Wall clock time and date at job start Tue Mar 31 2020 02:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46500 * 119.99863 * 2 1 4 4 C 1.50696 * 109.47324 * 274.99989 * 3 2 1 5 5 H 1.07999 * 119.99822 * 0.02562 * 4 3 2 6 6 C 1.37884 * 120.00126 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99707 * 180.02562 * 6 4 3 8 8 Si 1.86796 * 119.99956 * 0.27447 * 6 4 3 9 9 H 1.48503 * 109.47407 * 269.72718 * 8 6 4 10 10 H 1.48505 * 109.47281 * 29.72474 * 8 6 4 11 11 H 1.48501 * 109.47274 * 149.72572 * 8 6 4 12 12 S 1.65599 * 120.00016 * 179.97438 * 2 1 3 13 13 O 1.42096 * 106.40222 * 23.54307 * 12 2 1 14 14 O 1.42103 * 106.39832 * 156.45939 * 12 2 1 15 15 N 1.65600 * 107.21855 * 269.99840 * 12 2 1 16 16 C 1.47017 * 125.64959 * 269.68988 * 15 12 2 17 17 C 1.54312 * 107.27516 * 180.96929 * 16 15 12 18 18 H 1.08995 * 110.93237 * 264.11401 * 17 16 15 19 19 O 1.42900 * 110.74130 * 140.85824 * 17 16 15 20 20 C 1.55156 * 102.86324 * 22.53056 * 17 16 15 21 21 H 1.09004 * 111.00498 * 82.37864 * 20 17 16 22 22 O 1.42905 * 111.00663 * 206.22841 * 20 17 16 23 23 C 1.47417 * 125.64537 * 90.00635 * 15 12 2 24 24 H 1.08997 * 109.46948 * 89.99793 * 1 2 3 25 25 H 1.08998 * 109.47196 * 210.00081 * 1 2 3 26 26 H 1.08998 * 109.47387 * 329.99939 * 1 2 3 27 27 H 1.08996 * 109.47197 * 154.99728 * 3 2 1 28 28 H 1.09004 * 109.46923 * 35.00424 * 3 2 1 29 29 H 0.97005 * 119.99656 * 179.97438 * 7 6 4 30 30 H 1.08997 * 109.88278 * 300.51912 * 16 15 12 31 31 H 1.09000 * 109.88471 * 61.68316 * 16 15 12 32 32 H 0.96697 * 114.00517 * 66.56634 * 19 17 16 33 33 H 0.96693 * 114.00029 * 173.65021 * 22 20 17 34 34 H 1.09010 * 110.36539 * 274.66930 * 23 15 12 35 35 H 1.09005 * 110.37253 * 36.98762 * 23 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7657 -1.4154 5 1 1.9282 1.1939 -2.2331 6 6 3.0006 2.9505 -1.6664 7 7 3.1257 3.3844 -2.9016 8 14 3.7220 3.9356 -0.2527 9 1 2.7089 4.8999 0.2464 10 1 4.1112 3.0142 0.8449 11 1 4.9193 4.6760 -0.7255 12 16 2.2930 -1.4341 0.0006 13 8 1.4114 -2.4067 -0.5434 14 8 3.5759 -1.1569 -0.5440 15 7 2.5381 -1.8579 1.5826 16 6 3.7026 -1.4852 2.3990 17 6 3.5088 -2.1216 3.7913 18 1 3.0651 -1.4092 4.4867 19 8 4.7498 -2.6153 4.2993 20 6 2.5297 -3.2904 3.5036 21 1 3.0633 -4.1640 3.1292 22 8 1.7673 -3.6182 4.6670 23 6 1.6279 -2.6769 2.4036 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 3.1857 1.1178 0.4343 28 1 1.6501 2.0043 0.5895 29 1 3.5892 4.2180 -3.0781 30 1 4.6147 -1.8656 1.9391 31 1 3.7572 -0.4007 2.4936 32 1 5.3973 -1.9244 4.4956 33 1 1.0753 -4.2753 4.5115 34 1 0.8551 -2.0519 2.8514 35 1 1.1772 -3.4644 1.7996 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000434774038.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:49 Heat of formation + Delta-G solvation = -190.950946 kcal Electronic energy + Delta-G solvation = -21296.009373 eV Core-core repulsion = 17841.151149 eV Total energy + Delta-G solvation = -3454.858223 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.097 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.33624 -38.43498 -37.34385 -37.06408 -36.96729 -36.44871 -34.53181 -30.34128 -30.16671 -29.36711 -26.84199 -24.05680 -23.66393 -22.15731 -20.16756 -19.25057 -19.13103 -18.77413 -18.36096 -17.58055 -17.38669 -16.49208 -16.17460 -15.88230 -15.40007 -15.13994 -14.66067 -14.60434 -14.43524 -14.23526 -13.98311 -13.62831 -13.48001 -13.33827 -13.29372 -13.17782 -13.14627 -13.07232 -12.36813 -12.29476 -12.03586 -11.73600 -11.55363 -11.28133 -11.12924 -10.79153 -10.18892 -9.83939 -8.30243 -6.36953 -0.57396 1.35656 1.40640 1.49642 1.88590 2.34721 2.44117 2.90836 3.02675 3.06988 3.15411 3.60610 3.87421 3.93421 4.02263 4.16780 4.36616 4.38964 4.59487 4.65422 4.70662 4.74558 4.78165 4.87439 4.96086 5.01103 5.18310 5.30669 5.46156 5.72490 6.28016 6.66077 6.78534 6.82120 7.26181 8.87578 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.022405 B = 0.006139 C = 0.005422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.428153 B = 4559.824079 C = 5163.069901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.999 5.999 3 C 0.234 3.766 4 C -0.547 4.547 5 H 0.025 0.975 6 C 0.005 3.995 7 N -0.949 5.949 8 Si 0.947 3.053 9 H -0.253 1.253 10 H -0.236 1.236 11 H -0.284 1.284 12 S 2.809 3.191 13 O -1.000 7.000 14 O -1.001 7.001 15 N -1.013 6.013 16 C 0.083 3.917 17 C 0.111 3.889 18 H 0.098 0.902 19 O -0.568 6.568 20 C 0.107 3.893 21 H 0.081 0.919 22 O -0.561 6.561 23 C 0.083 3.917 24 H 0.036 0.964 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.037 0.963 28 H 0.057 0.943 29 H 0.268 0.732 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.402 0.598 33 H 0.403 0.597 34 H 0.098 0.902 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.118 -10.463 19.303 22.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.840 5.840 3 C 0.109 3.891 4 C -0.586 4.586 5 H 0.043 0.957 6 C -0.192 4.192 7 N -0.589 5.589 8 Si 0.769 3.231 9 H -0.178 1.178 10 H -0.159 1.159 11 H -0.210 1.210 12 S 2.819 3.181 13 O -0.984 6.984 14 O -0.985 6.985 15 N -0.856 5.856 16 C -0.042 4.042 17 C 0.050 3.950 18 H 0.116 0.884 19 O -0.376 6.376 20 C 0.046 3.954 21 H 0.098 0.902 22 O -0.369 6.369 23 C -0.042 4.042 24 H 0.054 0.946 25 H 0.105 0.895 26 H 0.108 0.892 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.253 0.747 33 H 0.254 0.746 34 H 0.116 0.884 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.706 -10.939 18.555 21.709 hybrid contribution 0.199 1.016 -0.547 1.171 sum -2.507 -9.923 18.008 20.713 Atomic orbital electron populations 1.21507 0.77575 1.03966 1.01689 1.57468 1.15960 1.21638 1.88932 1.19276 0.92017 0.82348 0.95422 1.21703 1.36526 1.06945 0.93423 0.95696 1.25994 0.95698 0.98619 0.98921 1.70083 1.44050 1.22846 1.21960 0.85730 0.78668 0.79265 0.79463 1.17757 1.15913 1.21015 1.00952 0.72310 0.72350 0.72494 1.93510 1.67499 1.60537 1.76899 1.93571 1.42815 1.85409 1.76704 1.58793 1.30931 1.65927 1.29989 1.22621 0.88557 1.01201 0.91867 1.22678 0.85205 0.94963 0.92114 0.88390 1.86486 1.25915 1.39199 1.85994 1.22754 0.90838 0.96911 0.84890 0.90162 1.86478 1.52096 1.65649 1.32681 1.22950 0.93154 0.95301 0.92818 0.94557 0.89451 0.89204 0.94528 0.92483 0.92310 0.90641 0.89879 0.74675 0.74565 0.88407 0.88671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.06 10.33 127.77 1.32 4.38 16 2 N -1.00 -38.88 3.23 -543.25 -1.75 -40.63 16 3 C 0.23 10.50 4.19 85.63 0.36 10.86 16 4 C -0.55 -31.70 9.94 25.60 0.25 -31.45 16 5 H 0.02 1.64 8.06 -2.91 -0.02 1.62 16 6 C 0.01 0.31 5.47 84.66 0.46 0.78 16 7 N -0.95 -60.02 13.96 21.45 0.30 -59.72 16 8 Si 0.95 41.80 27.47 68.60 1.88 43.69 16 9 H -0.25 -10.28 7.11 99.48 0.71 -9.58 16 10 H -0.24 -9.23 6.53 99.48 0.65 -8.58 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 12 S 2.81 107.62 6.26 -56.49 -0.35 107.26 16 13 O -1.00 -40.26 16.53 -128.00 -2.12 -42.38 16 14 O -1.00 -47.66 16.69 -128.00 -2.14 -49.79 16 15 N -1.01 -27.44 3.76 -506.46 -1.90 -29.34 16 16 C 0.08 1.96 6.76 86.73 0.59 2.54 16 17 C 0.11 2.07 4.07 31.78 0.13 2.20 16 18 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 19 O -0.57 -10.39 13.39 -148.98 -2.00 -12.38 16 20 C 0.11 1.93 4.15 31.99 0.13 2.06 16 21 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 22 O -0.56 -8.62 13.47 -148.98 -2.01 -10.63 16 23 C 0.08 1.60 6.84 86.86 0.59 2.19 16 24 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.09 2.11 7.79 -2.39 -0.02 2.09 16 26 H 0.09 2.39 7.94 -2.39 -0.02 2.37 16 27 H 0.04 1.62 6.65 -2.39 -0.02 1.60 16 28 H 0.06 2.26 7.40 -2.39 -0.02 2.24 16 29 H 0.27 15.68 8.31 -92.70 -0.77 14.91 16 30 H 0.08 1.90 8.06 -2.39 -0.02 1.88 16 31 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.40 3.82 9.12 -74.06 -0.68 3.14 16 33 H 0.40 2.44 9.11 -74.06 -0.67 1.77 16 34 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 35 H 0.09 1.74 7.78 -2.38 -0.02 1.72 16 Total: -1.00 -82.94 308.17 -6.53 -89.47 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -0.29 Total: 10.90 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: 3.84 Total: -6.44 kcal Atomic # 7 Polarization: -126.33 SS G_CDS: -3.35 Total: -129.69 kcal Atomic # 8 Polarization: -106.93 SS G_CDS: -8.25 Total: -115.18 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 1.88 Total: 43.69 kcal Atomic # 16 Polarization: 107.62 SS G_CDS: -0.35 Total: 107.26 kcal Total: -82.94 -6.53 -89.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000434774038.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.482 kcal (2) G-P(sol) polarization free energy of solvation -82.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds