Wall clock time and date at job start Tue Mar 31 2020 02:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46500 * 119.99863 * 2 1 4 4 C 1.50696 * 109.47324 * 274.99989 * 3 2 1 5 5 H 1.07999 * 119.99822 * 0.02562 * 4 3 2 6 6 C 1.37884 * 120.00126 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99707 * 180.02562 * 6 4 3 8 8 Si 1.86796 * 119.99956 * 0.27447 * 6 4 3 9 9 H 1.48503 * 109.47407 * 269.72718 * 8 6 4 10 10 H 1.48505 * 109.47281 * 29.72474 * 8 6 4 11 11 H 1.48501 * 109.47274 * 149.72572 * 8 6 4 12 12 S 1.65599 * 120.00016 * 179.97438 * 2 1 3 13 13 O 1.42096 * 106.40222 * 23.54307 * 12 2 1 14 14 O 1.42103 * 106.39832 * 156.45939 * 12 2 1 15 15 N 1.65600 * 107.21855 * 269.99840 * 12 2 1 16 16 C 1.47017 * 125.64959 * 269.68988 * 15 12 2 17 17 C 1.54312 * 107.27516 * 180.96929 * 16 15 12 18 18 H 1.08995 * 110.93237 * 264.11401 * 17 16 15 19 19 O 1.42900 * 110.74130 * 140.85824 * 17 16 15 20 20 C 1.55156 * 102.86324 * 22.53056 * 17 16 15 21 21 H 1.09004 * 111.00498 * 82.37864 * 20 17 16 22 22 O 1.42905 * 111.00663 * 206.22841 * 20 17 16 23 23 C 1.47417 * 125.64537 * 90.00635 * 15 12 2 24 24 H 1.08997 * 109.46948 * 89.99793 * 1 2 3 25 25 H 1.08998 * 109.47196 * 210.00081 * 1 2 3 26 26 H 1.08998 * 109.47387 * 329.99939 * 1 2 3 27 27 H 1.08996 * 109.47197 * 154.99728 * 3 2 1 28 28 H 1.09004 * 109.46923 * 35.00424 * 3 2 1 29 29 H 0.97005 * 119.99656 * 179.97438 * 7 6 4 30 30 H 1.08997 * 109.88278 * 300.51912 * 16 15 12 31 31 H 1.09000 * 109.88471 * 61.68316 * 16 15 12 32 32 H 0.96697 * 114.00517 * 66.56634 * 19 17 16 33 33 H 0.96693 * 114.00029 * 173.65021 * 22 20 17 34 34 H 1.09010 * 110.36539 * 274.66930 * 23 15 12 35 35 H 1.09005 * 110.37253 * 36.98762 * 23 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7657 -1.4154 5 1 1.9282 1.1939 -2.2331 6 6 3.0006 2.9505 -1.6664 7 7 3.1257 3.3844 -2.9016 8 14 3.7220 3.9356 -0.2527 9 1 2.7089 4.8999 0.2464 10 1 4.1112 3.0142 0.8449 11 1 4.9193 4.6760 -0.7255 12 16 2.2930 -1.4341 0.0006 13 8 1.4114 -2.4067 -0.5434 14 8 3.5759 -1.1569 -0.5440 15 7 2.5381 -1.8579 1.5826 16 6 3.7026 -1.4852 2.3990 17 6 3.5088 -2.1216 3.7913 18 1 3.0651 -1.4092 4.4867 19 8 4.7498 -2.6153 4.2993 20 6 2.5297 -3.2904 3.5036 21 1 3.0633 -4.1640 3.1292 22 8 1.7673 -3.6182 4.6670 23 6 1.6279 -2.6769 2.4036 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 3.1857 1.1178 0.4343 28 1 1.6501 2.0043 0.5895 29 1 3.5892 4.2180 -3.0781 30 1 4.6147 -1.8656 1.9391 31 1 3.7572 -0.4007 2.4936 32 1 5.3973 -1.9244 4.4956 33 1 1.0753 -4.2753 4.5115 34 1 0.8551 -2.0519 2.8514 35 1 1.1772 -3.4644 1.7996 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000434774038.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:49 Heat of formation + Delta-G solvation = -154.821806 kcal Electronic energy + Delta-G solvation = -21294.442695 eV Core-core repulsion = 17841.151149 eV Total energy + Delta-G solvation = -3453.291546 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.097 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.47242 -36.82006 -36.31819 -35.71148 -35.55099 -35.32074 -32.43569 -29.23800 -28.56824 -28.36359 -25.24803 -22.90562 -21.95966 -21.31167 -18.83909 -18.31431 -17.60598 -17.08719 -16.95008 -16.53086 -16.01633 -15.16535 -14.95708 -14.49106 -14.08026 -13.83666 -13.76417 -13.11341 -13.10958 -12.69478 -12.63726 -12.47874 -12.44159 -11.94721 -11.88887 -11.59270 -11.39673 -11.37486 -10.74920 -10.67587 -10.61801 -10.49460 -10.32347 -10.26096 -9.61165 -9.09910 -8.64138 -8.20330 -6.12558 -4.12269 0.90961 3.19104 3.21520 3.27838 3.30977 3.59374 3.84667 4.09124 4.11665 4.33338 4.64039 4.79192 4.86217 5.01444 5.13339 5.17229 5.29402 5.37853 5.53988 5.60937 5.74283 5.90457 5.92172 6.12184 6.26891 6.37567 6.62390 6.97767 7.28557 7.29702 7.35491 7.52133 8.44076 8.92116 9.45857 11.01063 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.022405 B = 0.006139 C = 0.005422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.428153 B = 4559.824079 C = 5163.069901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.990 5.990 3 C 0.228 3.772 4 C -0.533 4.533 5 H 0.078 0.922 6 C 0.073 3.927 7 N -0.894 5.894 8 Si 0.874 3.126 9 H -0.275 1.275 10 H -0.265 1.265 11 H -0.282 1.282 12 S 2.794 3.206 13 O -0.984 6.984 14 O -0.952 6.952 15 N -1.018 6.018 16 C 0.091 3.909 17 C 0.104 3.896 18 H 0.084 0.916 19 O -0.555 6.555 20 C 0.102 3.898 21 H 0.084 0.916 22 O -0.554 6.554 23 C 0.087 3.913 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.067 0.933 27 H 0.032 0.968 28 H 0.029 0.971 29 H 0.265 0.735 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.384 0.616 33 H 0.383 0.617 34 H 0.077 0.923 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.759 -10.483 15.664 19.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.832 5.832 3 C 0.104 3.896 4 C -0.572 4.572 5 H 0.096 0.904 6 C -0.130 4.130 7 N -0.532 5.532 8 Si 0.701 3.299 9 H -0.200 1.200 10 H -0.190 1.190 11 H -0.208 1.208 12 S 2.803 3.197 13 O -0.968 6.968 14 O -0.935 6.935 15 N -0.858 5.858 16 C -0.036 4.036 17 C 0.043 3.957 18 H 0.101 0.899 19 O -0.361 6.361 20 C 0.041 3.959 21 H 0.102 0.898 22 O -0.360 6.360 23 C -0.039 4.039 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.050 0.950 28 H 0.047 0.953 29 H 0.075 0.925 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.232 0.768 33 H 0.231 0.769 34 H 0.095 0.905 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.309 -10.925 14.908 18.626 hybrid contribution 0.141 1.151 0.614 1.312 sum -2.168 -9.774 15.523 18.471 Atomic orbital electron populations 1.21252 0.79467 1.01172 1.02007 1.57515 1.14576 1.22708 1.88423 1.19476 0.90824 0.80593 0.98690 1.21358 1.36914 1.07141 0.91802 0.90413 1.24879 0.95339 0.97186 0.95580 1.69896 1.42483 1.21913 1.18876 0.86890 0.79411 0.80613 0.82977 1.20033 1.19024 1.20772 1.01745 0.73531 0.72677 0.71732 1.93544 1.67369 1.60252 1.75673 1.93639 1.40486 1.84778 1.74637 1.59327 1.29570 1.65851 1.31043 1.22401 0.89704 1.00460 0.91001 1.22728 0.84849 0.94714 0.93362 0.89857 1.86516 1.25462 1.37834 1.86244 1.22897 0.90963 0.97161 0.84892 0.89785 1.86511 1.51367 1.64737 1.33344 1.22657 0.93118 0.95174 0.92972 0.92563 0.92836 0.91397 0.95032 0.95297 0.92458 0.89677 0.90587 0.76755 0.76886 0.90522 0.89222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.76 10.33 59.85 0.62 2.38 16 2 N -0.99 -19.74 3.23 -123.06 -0.40 -20.13 16 3 C 0.23 5.25 4.19 -5.20 -0.02 5.23 16 4 C -0.53 -15.10 9.94 -34.44 -0.34 -15.44 16 5 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 6 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 7 N -0.89 -27.32 13.96 55.43 0.77 -26.54 16 8 Si 0.87 20.73 27.47 -169.99 -4.67 16.06 16 9 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.27 -5.89 6.53 56.52 0.37 -5.52 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 S 2.79 54.08 6.26 -107.50 -0.67 53.41 16 13 O -0.98 -19.96 16.53 -57.17 -0.95 -20.90 16 14 O -0.95 -22.22 16.69 -57.17 -0.95 -23.18 16 15 N -1.02 -14.78 3.76 -111.43 -0.42 -15.19 16 16 C 0.09 1.16 6.76 -3.07 -0.02 1.14 16 17 C 0.10 1.13 4.07 -24.90 -0.10 1.03 16 18 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 19 O -0.56 -5.83 13.39 -35.23 -0.47 -6.30 16 20 C 0.10 1.07 4.15 -24.58 -0.10 0.96 16 21 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 22 O -0.55 -5.25 13.47 -35.23 -0.47 -5.72 16 23 C 0.09 0.97 6.84 -2.53 -0.02 0.96 16 24 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.05 0.71 7.79 -51.93 -0.40 0.31 16 26 H 0.07 0.99 7.94 -51.93 -0.41 0.58 16 27 H 0.03 0.73 6.65 -51.93 -0.35 0.39 16 28 H 0.03 0.62 7.40 -51.93 -0.38 0.24 16 29 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.08 1.12 8.06 -51.93 -0.42 0.70 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.38 2.35 9.12 45.56 0.42 2.76 16 33 H 0.38 1.84 9.11 45.56 0.42 2.25 16 34 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 35 H 0.09 0.94 7.78 -51.93 -0.40 0.53 16 LS Contribution 308.17 15.07 4.64 4.64 Total: -1.00 -37.13 308.17 -6.91 -44.04 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -3.24 Total: 1.56 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -0.08 Total: -1.74 kcal Atomic # 7 Polarization: -61.83 SS G_CDS: -0.04 Total: -61.87 kcal Atomic # 8 Polarization: -53.26 SS G_CDS: -2.85 Total: -56.11 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.67 Total: 16.06 kcal Atomic # 16 Polarization: 54.08 SS G_CDS: -0.67 Total: 53.41 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -37.13 -6.91 -44.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000434774038.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.779 kcal (2) G-P(sol) polarization free energy of solvation -37.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds