Wall clock time and date at job start Tue Mar 31 2020 00:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47389 * 2 1 4 4 C 1.36929 * 119.99709 * 93.45855 * 3 2 1 5 5 H 1.08005 * 119.99811 * 214.54270 * 4 3 2 6 6 C 1.38812 * 120.00350 * 34.27332 * 4 3 2 7 7 N 1.31615 * 119.99605 * 22.09703 * 6 4 3 8 8 Si 1.86802 * 120.00080 * 202.09073 * 6 4 3 9 9 H 1.48501 * 109.47004 * 90.00196 * 8 6 4 10 10 H 1.48501 * 109.47155 * 209.99976 * 8 6 4 11 11 H 1.48495 * 109.47366 * 330.00119 * 8 6 4 12 12 C 1.46501 * 119.99965 * 273.45961 * 3 2 1 13 13 C 1.50698 * 109.47161 * 270.00245 * 12 3 2 14 14 N 1.27896 * 124.23795 * 89.69600 * 13 12 3 15 15 C 1.34721 * 117.84379 * 179.77341 * 14 13 12 16 16 C 1.40959 * 129.65699 * 180.21893 * 15 14 13 17 17 C 1.36172 * 120.46065 * 180.32559 * 16 15 14 18 18 C 1.38988 * 120.74891 * 359.97438 * 17 16 15 19 19 F 1.35097 * 119.99138 * 180.02562 * 18 17 16 20 20 C 1.37845 * 120.01761 * 359.97438 * 18 17 16 21 21 C 1.39344 * 119.93597 * 0.02562 * 20 18 17 22 22 S 1.70650 * 124.23206 * 269.99888 * 13 12 3 23 23 H 1.09002 * 109.47481 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.47271 * 300.00256 * 1 2 3 25 25 H 1.09003 * 109.47217 * 59.99740 * 1 2 3 26 26 H 1.09006 * 109.47271 * 239.99744 * 2 1 3 27 27 H 1.09003 * 109.47217 * 120.00260 * 2 1 3 28 28 H 0.97009 * 119.99551 * 179.97438 * 7 6 4 29 29 H 1.09004 * 109.46861 * 29.99455 * 12 3 2 30 30 H 1.08993 * 109.47153 * 149.99851 * 12 3 2 31 31 H 1.08001 * 119.77354 * 0.31734 * 16 15 14 32 32 H 1.07997 * 119.62618 * 179.97438 * 17 16 15 33 33 H 1.08003 * 120.03690 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3141 2.0028 1.1837 5 1 2.1321 3.0612 1.2980 6 6 2.8424 1.2715 2.2387 7 7 3.4580 0.1317 2.0061 8 14 2.6800 1.9053 3.9884 9 1 1.4223 1.3899 4.5867 10 1 3.8380 1.4398 4.7930 11 1 2.6503 3.3899 3.9764 12 6 2.1904 2.0973 -1.2664 13 6 3.5864 1.8700 -1.7864 14 7 3.9188 0.9057 -2.5580 15 6 5.2055 0.8278 -2.9495 16 6 5.8353 -0.1141 -3.7880 17 6 7.1665 -0.0171 -4.0576 18 6 7.9288 1.0099 -3.5134 19 9 9.2483 1.0918 -3.7915 20 6 7.3386 1.9455 -2.6909 21 6 5.9774 1.8602 -2.4053 22 16 4.9233 2.8630 -1.4136 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.8276 -0.3792 2.7433 29 1 1.4673 1.7281 -1.9937 30 1 2.0318 3.1635 -1.1053 31 1 5.2581 -0.9184 -4.2196 32 1 7.6354 -0.7464 -4.7015 33 1 7.9307 2.7434 -2.2676 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000432744664.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:25 Heat of formation + Delta-G solvation = 28.148620 kcal Electronic energy + Delta-G solvation = -19075.712899 eV Core-core repulsion = 15950.037255 eV Total energy + Delta-G solvation = -3125.675644 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.074 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.76880 -39.79931 -36.84592 -35.54927 -31.83863 -31.03385 -30.46514 -28.68721 -26.45132 -24.11231 -23.50916 -22.36930 -20.88127 -20.01418 -18.19078 -17.21723 -16.77039 -16.15731 -15.52233 -15.30893 -14.98096 -14.48072 -13.93028 -13.75259 -13.65419 -13.56940 -13.10050 -12.86625 -12.40740 -11.97545 -11.78936 -11.55830 -11.14973 -11.05831 -10.89813 -10.71222 -10.45633 -10.20438 -10.12883 -9.81265 -9.72050 -9.04099 -8.68211 -8.10610 -7.70728 -6.92137 -6.03716 -3.55051 0.77638 1.26324 1.79898 2.40593 2.70737 3.25298 3.33117 3.33708 3.90426 4.29879 4.40381 4.44955 4.82779 5.06229 5.12832 5.34270 5.42785 5.56606 5.77752 6.01248 6.05176 6.16930 6.23741 6.27948 6.32148 6.47499 6.57230 6.62180 6.83395 6.92848 7.16714 7.55953 7.65525 8.23585 8.28712 8.90821 9.51061 10.07378 10.94377 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.021424 B = 0.005397 C = 0.004883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.630032 B = 5186.649527 C = 5733.321490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.134 3.866 3 N -0.555 5.555 4 C -0.263 4.263 5 H 0.072 0.928 6 C 0.017 3.983 7 N -0.869 5.869 8 Si 0.905 3.095 9 H -0.283 1.283 10 H -0.289 1.289 11 H -0.274 1.274 12 C 0.198 3.802 13 C 0.116 3.884 14 N -0.491 5.491 15 C 0.095 3.905 16 C -0.049 4.049 17 C -0.141 4.141 18 C 0.084 3.916 19 F -0.142 7.142 20 C -0.097 4.097 21 C -0.186 4.186 22 S 0.110 5.890 23 H 0.037 0.963 24 H 0.050 0.950 25 H 0.035 0.965 26 H 0.031 0.969 27 H 0.098 0.902 28 H 0.260 0.740 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.138 0.862 32 H 0.139 0.861 33 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.131 2.139 -8.871 9.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.009 3.991 3 N -0.273 5.273 4 C -0.394 4.394 5 H 0.089 0.911 6 C -0.187 4.187 7 N -0.509 5.509 8 Si 0.733 3.267 9 H -0.209 1.209 10 H -0.215 1.215 11 H -0.199 1.199 12 C 0.068 3.932 13 C -0.170 4.170 14 N -0.206 5.206 15 C -0.028 4.028 16 C -0.069 4.069 17 C -0.163 4.163 18 C 0.061 3.939 19 F -0.120 7.120 20 C -0.121 4.121 21 C -0.306 4.306 22 S 0.368 5.632 23 H 0.056 0.944 24 H 0.069 0.931 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.116 0.884 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.155 0.845 32 H 0.156 0.844 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.841 2.562 -8.235 9.080 hybrid contribution 0.865 -0.607 0.474 1.158 sum 3.706 1.955 -7.761 8.819 Atomic orbital electron populations 1.22242 1.00037 0.99077 1.00601 1.21090 0.90229 0.85302 1.02496 1.44415 1.70483 1.12757 0.99660 1.19270 1.37021 0.94878 0.88262 0.91080 1.25285 0.95995 0.97590 0.99790 1.70011 1.34028 1.15455 1.31379 0.86262 0.77540 0.78946 0.83938 1.20904 1.21509 1.19856 1.20256 0.85511 0.98004 0.89475 1.29192 1.03471 0.92085 0.92290 1.66240 1.15445 1.22407 1.16532 1.19350 0.88411 0.95813 0.99265 1.20123 0.93236 0.97395 0.96195 1.20509 0.93980 0.98949 1.02888 1.17258 0.77902 0.97798 1.00898 1.91468 1.31928 1.96134 1.92496 1.20072 0.92512 0.99863 0.99662 1.23726 0.98748 1.03197 1.04971 1.84004 1.01418 1.30026 1.47746 0.94370 0.93096 0.94561 0.95009 0.88414 0.92989 0.90758 0.90980 0.84454 0.84363 0.84768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.07 10.24 37.16 0.38 -2.69 16 2 C 0.13 3.06 5.98 -4.04 -0.02 3.03 16 3 N -0.56 -12.86 2.43 -174.61 -0.42 -13.28 16 4 C -0.26 -6.57 9.49 -15.06 -0.14 -6.71 16 5 H 0.07 1.74 7.92 -52.48 -0.42 1.32 16 6 C 0.02 0.43 4.94 -17.43 -0.09 0.34 16 7 N -0.87 -23.77 11.33 55.49 0.63 -23.14 16 8 Si 0.90 20.31 29.61 -169.99 -5.03 15.28 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 12 C 0.20 3.96 6.24 -5.19 -0.03 3.93 16 13 C 0.12 2.38 6.87 -13.92 -0.10 2.28 16 14 N -0.49 -10.31 10.57 -9.09 -0.10 -10.41 16 15 C 0.10 1.83 7.00 -84.94 -0.59 1.24 16 16 C -0.05 -0.77 10.05 -39.29 -0.39 -1.16 16 17 C -0.14 -1.96 9.92 -40.05 -0.40 -2.35 16 18 C 0.08 1.26 7.30 -39.45 -0.29 0.98 16 19 F -0.14 -2.03 17.27 2.25 0.04 -1.99 16 20 C -0.10 -1.57 10.05 -39.31 -0.40 -1.96 16 21 C -0.19 -3.45 6.56 -38.54 -0.25 -3.70 16 22 S 0.11 2.09 23.11 -107.50 -2.48 -0.40 16 23 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 27 H 0.10 2.53 5.33 -51.93 -0.28 2.25 16 28 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 29 H 0.07 1.37 8.07 -51.93 -0.42 0.95 16 30 H 0.07 1.31 8.04 -51.93 -0.42 0.89 16 31 H 0.14 1.87 8.06 -52.49 -0.42 1.44 16 32 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 33 H 0.13 1.88 8.06 -52.48 -0.42 1.46 16 LS Contribution 304.61 15.07 4.59 4.59 Total: -1.00 -27.91 304.61 -8.72 -36.63 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -3.62 Total: -0.49 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: -2.32 Total: -6.78 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: 0.11 Total: -46.84 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.03 Total: 15.28 kcal Atomic # 16 Polarization: 2.09 SS G_CDS: -2.48 Total: -0.40 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -27.91 -8.72 -36.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432744664.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.781 kcal (2) G-P(sol) polarization free energy of solvation -27.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds