Wall clock time and date at job start Tue Mar 31 2020 02:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46495 * 119.99889 * 2 1 4 4 C 1.50703 * 109.47395 * 84.99517 * 3 2 1 5 5 H 1.07994 * 119.99603 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99838 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00380 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99848 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47297 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47261 * 239.99776 * 8 6 4 11 11 H 1.48500 * 109.47454 * 119.99769 * 8 6 4 12 12 S 1.65599 * 119.99923 * 179.97438 * 2 1 3 13 13 O 1.42105 * 106.40178 * 23.54373 * 12 2 1 14 14 O 1.42104 * 106.40059 * 156.46288 * 12 2 1 15 15 N 1.65599 * 107.21725 * 270.00257 * 12 2 1 16 16 C 1.47419 * 125.64944 * 269.68996 * 15 12 2 17 17 C 1.54694 * 104.94508 * 204.07662 * 16 15 12 18 18 H 1.09002 * 110.84889 * 81.33149 * 17 16 15 19 19 O 1.42894 * 111.10834 * 205.11062 * 17 16 15 20 20 C 1.55159 * 101.67535 * 323.28182 * 17 16 15 21 21 H 1.09006 * 110.71925 * 276.96868 * 20 17 16 22 22 O 1.42901 * 110.72291 * 153.69954 * 20 17 16 23 23 C 1.47031 * 125.64563 * 90.00528 * 15 12 2 24 24 H 1.09000 * 109.46741 * 90.00241 * 1 2 3 25 25 H 1.08998 * 109.47043 * 210.00109 * 1 2 3 26 26 H 1.08997 * 109.47364 * 330.00633 * 1 2 3 27 27 H 1.09005 * 109.47411 * 324.99451 * 3 2 1 28 28 H 1.08998 * 109.46900 * 204.99530 * 3 2 1 29 29 H 0.97001 * 119.99667 * 0.02562 * 7 6 4 30 30 H 1.08999 * 110.37091 * 323.00369 * 16 15 12 31 31 H 1.08994 * 110.36639 * 85.33353 * 16 15 12 32 32 H 0.96704 * 113.99859 * 292.36862 * 19 17 16 33 33 H 0.96698 * 113.99786 * 185.02398 * 22 20 17 34 34 H 1.09000 * 109.88042 * 298.31412 * 23 15 12 35 35 H 1.09000 * 109.88283 * 59.48650 * 23 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7658 1.4154 5 1 1.9281 1.1940 2.2331 6 6 2.9996 2.9510 1.6662 7 7 3.5024 3.6475 0.6704 8 14 3.1785 3.5668 3.4207 9 1 2.5310 2.6070 4.3507 10 1 2.5268 4.8950 3.5480 11 1 4.6196 3.6881 3.7582 12 16 2.2930 -1.4341 0.0006 13 8 1.4113 -2.4067 -0.5435 14 8 3.5760 -1.1570 -0.5439 15 7 2.5380 -1.8580 1.5826 16 6 3.7057 -1.4843 2.4013 17 6 3.7833 -2.5671 3.5033 18 1 4.2723 -3.4667 3.1295 19 8 4.4491 -2.0711 4.6662 20 6 2.2815 -2.8297 3.7918 21 1 1.8871 -2.0887 4.4872 22 8 2.0873 -4.1524 4.2965 23 6 1.6301 -2.6748 2.4014 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5137 27 1 1.6502 2.0043 -0.5895 28 1 3.1858 1.1176 -0.4342 29 1 3.4098 3.3275 -0.2406 30 1 4.6120 -1.4931 1.7958 31 1 3.5566 -0.5015 2.8484 32 1 5.3903 -1.8922 4.5343 33 1 1.1592 -4.3937 4.4206 34 1 0.6663 -2.1747 2.4971 35 1 1.4978 -3.6547 1.9427 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000434774036.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:44 Heat of formation + Delta-G solvation = -198.249364 kcal Electronic energy + Delta-G solvation = -21683.920774 eV Core-core repulsion = 18228.746068 eV Total energy + Delta-G solvation = -3455.174706 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.097 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.33403 -38.50272 -37.46853 -37.07752 -37.07091 -36.44210 -34.68760 -30.18754 -29.50960 -29.22388 -26.65237 -24.48995 -23.79509 -22.16182 -20.25354 -19.29016 -19.04770 -18.97539 -18.30022 -17.61768 -17.32190 -16.43745 -15.95297 -15.67113 -15.57770 -15.28417 -14.90682 -14.64868 -14.22665 -14.04763 -13.96828 -13.62667 -13.52025 -13.42091 -13.33423 -13.23429 -13.17592 -12.98700 -12.43704 -12.34215 -11.90584 -11.55808 -11.33688 -11.31174 -11.10362 -10.57379 -10.13365 -9.79523 -8.63636 -6.39804 -0.53852 1.55992 1.63150 1.75448 1.79689 2.38125 2.56562 2.89105 3.03851 3.14628 3.17147 3.59266 3.87559 3.90597 4.00765 4.16295 4.36337 4.38070 4.55825 4.62161 4.64628 4.81096 4.85564 4.89165 4.94728 4.99577 5.17430 5.30537 5.69131 5.84382 6.23853 6.51738 6.76473 6.81163 7.40571 8.72971 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.014414 B = 0.008916 C = 0.006431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.058880 B = 3139.492386 C = 4352.670974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.999 5.999 3 C 0.244 3.756 4 C -0.612 4.612 5 H 0.064 0.936 6 C -0.028 4.028 7 N -0.936 5.936 8 Si 1.115 2.885 9 H -0.265 1.265 10 H -0.283 1.283 11 H -0.282 1.282 12 S 2.816 3.184 13 O -0.995 6.995 14 O -1.009 7.009 15 N -1.010 6.010 16 C 0.089 3.911 17 C 0.109 3.891 18 H 0.089 0.911 19 O -0.563 6.563 20 C 0.112 3.888 21 H 0.087 0.913 22 O -0.563 6.563 23 C 0.089 3.911 24 H 0.058 0.942 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.016 0.984 28 H 0.013 0.987 29 H 0.257 0.743 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.401 0.599 33 H 0.402 0.598 34 H 0.087 0.913 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.587 -12.574 7.345 15.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.840 5.840 3 C 0.119 3.881 4 C -0.651 4.651 5 H 0.083 0.917 6 C -0.227 4.227 7 N -0.573 5.573 8 Si 0.937 3.063 9 H -0.190 1.190 10 H -0.209 1.209 11 H -0.207 1.207 12 S 2.826 3.174 13 O -0.979 6.979 14 O -0.994 6.994 15 N -0.852 5.852 16 C -0.037 4.037 17 C 0.048 3.952 18 H 0.107 0.893 19 O -0.371 6.371 20 C 0.051 3.949 21 H 0.105 0.895 22 O -0.371 6.371 23 C -0.037 4.037 24 H 0.077 0.923 25 H 0.099 0.901 26 H 0.092 0.908 27 H 0.034 0.966 28 H 0.031 0.969 29 H 0.067 0.933 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.252 0.748 33 H 0.254 0.746 34 H 0.106 0.894 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.690 -11.896 7.624 14.604 hybrid contribution -0.671 -0.476 -1.447 1.664 sum -4.361 -12.372 6.177 14.500 Atomic orbital electron populations 1.21494 0.77719 1.03488 1.02102 1.57509 1.15819 1.21780 1.88874 1.18921 0.90654 0.81109 0.97368 1.22613 1.39630 1.09672 0.93173 0.91736 1.27179 0.92676 0.94234 1.08594 1.70859 1.44815 1.41077 1.00542 0.82961 0.77148 0.76042 0.70161 1.18985 1.20855 1.20744 1.00699 0.72132 0.72161 0.72410 1.93531 1.67231 1.60044 1.77083 1.93521 1.42777 1.85724 1.77368 1.58621 1.30929 1.65691 1.29965 1.22688 0.88303 0.99668 0.93074 1.22733 0.93214 0.94665 0.84624 0.89334 1.86456 1.28861 1.87548 1.34211 1.22583 0.93862 0.85698 0.92746 0.89511 1.86495 1.33651 1.30095 1.86886 1.22635 0.93511 0.96168 0.91372 0.92304 0.90140 0.90793 0.96571 0.96863 0.93335 0.90098 0.90836 0.74766 0.74623 0.89437 0.89218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.15 10.31 127.77 1.32 4.46 16 2 N -1.00 -40.63 3.23 -543.22 -1.75 -42.38 16 3 C 0.24 12.08 4.72 85.63 0.40 12.48 16 4 C -0.61 -31.50 9.38 25.60 0.24 -31.26 16 5 H 0.06 3.19 7.81 -2.91 -0.02 3.17 16 6 C -0.03 -1.50 5.46 84.65 0.46 -1.04 16 7 N -0.94 -55.14 13.65 21.45 0.29 -54.85 16 8 Si 1.11 47.41 29.90 68.60 2.05 49.46 16 9 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 10 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 11 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 12 S 2.82 110.30 6.31 -56.49 -0.36 109.94 16 13 O -0.99 -38.79 16.79 -128.00 -2.15 -40.94 16 14 O -1.01 -47.04 16.01 -128.00 -2.05 -49.09 16 15 N -1.01 -32.66 3.76 -506.83 -1.90 -34.56 16 16 C 0.09 2.78 6.83 86.78 0.59 3.37 16 17 C 0.11 2.74 4.14 31.91 0.13 2.87 16 18 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 19 O -0.56 -13.62 13.47 -148.98 -2.01 -15.62 16 20 C 0.11 2.56 4.07 31.78 0.13 2.68 16 21 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 22 O -0.56 -11.11 13.39 -148.98 -2.00 -13.11 16 23 C 0.09 2.15 6.76 86.73 0.59 2.74 16 24 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.08 2.15 7.79 -2.39 -0.02 2.13 16 26 H 0.07 2.39 8.07 -2.39 -0.02 2.37 16 27 H 0.02 0.84 7.98 -2.38 -0.02 0.82 16 28 H 0.01 0.74 6.78 -2.39 -0.02 0.72 16 29 H 0.26 15.41 7.22 -92.71 -0.67 14.74 16 30 H 0.08 2.59 7.78 -2.39 -0.02 2.57 16 31 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 32 H 0.40 6.30 9.12 -74.05 -0.68 5.62 16 33 H 0.40 3.91 9.11 -74.06 -0.67 3.24 16 34 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.09 2.00 8.06 -2.39 -0.02 1.98 16 Total: -1.00 -72.89 309.94 -6.14 -79.03 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -0.13 Total: 15.80 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: 3.86 Total: -3.68 kcal Atomic # 7 Polarization: -128.42 SS G_CDS: -3.36 Total: -131.79 kcal Atomic # 8 Polarization: -110.56 SS G_CDS: -8.20 Total: -118.76 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.05 Total: 49.46 kcal Atomic # 16 Polarization: 110.30 SS G_CDS: -0.36 Total: 109.94 kcal Total: -72.89 -6.14 -79.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000434774036.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.224 kcal (2) G-P(sol) polarization free energy of solvation -72.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds