Wall clock time and date at job start Tue Mar 31 2020 01:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21293 * 120.00345 * 2 1 4 4 C 1.46793 * 119.99825 * 179.97438 * 2 1 3 5 5 C 1.40012 * 120.22224 * 0.02562 * 4 2 1 6 6 C 1.37673 * 119.88240 * 179.97438 * 5 4 2 7 7 C 1.38635 * 120.33597 * 359.97438 * 6 5 4 8 8 C 1.38050 * 120.45286 * 0.02562 * 7 6 5 9 9 C 1.38683 * 120.11330 * 359.97438 * 8 7 6 10 10 O 1.35601 * 120.17278 * 180.02562 * 9 8 7 11 11 C 1.42901 * 116.99687 * 359.96090 * 10 9 8 12 12 C 1.53001 * 109.47161 * 179.97438 * 11 10 9 13 13 S 1.81394 * 109.47204 * 180.02562 * 12 11 10 14 14 C 1.81395 * 103.00122 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.47152 * 180.02562 * 14 13 12 16 16 H 1.07993 * 120.00194 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99872 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00409 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99972 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.46923 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46762 * 120.00115 * 19 17 15 22 22 H 1.48502 * 109.47326 * 239.99774 * 19 17 15 23 23 H 1.09011 * 109.47436 * 239.99998 * 1 2 3 24 24 H 1.09004 * 109.47211 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47123 * 120.00207 * 1 2 3 26 26 H 1.08006 * 120.06526 * 359.94996 * 5 4 2 27 27 H 1.08000 * 119.83508 * 179.97438 * 6 5 4 28 28 H 1.07994 * 119.76892 * 179.74631 * 7 6 5 29 29 H 1.07999 * 119.94057 * 179.97438 * 8 7 6 30 30 H 1.08995 * 109.47110 * 300.00217 * 11 10 9 31 31 H 1.09000 * 109.47284 * 59.99932 * 11 10 9 32 32 H 1.09001 * 109.46799 * 300.00300 * 12 11 10 33 33 H 1.09000 * 109.46712 * 60.00029 * 12 11 10 34 34 H 1.08997 * 109.47175 * 300.00151 * 14 13 12 35 35 H 1.08998 * 109.47311 * 59.99978 * 14 13 12 36 36 H 0.96990 * 120.00464 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 6 2.2409 -1.2713 0.0006 5 6 1.5455 -2.4865 0.0006 6 6 2.2409 -3.6747 0.0006 7 6 3.6272 -3.6747 0.0000 8 6 4.3269 -2.4846 0.0000 9 6 3.6453 -1.2768 0.0000 10 8 4.3313 -0.1071 -0.0005 11 6 5.7578 -0.1917 -0.0002 12 6 6.3523 1.2181 -0.0015 13 16 8.1631 1.1107 -0.0019 14 6 8.6751 2.8509 -0.0027 15 6 10.1800 2.9317 -0.0037 16 1 10.7694 2.0268 -0.0034 17 6 10.8043 4.1611 -0.0039 18 7 10.0865 5.2632 -0.0037 19 14 12.6696 4.2614 -0.0044 20 1 13.2390 2.8899 -0.0051 21 1 13.1259 4.9870 -1.2171 22 1 13.1267 4.9871 1.2080 23 1 -0.3634 -0.5139 0.8901 24 1 -0.3634 1.0277 0.0005 25 1 -0.3633 -0.5139 -0.8899 26 1 0.4655 -2.4919 0.0010 27 1 1.7037 -4.6116 0.0010 28 1 4.1635 -4.6121 0.0042 29 1 5.4068 -2.4942 0.0000 30 1 6.0899 -0.7257 0.8901 31 1 6.0903 -0.7267 -0.8898 32 1 6.0202 1.7516 -0.8921 33 1 6.0199 1.7533 0.8879 34 1 8.2845 3.3441 -0.8927 35 1 8.2849 3.3448 0.8872 36 1 10.5257 6.1280 -0.0042 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413016136.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:01 Heat of formation + Delta-G solvation = -80.342952 kcal Electronic energy + Delta-G solvation = -18309.304491 eV Core-core repulsion = 15270.091853 eV Total energy + Delta-G solvation = -3039.212638 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.54356 -39.74944 -38.41940 -35.34335 -33.24574 -32.91155 -30.76579 -30.67515 -30.05219 -25.80030 -24.99839 -24.36827 -22.64191 -20.89221 -19.31264 -18.68397 -17.44462 -17.43651 -17.29180 -17.00219 -16.32775 -15.94113 -15.76081 -15.52181 -15.15403 -15.03022 -14.65521 -14.56583 -14.20661 -14.08360 -13.21185 -13.20033 -13.12467 -12.93080 -12.77245 -12.63624 -12.51269 -12.27685 -12.01211 -11.93799 -11.60213 -10.89043 -10.79237 -10.61557 -10.05695 -9.29489 -8.61758 -8.37121 -6.51821 -0.28337 0.40992 0.60127 1.39120 1.39646 1.50714 1.54409 1.83164 2.28350 2.35640 2.80472 2.97626 3.16145 3.55412 3.65624 3.84135 3.95932 4.09672 4.20985 4.29981 4.36660 4.43938 4.51584 4.59843 4.66798 4.70141 4.85181 4.87746 4.93058 5.12618 5.26542 5.37525 5.48242 5.52809 5.77606 5.81029 6.28888 6.56267 6.69563 7.16964 8.75619 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.032834 B = 0.002950 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.580428 B = 9487.959525 C =10309.489818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.379 3.621 3 O -0.502 6.502 4 C -0.237 4.237 5 C -0.025 4.025 6 C -0.169 4.169 7 C -0.043 4.043 8 C -0.239 4.239 9 C 0.151 3.849 10 O -0.311 6.311 11 C 0.088 3.912 12 C -0.085 4.085 13 S -0.274 6.274 14 C 0.091 3.909 15 C -0.537 4.537 16 H 0.067 0.933 17 C 0.012 3.988 18 N -0.927 5.927 19 Si 0.983 3.017 20 H -0.262 1.262 21 H -0.272 1.272 22 H -0.272 1.272 23 H 0.120 0.880 24 H 0.075 0.925 25 H 0.120 0.880 26 H 0.177 0.823 27 H 0.167 0.833 28 H 0.158 0.842 29 H 0.136 0.864 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.015 0.985 35 H 0.015 0.985 36 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.489 -20.753 0.016 29.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.261 3.739 3 O -0.381 6.381 4 C -0.239 4.239 5 C -0.042 4.042 6 C -0.187 4.187 7 C -0.061 4.061 8 C -0.257 4.257 9 C 0.103 3.897 10 O -0.224 6.224 11 C 0.012 3.988 12 C -0.233 4.233 13 S -0.048 6.048 14 C -0.056 4.056 15 C -0.576 4.576 16 H 0.085 0.915 17 C -0.188 4.188 18 N -0.566 5.566 19 Si 0.805 3.195 20 H -0.186 1.186 21 H -0.197 1.197 22 H -0.197 1.197 23 H 0.138 0.862 24 H 0.094 0.906 25 H 0.138 0.862 26 H 0.194 0.806 27 H 0.185 0.815 28 H 0.176 0.824 29 H 0.154 0.846 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.033 0.967 35 H 0.033 0.967 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.623 -20.709 0.016 28.530 hybrid contribution 0.504 1.788 -0.001 1.858 sum -19.119 -18.921 0.016 26.898 Atomic orbital electron populations 1.22257 0.89939 1.05543 1.06775 1.23108 0.93688 0.86954 0.70178 1.90622 1.73453 1.35804 1.38260 1.20338 0.90358 0.97376 1.15801 1.21726 1.01787 0.89203 0.91519 1.21518 0.93922 0.99473 1.03770 1.21632 0.95273 0.97619 0.91597 1.21531 1.01392 0.92148 1.10665 1.19831 0.91914 0.85318 0.92598 1.86220 1.19854 1.29257 1.87070 1.22389 0.77687 0.95400 1.03335 1.23046 0.94774 1.00207 1.05278 1.86090 1.02604 1.18016 1.98070 1.20813 0.99745 0.86926 0.98141 1.21003 0.89950 0.93447 1.53166 0.91451 1.26000 1.04721 0.94513 0.93614 1.70080 1.38136 0.98457 1.49903 0.85137 0.77314 0.78788 0.78239 1.18573 1.19735 1.19725 0.86188 0.90573 0.86187 0.80578 0.81516 0.82445 0.84589 0.89972 0.89981 0.90434 0.90431 0.96691 0.96689 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.31 8.93 71.23 0.64 -1.67 16 2 C 0.38 9.36 7.22 27.92 0.20 9.56 16 3 O -0.50 -18.31 15.90 17.88 0.28 -18.03 16 4 C -0.24 -5.31 5.88 -20.07 -0.12 -5.43 16 5 C -0.02 -0.30 9.46 22.57 0.21 -0.09 16 6 C -0.17 -1.75 10.02 22.23 0.22 -1.53 16 7 C -0.04 -0.60 10.03 22.32 0.22 -0.38 16 8 C -0.24 -5.06 9.03 22.33 0.20 -4.86 16 9 C 0.15 4.13 6.71 22.91 0.15 4.28 16 10 O -0.31 -10.65 8.21 -68.17 -0.56 -11.21 16 11 C 0.09 2.78 4.75 71.98 0.34 3.13 16 12 C -0.08 -3.27 6.31 71.98 0.45 -2.82 16 13 S -0.27 -12.34 21.66 -56.49 -1.22 -13.56 16 14 C 0.09 5.08 5.70 71.24 0.41 5.48 16 15 C -0.54 -31.33 9.13 25.60 0.23 -31.09 16 16 H 0.07 3.86 7.71 -2.91 -0.02 3.84 16 17 C 0.01 0.70 5.46 84.65 0.46 1.17 16 18 N -0.93 -55.96 13.29 21.45 0.28 -55.67 16 19 Si 0.98 44.20 29.54 68.60 2.03 46.23 16 20 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 21 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 22 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 23 H 0.12 0.77 8.09 -2.38 -0.02 0.75 16 24 H 0.08 1.08 8.12 -2.38 -0.02 1.06 16 25 H 0.12 0.77 8.09 -2.39 -0.02 0.75 16 26 H 0.18 0.65 7.05 -2.91 -0.02 0.63 16 27 H 0.17 0.51 8.06 -2.91 -0.02 0.49 16 28 H 0.16 1.24 8.06 -2.91 -0.02 1.21 16 29 H 0.14 2.75 6.30 -2.91 -0.02 2.73 16 30 H 0.08 2.38 7.66 -2.39 -0.02 2.36 16 31 H 0.08 2.37 7.66 -2.39 -0.02 2.36 16 32 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 33 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 34 H 0.01 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.01 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.27 15.17 8.31 -92.72 -0.77 14.40 16 Total: -1.00 -76.38 326.19 5.51 -70.86 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: 1.07 Total: 5.63 kcal Atomic # 6 Polarization: -27.88 SS G_CDS: 3.63 Total: -24.25 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: 0.28 Total: -55.67 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -0.28 Total: -29.23 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 16 Polarization: -12.34 SS G_CDS: -1.22 Total: -13.56 kcal Total: -76.38 5.51 -70.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413016136.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.482 kcal (2) G-P(sol) polarization free energy of solvation -76.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds