Wall clock time and date at job start Tue Mar 31 2020 00:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47389 * 2 1 4 4 C 1.36929 * 119.99709 * 93.45855 * 3 2 1 5 5 H 1.08005 * 119.99811 * 214.54270 * 4 3 2 6 6 C 1.38812 * 120.00350 * 34.27332 * 4 3 2 7 7 N 1.31615 * 119.99605 * 22.09703 * 6 4 3 8 8 Si 1.86802 * 120.00080 * 202.09073 * 6 4 3 9 9 H 1.48501 * 109.47004 * 90.00196 * 8 6 4 10 10 H 1.48501 * 109.47155 * 209.99976 * 8 6 4 11 11 H 1.48495 * 109.47366 * 330.00119 * 8 6 4 12 12 C 1.46501 * 119.99965 * 273.45961 * 3 2 1 13 13 C 1.50698 * 109.47161 * 270.00245 * 12 3 2 14 14 N 1.27896 * 124.23795 * 89.69600 * 13 12 3 15 15 C 1.34721 * 117.84379 * 179.77341 * 14 13 12 16 16 C 1.40959 * 129.65699 * 180.21893 * 15 14 13 17 17 C 1.36172 * 120.46065 * 180.32559 * 16 15 14 18 18 C 1.38988 * 120.74891 * 359.97438 * 17 16 15 19 19 F 1.35097 * 119.99138 * 180.02562 * 18 17 16 20 20 C 1.37845 * 120.01761 * 359.97438 * 18 17 16 21 21 C 1.39344 * 119.93597 * 0.02562 * 20 18 17 22 22 S 1.70650 * 124.23206 * 269.99888 * 13 12 3 23 23 H 1.09002 * 109.47481 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.47271 * 300.00256 * 1 2 3 25 25 H 1.09003 * 109.47217 * 59.99740 * 1 2 3 26 26 H 1.09006 * 109.47271 * 239.99744 * 2 1 3 27 27 H 1.09003 * 109.47217 * 120.00260 * 2 1 3 28 28 H 0.97009 * 119.99551 * 179.97438 * 7 6 4 29 29 H 1.09004 * 109.46861 * 29.99455 * 12 3 2 30 30 H 1.08993 * 109.47153 * 149.99851 * 12 3 2 31 31 H 1.08001 * 119.77354 * 0.31734 * 16 15 14 32 32 H 1.07997 * 119.62618 * 179.97438 * 17 16 15 33 33 H 1.08003 * 120.03690 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3141 2.0028 1.1837 5 1 2.1321 3.0612 1.2980 6 6 2.8424 1.2715 2.2387 7 7 3.4580 0.1317 2.0061 8 14 2.6800 1.9053 3.9884 9 1 1.4223 1.3899 4.5867 10 1 3.8380 1.4398 4.7930 11 1 2.6503 3.3899 3.9764 12 6 2.1904 2.0973 -1.2664 13 6 3.5864 1.8700 -1.7864 14 7 3.9188 0.9057 -2.5580 15 6 5.2055 0.8278 -2.9495 16 6 5.8353 -0.1141 -3.7880 17 6 7.1665 -0.0171 -4.0576 18 6 7.9288 1.0099 -3.5134 19 9 9.2483 1.0918 -3.7915 20 6 7.3386 1.9455 -2.6909 21 6 5.9774 1.8602 -2.4053 22 16 4.9233 2.8630 -1.4136 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.8276 -0.3792 2.7433 29 1 1.4673 1.7281 -1.9937 30 1 2.0318 3.1635 -1.1053 31 1 5.2581 -0.9184 -4.2196 32 1 7.6354 -0.7464 -4.7015 33 1 7.9307 2.7434 -2.2676 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000432744664.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:25 Heat of formation + Delta-G solvation = 13.754101 kcal Electronic energy + Delta-G solvation = -19076.337092 eV Core-core repulsion = 15950.037255 eV Total energy + Delta-G solvation = -3126.299837 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.074 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.97571 -41.20466 -38.39099 -37.11875 -33.65552 -32.31628 -32.02828 -30.22204 -28.06938 -25.77831 -24.95285 -23.76379 -22.45782 -21.59660 -19.55310 -18.78491 -18.33726 -17.53369 -16.91020 -16.74030 -16.48404 -16.12243 -15.58974 -15.22716 -15.06378 -15.01193 -14.48445 -14.17249 -14.05885 -13.42919 -13.29160 -13.26381 -12.78235 -12.68921 -12.42585 -12.40098 -11.97275 -11.83089 -11.80575 -11.48887 -11.15769 -10.68110 -10.46929 -9.51128 -9.09996 -8.75079 -7.90781 -5.48381 -0.60482 -0.00371 0.35665 0.89988 1.28842 1.47475 1.50614 1.57359 2.46501 2.56085 3.03869 3.15579 3.23625 3.57315 3.66182 3.93342 4.12253 4.20009 4.43579 4.54830 4.59368 4.75711 4.82476 4.90988 4.94124 4.96468 5.03351 5.18268 5.21910 5.50108 5.63732 5.67953 5.84836 6.37238 6.76850 7.05811 7.71345 8.24674 9.05822 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.021424 B = 0.005397 C = 0.004883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.630032 B = 5186.649527 C = 5733.321490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.137 3.863 3 N -0.572 5.572 4 C -0.265 4.265 5 H 0.073 0.927 6 C -0.030 4.030 7 N -0.909 5.909 8 Si 0.958 3.042 9 H -0.283 1.283 10 H -0.299 1.299 11 H -0.264 1.264 12 C 0.200 3.800 13 C 0.097 3.903 14 N -0.504 5.504 15 C 0.057 3.943 16 C -0.049 4.049 17 C -0.125 4.125 18 C 0.098 3.902 19 F -0.133 7.133 20 C -0.109 4.109 21 C -0.196 4.196 22 S 0.112 5.888 23 H 0.056 0.944 24 H 0.040 0.960 25 H 0.052 0.948 26 H 0.019 0.981 27 H 0.066 0.934 28 H 0.252 0.748 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.159 0.841 32 H 0.180 0.820 33 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.049 2.281 -10.478 11.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.012 3.988 3 N -0.291 5.291 4 C -0.396 4.396 5 H 0.090 0.910 6 C -0.229 4.229 7 N -0.552 5.552 8 Si 0.786 3.214 9 H -0.210 1.210 10 H -0.226 1.226 11 H -0.188 1.188 12 C 0.070 3.930 13 C -0.189 4.189 14 N -0.219 5.219 15 C -0.065 4.065 16 C -0.069 4.069 17 C -0.147 4.147 18 C 0.076 3.924 19 F -0.111 7.111 20 C -0.133 4.133 21 C -0.316 4.316 22 S 0.370 5.630 23 H 0.074 0.926 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.038 0.962 27 H 0.084 0.916 28 H 0.061 0.939 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.176 0.824 32 H 0.197 0.803 33 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 3.761 2.723 -9.867 10.905 hybrid contribution 0.787 -0.642 0.664 1.213 sum 4.547 2.081 -9.203 10.474 Atomic orbital electron populations 1.22069 0.97263 1.00386 1.00827 1.20936 0.92376 0.85245 1.00264 1.44381 1.71752 1.12612 1.00314 1.19426 1.35952 0.94840 0.89352 0.90967 1.25867 0.96415 0.97977 1.02634 1.70155 1.36464 1.17066 1.31471 0.85417 0.76750 0.78833 0.80392 1.20968 1.22588 1.18783 1.20262 0.85735 0.98494 0.88537 1.29009 1.04032 0.92537 0.93365 1.66225 1.16888 1.22283 1.16497 1.19814 0.88140 0.97484 1.01015 1.20469 0.94132 0.97064 0.95256 1.20922 0.93026 0.98787 1.01965 1.17391 0.78197 0.97289 0.99570 1.91503 1.31363 1.96030 1.92229 1.20306 0.91745 1.01010 1.00202 1.23864 0.99667 1.02914 1.05160 1.83807 1.01261 1.30046 1.47889 0.92552 0.94077 0.92929 0.96233 0.91603 0.93906 0.89477 0.89462 0.82366 0.80257 0.83014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.52 10.24 71.98 0.74 -4.78 16 2 C 0.14 6.37 5.98 86.38 0.52 6.89 16 3 N -0.57 -26.71 2.43 -706.34 -1.72 -28.43 16 4 C -0.26 -13.36 9.49 84.03 0.80 -12.56 16 5 H 0.07 3.54 7.92 -2.91 -0.02 3.51 16 6 C -0.03 -1.58 4.94 84.86 0.42 -1.16 16 7 N -0.91 -51.48 11.33 21.65 0.25 -51.23 16 8 Si 0.96 42.55 29.61 68.60 2.03 44.58 16 9 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 10 H -0.30 -13.61 7.11 99.48 0.71 -12.91 16 11 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 12 C 0.20 7.94 6.24 85.63 0.53 8.48 16 13 C 0.10 4.00 6.87 88.68 0.61 4.61 16 14 N -0.50 -21.03 10.57 -182.50 -1.93 -22.96 16 15 C 0.06 2.15 7.00 39.77 0.28 2.43 16 16 C -0.05 -1.40 10.05 22.46 0.23 -1.17 16 17 C -0.13 -2.97 9.92 21.97 0.22 -2.76 16 18 C 0.10 2.61 7.30 22.36 0.16 2.78 16 19 F -0.13 -3.30 17.27 44.97 0.78 -2.52 16 20 C -0.11 -3.27 10.05 22.44 0.23 -3.04 16 21 C -0.20 -7.07 6.56 22.94 0.15 -6.92 16 22 S 0.11 4.24 23.11 -56.49 -1.31 2.94 16 23 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 25 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.02 0.92 8.10 -2.38 -0.02 0.90 16 27 H 0.07 3.54 5.33 -2.39 -0.01 3.52 16 28 H 0.25 13.94 8.31 -92.70 -0.77 13.17 16 29 H 0.09 3.16 8.07 -2.38 -0.02 3.14 16 30 H 0.09 3.13 8.04 -2.39 -0.02 3.11 16 31 H 0.16 3.83 8.06 -2.91 -0.02 3.81 16 32 H 0.18 2.81 8.06 -2.91 -0.02 2.78 16 33 H 0.15 3.91 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -60.92 304.61 4.10 -56.82 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: 1.13 Total: 8.02 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: 4.87 Total: -7.22 kcal Atomic # 7 Polarization: -99.22 SS G_CDS: -3.40 Total: -102.62 kcal Atomic # 9 Polarization: -3.30 SS G_CDS: 0.78 Total: -2.52 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Atomic # 16 Polarization: 4.24 SS G_CDS: -1.31 Total: 2.94 kcal Total: -60.92 4.10 -56.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432744664.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.569 kcal (2) G-P(sol) polarization free energy of solvation -60.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds