Wall clock time and date at job start Tue Mar 31 2020 01:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86800 * 120.00391 * 2 1 4 4 H 1.48492 * 109.47384 * 239.99733 * 3 2 1 5 5 H 1.48500 * 109.46729 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46863 * 119.99667 * 3 2 1 7 7 C 1.39950 * 120.00082 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00494 * 197.86002 * 7 2 1 9 9 C 1.41400 * 119.99539 * 17.85436 * 7 2 1 10 10 C 1.40720 * 120.24537 * 24.39535 * 9 7 2 11 11 C 1.37615 * 119.74367 * 180.02562 * 10 9 7 12 12 C 1.38636 * 120.25185 * 0.27407 * 11 10 9 13 13 C 1.50699 * 119.75289 * 179.70401 * 12 11 10 14 14 S 1.81401 * 109.46915 * 89.99596 * 13 12 11 15 15 O 1.42102 * 108.57911 * 294.48625 * 14 13 12 16 16 O 1.42101 * 108.57761 * 65.51857 * 14 13 12 17 17 C 1.81405 * 101.91961 * 179.97438 * 14 13 12 18 18 C 1.53776 * 113.61604 * 284.14088 * 17 14 13 19 19 C 1.53960 * 87.01996 * 220.04520 * 18 17 14 20 20 C 1.53776 * 113.61571 * 186.52815 * 17 14 13 21 21 C 1.38637 * 120.49605 * 359.44024 * 12 11 10 22 22 C 1.37614 * 120.25085 * 0.55928 * 21 12 11 23 23 H 0.97001 * 119.99459 * 0.02562 * 1 2 3 24 24 H 1.08000 * 120.12205 * 359.97438 * 10 9 7 25 25 H 1.08001 * 119.87216 * 179.97438 * 11 10 9 26 26 H 1.08995 * 109.47407 * 209.99698 * 13 12 11 27 27 H 1.09000 * 109.46523 * 329.99904 * 13 12 11 28 28 H 1.09004 * 112.84800 * 55.33322 * 17 14 13 29 29 H 1.09002 * 113.61610 * 334.56276 * 18 17 14 30 30 H 1.08995 * 113.61808 * 105.47197 * 18 17 14 31 31 H 1.08997 * 113.53690 * 270.81208 * 19 18 17 32 32 H 1.09001 * 113.66561 * 139.92432 * 19 18 17 33 33 H 1.08999 * 113.61546 * 254.53146 * 20 17 14 34 34 H 1.09003 * 113.61371 * 25.35153 * 20 17 14 35 35 H 1.08007 * 119.87424 * 180.26009 * 21 12 11 36 36 H 1.08006 * 120.12966 * 179.69993 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6963 -1.2124 5 1 1.2773 2.7464 0.0006 6 1 3.0960 1.6963 1.2126 7 6 2.0080 -1.2120 -0.0005 8 1 3.0489 -1.2347 0.2863 9 6 1.3520 -2.4069 -0.3765 10 6 0.2208 -2.3616 -1.2123 11 6 -0.4100 -3.5308 -1.5714 12 6 0.0615 -4.7495 -1.1084 13 6 -0.6419 -6.0224 -1.5032 14 16 0.0853 -6.6646 -3.0360 15 8 -0.1850 -5.7452 -4.0853 16 8 1.4296 -7.0440 -2.7750 17 6 -0.8942 -8.1657 -3.3153 18 6 -0.5068 -9.3343 -2.3939 19 6 -0.6887 -10.2528 -3.6160 20 6 -0.3882 -9.0222 -4.4879 21 6 1.1786 -4.8064 -0.2893 22 6 1.8252 -3.6500 0.0826 23 1 -0.4849 0.8401 -0.0004 24 1 -0.1513 -1.4129 -1.5699 25 1 -1.2786 -3.4984 -2.2125 26 1 -0.5286 -6.7612 -0.7100 27 1 -1.7009 -5.8182 -1.6612 28 1 -1.9664 -7.9716 -3.3471 29 1 0.5209 -9.2846 -2.0341 30 1 -1.2269 -9.5191 -1.5968 31 1 -1.7048 -10.6306 -3.7292 32 1 0.0659 -11.0358 -3.6910 33 1 -1.0126 -8.9553 -5.3788 34 1 0.6717 -8.8859 -4.7027 35 1 1.5398 -5.7616 0.0623 36 1 2.6924 -3.6962 0.7248 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453036052.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:59 Heat of formation + Delta-G solvation = -61.654115 kcal Electronic energy + Delta-G solvation = -19358.312692 eV Core-core repulsion = 16319.910463 eV Total energy + Delta-G solvation = -3038.402229 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.58672 -39.43627 -37.83891 -36.89051 -35.94122 -33.20447 -31.28128 -29.60259 -27.31716 -26.75365 -25.78066 -23.01463 -22.12484 -20.82441 -19.67915 -19.30141 -18.21649 -17.40678 -17.05123 -16.87341 -16.25755 -16.01193 -15.66037 -15.51069 -14.54816 -14.37261 -13.91360 -13.67473 -13.61232 -13.45762 -13.44101 -13.21388 -13.10693 -12.93676 -12.86457 -12.77162 -12.56509 -12.31733 -11.83512 -11.61887 -11.56557 -11.48135 -11.35692 -11.06761 -10.82250 -9.47295 -9.26426 -8.71684 -6.41027 -0.90177 0.88142 1.06341 1.36581 1.47972 1.52092 1.98300 2.17563 2.63465 2.76758 3.01267 3.38377 3.52299 3.65506 3.76366 3.86617 3.93086 4.10687 4.43565 4.50960 4.57986 4.64740 4.74557 4.76271 4.94900 4.98022 5.04339 5.06864 5.07823 5.25458 5.34581 5.39554 5.60824 5.83832 6.01578 6.04555 6.27838 6.59929 6.84256 6.92713 8.24813 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.047792 B = 0.003833 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.733265 B = 7302.793500 C = 7414.402262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.034 3.966 3 Si 0.986 3.014 4 H -0.262 1.262 5 H -0.264 1.264 6 H -0.256 1.256 7 C -0.494 4.494 8 H 0.081 0.919 9 C 0.084 3.916 10 C -0.196 4.196 11 C -0.094 4.094 12 C -0.229 4.229 13 C -0.512 4.512 14 S 2.383 3.617 15 O -0.994 6.994 16 O -0.980 6.980 17 C -0.585 4.585 18 C -0.122 4.122 19 C -0.118 4.118 20 C -0.130 4.130 21 C -0.077 4.077 22 C -0.248 4.248 23 H 0.292 0.708 24 H 0.106 0.894 25 H 0.112 0.888 26 H 0.158 0.842 27 H 0.152 0.848 28 H 0.182 0.818 29 H 0.092 0.908 30 H 0.114 0.886 31 H 0.109 0.891 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.078 0.922 35 H 0.126 0.874 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.639 -15.884 -3.760 17.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.182 4.182 3 Si 0.806 3.194 4 H -0.187 1.187 5 H -0.188 1.188 6 H -0.180 1.180 7 C -0.523 4.523 8 H 0.099 0.901 9 C 0.081 3.919 10 C -0.216 4.216 11 C -0.113 4.113 12 C -0.232 4.232 13 C -0.642 4.642 14 S 2.576 3.424 15 O -0.991 6.991 16 O -0.977 6.977 17 C -0.698 4.698 18 C -0.160 4.160 19 C -0.156 4.156 20 C -0.169 4.169 21 C -0.096 4.096 22 C -0.267 4.267 23 H 0.103 0.897 24 H 0.124 0.876 25 H 0.130 0.870 26 H 0.176 0.824 27 H 0.170 0.830 28 H 0.199 0.801 29 H 0.110 0.890 30 H 0.132 0.868 31 H 0.127 0.873 32 H 0.103 0.897 33 H 0.117 0.883 34 H 0.097 0.903 35 H 0.144 0.856 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -5.157 -15.400 -4.297 16.800 hybrid contribution -0.188 0.980 0.435 1.088 sum -5.346 -14.421 -3.862 15.857 Atomic orbital electron populations 1.69856 1.09121 1.31049 1.34075 1.26858 0.95576 1.04764 0.90993 0.85189 0.78809 0.75201 0.80163 1.18656 1.18812 1.18001 1.19944 0.98610 0.92483 1.41226 0.90110 1.18076 0.91666 0.93338 0.88805 1.21331 1.00509 0.97220 1.02498 1.20939 0.98995 0.92698 0.98686 1.18610 1.01769 0.92431 1.10395 1.28764 1.11220 1.04788 1.19421 1.09163 0.77570 0.77785 0.77922 1.93463 1.86629 1.63452 1.55602 1.93468 1.34526 1.83893 1.85855 1.31660 1.15787 1.13860 1.08462 1.22896 1.03739 0.91673 0.97701 1.22821 1.04053 0.95376 0.93359 1.22800 1.01688 0.96069 0.96321 1.20878 0.94636 0.97704 0.96396 1.21242 1.04695 0.93024 1.07780 0.89732 0.87616 0.86969 0.82393 0.83000 0.80071 0.88968 0.86764 0.87276 0.89656 0.88311 0.90299 0.85620 0.87721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.97 10.95 21.83 0.24 -42.73 16 2 C 0.03 1.75 5.14 85.26 0.44 2.19 16 3 Si 0.99 38.46 29.60 68.60 2.03 40.49 16 4 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 5 H -0.26 -9.61 7.11 99.48 0.71 -8.91 16 6 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 7 C -0.49 -27.32 9.05 23.46 0.21 -27.10 16 8 H 0.08 4.27 7.91 -2.91 -0.02 4.25 16 9 C 0.08 4.75 5.58 -21.29 -0.12 4.63 16 10 C -0.20 -10.86 8.70 22.73 0.20 -10.66 16 11 C -0.09 -4.59 9.67 22.22 0.21 -4.37 16 12 C -0.23 -9.97 5.16 -19.67 -0.10 -10.07 16 13 C -0.51 -15.16 5.92 71.24 0.42 -14.74 16 14 S 2.38 74.48 4.63 -56.49 -0.26 74.22 16 15 O -0.99 -40.21 18.10 -127.37 -2.31 -42.52 16 16 O -0.98 -37.38 17.39 -127.37 -2.22 -39.59 16 17 C -0.59 -10.52 4.15 31.12 0.13 -10.39 16 18 C -0.12 -1.72 7.64 31.18 0.24 -1.49 16 19 C -0.12 -1.40 8.09 31.18 0.25 -1.15 16 20 C -0.13 -2.26 7.67 31.12 0.24 -2.02 16 21 C -0.08 -3.52 9.67 22.22 0.21 -3.31 16 22 C -0.25 -12.75 9.80 22.73 0.22 -12.53 16 23 H 0.29 13.78 8.30 -92.71 -0.77 13.02 16 24 H 0.11 6.05 6.15 -2.91 -0.02 6.03 16 25 H 0.11 4.90 8.06 -2.91 -0.02 4.88 16 26 H 0.16 3.46 8.08 -2.39 -0.02 3.44 16 27 H 0.15 3.52 8.08 -2.39 -0.02 3.50 16 28 H 0.18 2.06 8.14 -2.38 -0.02 2.04 16 29 H 0.09 1.55 7.52 -2.39 -0.02 1.54 16 30 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.10 1.41 8.14 -2.39 -0.02 1.40 16 34 H 0.08 1.59 8.10 -2.39 -0.02 1.57 16 35 H 0.13 4.84 8.06 -2.91 -0.02 4.81 16 36 H 0.10 5.03 8.06 -2.91 -0.02 5.00 16 Total: -1.00 -75.31 317.25 1.12 -74.20 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: 1.07 Total: 26.94 kcal Atomic # 6 Polarization: -93.56 SS G_CDS: 2.56 Total: -91.00 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: 0.24 Total: -42.73 kcal Atomic # 8 Polarization: -77.59 SS G_CDS: -4.52 Total: -82.11 kcal Atomic # 14 Polarization: 38.46 SS G_CDS: 2.03 Total: 40.49 kcal Atomic # 16 Polarization: 74.48 SS G_CDS: -0.26 Total: 74.22 kcal Total: -75.31 1.12 -74.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453036052.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.541 kcal (2) G-P(sol) polarization free energy of solvation -75.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds