3379 11 6 3.6486 2.4763 5.1997 12 7 2.9096 3.5406 4.9745 13 14 4.2045 2.0756 6.9375 14 1 5.6885 2.0626 6.9918 15 1 3.6834 3.1041 7.8733 16 1 3.6832 0.7414 7.3287 17 6 4.1162 0.3888 -1.0876 18 6 4.5134 -0.9023 -0.7931 19 6 5.0170 -1.7150 -1.7912 20 6 5.1231 -1.2370 -3.0841 21 6 4.7218 0.0522 -3.3794 22 6 4.2237 0.8672 -2.3798 23 6 3.7908 2.2745 -2.7008 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.9482 2.9588 2.4634 28 1 2.4759 1.9897 2.7111 29 1 2.6529 4.1173 5.7110 30 1 4.4301 -1.2758 0.2168 31 1 5.3277 -2.7234 -1.5610 32 1 5.5171 -1.8719 -3.8640 33 1 4.8013 0.4243 -4.3902 34 1 4.6350 2.9522 -2.5739 35 1 2.9845 2.5688 -2.0289 36 1 3.4396 2.3204 -3.7317 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413009679.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:19:54 Heat of formation + Delta-G solvation = -72.603276 kcal Electronic energy + Delta-G solvation = -19502.281242 eV Core-core repulsion = 16463.404222 eV Total energy + Delta-G solvation = -3038.877020 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -40.39303 -39.16391 -36.20117 -33.47109 -33.19068 -32.26076 -28.90220 -28.38642 -27.10109 -26.44829 -23.13913 -22.28991 -21.48234 -20.43715 -17.54093 -17.02819 -16.58521 -16.20554 -15.97779 -15.47976 -15.11428 -14.71958 -14.08382 -13.88648 -13.38661 -13.31372 -13.06226 -12.98388 -12.44380 -12.32784 -12.21542 -12.16924 -12.01627 -11.84380 -11.07272 -11.01052 -10.88223 -10.73540 -10.53610 -10.50855 -10.05810 -9.65071 -8.99853 -8.69654 -8.64618 -8.53726 -6.93836 -6.21220 -4.27714 1.28663 1.47780 1.92130 2.74112 2.94453 3.26627 3.30030 3.33590 3.65977 3.84623 4.32652 4.60682 4.85776 4.93992 5.01470 5.15043 5.15697 5.27454 5.31155 5.36042 5.40483 5.57914 5.63708 5.69336 5.75973 5.88566 6.07560 6.21139 6.51047 6.59357 6.60716 6.68251 7.01881 7.05495 7.07090 7.70132 7.94076 7.97900 8.73465 9.35711 10.89660 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.020900 B = 0.005074 C = 0.004674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.392127 B = 5516.735445 C = 5988.930936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.341 6.341 3 C 0.480 3.520 4 O -0.504 6.504 5 C -0.027 4.027 6 H 0.129 0.871 7 S -0.231 6.231 8 C 0.077 3.923 9 C -0.516 4.516 10 H 0.068 0.932 11 C 0.068 3.932 12 N -0.888 5.888 13 Si 0.908 3.092 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.273 1.273 17 C -0.065 4.065 18 C -0.079 4.079 19 C -0.127 4.127 20 C -0.114 4.114 21 C -0.125 4.125 22 C -0.072 4.072 23 C -0.125 4.125 24 H 0.064 0.936 25 H 0.058 0.942 26 H 0.100 0.900 27 H 0.040 0.960 28 H 0.037 0.963 29 H 0.267 0.733 30 H 0.140 0.860 31 H 0.123 0.877 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.351 -7.869 -15.642 17.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.256 6.256 3 C 0.319 3.681 4 O -0.392 6.392 5 C -0.156 4.156 6 H 0.147 0.853 7 S -0.001 6.001 8 C -0.070 4.070 9 C -0.556 4.556 10 H 0.086 0.914 11 C -0.137 4.137 12 N -0.526 5.526 13 Si 0.735 3.265 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.199 1.199 17 C -0.066 4.066 18 C -0.098 4.098 19 C -0.145 4.145 20 C -0.132 4.132 21 C -0.144 4.144 22 C -0.074 4.074 23 C -0.182 4.182 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.118 0.882 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.077 0.923 30 H 0.157 0.843 31 H 0.141 0.859 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.663 -8.295 -15.307 17.423 hybrid contribution -0.729 1.109 0.759 1.529 sum -0.066 -7.187 -14.547 16.226 Atomic orbital electron populations 1.23255 0.76791 1.03456 1.02403 1.86519 1.22794 1.32568 1.83768 1.23341 0.91064 0.81709 0.71937 1.90682 1.66654 1.36307 1.45553 1.21983 0.89604 1.04418 0.99590 0.85329 1.86833 1.70949 1.44330 0.98024 1.21277 0.98648 0.92594 0.94444 1.20547 1.34296 1.11318 0.89419 0.91381 1.24972 0.94663 0.94588 0.99489 1.69967 1.35720 1.14161 1.32729 0.86388 0.79199 0.78229 0.82703 1.19811 1.20998 1.19859 1.18895 1.01340 0.94442 0.91945 1.21220 0.95648 0.92645 1.00273 1.21109 1.00579 0.99878 0.92915 1.21129 0.99690 0.95719 0.96691 1.20897 1.00724 0.94197 0.98538 1.19756 0.98616 0.96479 0.92510 1.20929 1.01997 0.92912 1.02358 0.91681 0.92327 0.88199 0.94147 0.94500 0.92325 0.84266 0.85881 0.86203 0.86084 0.90556 0.91216 0.91322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.56 101.05 1.07 1.55 16 2 O -0.34 -5.99 10.29 -39.24 -0.40 -6.39 16 3 C 0.48 9.31 5.68 36.01 0.20 9.51 16 4 O -0.50 -10.81 16.55 -18.75 -0.31 -11.12 16 5 C -0.03 -0.50 2.20 -29.03 -0.06 -0.57 16 6 H 0.13 2.35 6.98 -51.93 -0.36 1.99 16 7 S -0.23 -4.98 18.97 -107.50 -2.04 -7.02 16 8 C 0.08 2.04 5.48 36.01 0.20 2.24 16 9 C -0.52 -14.55 9.13 -34.44 -0.31 -14.87 16 10 H 0.07 1.88 7.71 -52.49 -0.40 1.48 16 11 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 12 N -0.89 -26.20 13.29 55.43 0.74 -25.46 16 13 Si 0.91 21.33 29.54 -169.99 -5.02 16.31 16 14 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 15 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 17 C -0.07 -1.04 4.76 -104.62 -0.50 -1.54 16 18 C -0.08 -1.19 9.10 -39.58 -0.36 -1.55 16 19 C -0.13 -1.56 10.05 -39.58 -0.40 -1.96 16 20 C -0.11 -1.27 10.05 -39.58 -0.40 -1.66 16 21 C -0.13 -1.46 9.70 -39.58 -0.38 -1.85 16 22 C -0.07 -0.99 5.88 -104.62 -0.62 -1.61 16 23 C -0.13 -1.54 9.22 36.01 0.33 -1.21 16 24 H 0.06 0.95 8.13 -51.93 -0.42 0.53 16 25 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 26 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.04 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.04 1.05 8.00 -51.92 -0.42 0.64 16 29 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.14 2.22 6.48 -52.49 -0.34 1.88 16 31 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.99 5.93 -51.93 -0.31 0.68 16 36 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 LS Contribution 323.56 15.07 4.88 4.88 Total: -1.00 -31.59 323.56 -8.26 -39.84 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -4.77 Total: 0.67 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: -1.33 Total: -11.71 kcal Atomic # 7 Polarization: -26.20 SS G_CDS: 0.74 Total: -25.46 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.71 Total: -17.51 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -4.98 SS G_CDS: -2.04 Total: -7.02 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.59 -8.26 -39.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413009679.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.759 kcal (2) G-P(sol) polarization free energy of solvation -31.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds