Wall clock time and date at job start Tue Mar 31 2020 00:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47029 * 2 1 4 4 C 1.36641 * 120.00493 * 264.33460 * 3 2 1 5 5 H 1.07991 * 120.00495 * 133.50874 * 4 3 2 6 6 C 1.39191 * 119.99523 * 313.51378 * 4 3 2 7 7 N 1.31279 * 119.99945 * 2.94634 * 6 4 3 8 8 Si 1.86796 * 119.99995 * 182.95182 * 6 4 3 9 9 H 1.48497 * 109.47400 * 59.99602 * 8 6 4 10 10 H 1.48501 * 109.47339 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.46738 * 299.99752 * 8 6 4 12 12 C 1.34776 * 119.99978 * 84.32898 * 3 2 1 13 13 O 1.21740 * 120.00144 * 180.02562 * 12 3 2 14 14 C 1.46416 * 120.00025 * 0.02562 * 12 3 2 15 15 C 1.34832 * 120.00327 * 173.92821 * 14 12 3 16 16 C 1.47314 * 119.99822 * 348.17575 * 15 14 12 17 17 C 1.40245 * 120.94663 * 312.50937 * 16 15 14 18 18 C 1.37911 * 118.99264 * 179.97438 * 17 16 15 19 19 N 1.31936 * 120.94929 * 0.02562 * 18 17 16 20 20 C 1.31972 * 122.10714 * 359.97438 * 19 18 17 21 21 Cl 1.73604 * 119.55287 * 180.02562 * 20 19 18 22 22 C 1.38163 * 120.89513 * 359.97438 * 20 19 18 23 23 H 1.09003 * 109.47307 * 299.99747 * 1 2 3 24 24 H 1.08999 * 109.47416 * 60.00350 * 1 2 3 25 25 H 1.09002 * 109.46839 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46846 * 240.00412 * 2 1 3 27 27 H 1.08994 * 109.47463 * 120.00134 * 2 1 3 28 28 H 0.97000 * 120.00305 * 180.02562 * 7 6 4 29 29 H 1.08004 * 119.99651 * 353.92140 * 14 12 3 30 30 H 1.08004 * 120.00253 * 168.18210 * 15 14 12 31 31 H 1.07993 * 120.50446 * 359.95431 * 17 16 15 32 32 H 1.08001 * 119.52415 * 180.27808 * 18 17 16 33 33 H 1.08005 * 120.52767 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3562 1.9865 -1.1775 5 1 2.0093 2.9870 -1.3894 6 6 3.1475 1.3134 -2.1039 7 7 3.5211 0.0764 -1.8723 8 14 3.6780 2.1704 -3.6766 9 1 4.4713 3.3793 -3.3383 10 1 4.5087 1.2452 -4.4885 11 1 2.4763 2.5681 -4.4531 12 6 2.1342 2.0550 1.1615 13 8 2.5395 3.2029 1.1615 14 6 1.7725 1.4063 2.4233 15 6 2.0027 2.0340 3.5943 16 6 2.8450 3.2421 3.6292 17 6 4.0832 3.2773 2.9716 18 6 4.8387 4.4296 3.0303 19 7 4.4120 5.4877 3.6928 20 6 3.2540 5.4990 4.3258 21 17 2.7572 6.9284 5.1767 22 6 2.4313 4.3891 4.3196 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 4.0729 -0.3925 -2.5177 29 1 1.3213 0.4251 2.4162 30 1 1.5698 1.6510 4.5066 31 1 4.4398 2.4151 2.4278 32 1 5.7915 4.4677 2.5232 33 1 1.4850 4.4047 4.8400 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492284780.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:39 Heat of formation + Delta-G solvation = 24.332071 kcal Electronic energy + Delta-G solvation = -19365.371157 eV Core-core repulsion = 16225.113519 eV Total energy + Delta-G solvation = -3140.257638 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.87745 -38.58316 -36.38482 -35.35600 -33.78986 -32.20428 -30.70249 -30.17557 -29.52777 -25.68279 -23.78317 -23.12116 -22.36983 -21.11204 -18.42203 -17.28324 -16.61322 -16.07271 -15.80309 -15.49132 -14.98054 -14.20162 -14.11485 -13.90325 -13.45677 -13.23679 -12.93949 -12.86557 -12.05898 -11.80628 -11.72824 -11.52546 -11.36810 -11.15983 -11.08609 -10.96629 -10.63602 -10.41759 -10.17267 -9.93609 -9.29291 -9.01889 -8.75917 -8.67990 -7.93597 -7.48219 -6.39982 -4.18134 1.08127 1.43415 2.07923 2.24056 3.15579 3.19345 3.24610 4.05429 4.11456 4.31256 4.74354 4.81452 4.97044 5.00033 5.34537 5.35910 5.51392 5.64307 5.82235 5.91213 5.95522 6.10482 6.17937 6.23583 6.40961 6.48636 6.58379 6.79386 6.86263 6.92554 7.24636 7.49767 8.12635 8.21856 8.44081 9.07465 9.24697 9.90132 10.58917 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.021217 B = 0.005058 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.350218 B = 5534.827405 C = 6324.540748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.087 3.913 3 N -0.424 5.424 4 C -0.302 4.302 5 H 0.086 0.914 6 C 0.043 3.957 7 N -0.875 5.875 8 Si 0.924 3.076 9 H -0.270 1.270 10 H -0.283 1.283 11 H -0.273 1.273 12 C 0.471 3.529 13 O -0.569 6.569 14 C -0.147 4.147 15 C -0.099 4.099 16 C 0.024 3.976 17 C -0.086 4.086 18 C 0.105 3.895 19 N -0.486 5.486 20 C 0.165 3.835 21 Cl -0.055 7.055 22 C -0.150 4.150 23 H 0.040 0.960 24 H 0.055 0.945 25 H 0.050 0.950 26 H 0.125 0.875 27 H 0.046 0.954 28 H 0.271 0.729 29 H 0.128 0.872 30 H 0.133 0.867 31 H 0.135 0.865 32 H 0.158 0.842 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.458 -0.121 9.632 9.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.037 4.037 3 N -0.141 5.141 4 C -0.431 4.431 5 H 0.104 0.896 6 C -0.162 4.162 7 N -0.513 5.513 8 Si 0.750 3.250 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.198 1.198 12 C 0.261 3.739 13 O -0.455 6.455 14 C -0.169 4.169 15 C -0.120 4.120 16 C 0.015 3.985 17 C -0.106 4.106 18 C -0.050 4.050 19 N -0.198 5.198 20 C 0.000 4.000 21 Cl -0.027 7.027 22 C -0.171 4.171 23 H 0.060 0.940 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.142 0.858 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.146 0.854 30 H 0.151 0.849 31 H 0.153 0.847 32 H 0.176 0.824 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.662 1.131 9.540 9.750 hybrid contribution -0.481 -0.468 -0.876 1.103 sum -2.143 0.664 8.664 8.950 Atomic orbital electron populations 1.22246 0.98324 1.00350 1.01407 1.21865 0.91509 0.85730 1.04562 1.43372 1.54149 1.11568 1.04968 1.19316 1.29244 1.00983 0.93523 0.89601 1.25581 0.94874 0.95648 1.00068 1.69554 1.34889 1.10108 1.36743 0.86042 0.79013 0.79320 0.80614 1.19556 1.20813 1.19786 1.18406 0.83472 0.87936 0.84071 1.90716 1.50252 1.18142 1.86360 1.23633 1.00095 0.99372 0.93775 1.21974 0.98074 0.94069 0.97851 1.19105 0.93484 0.93077 0.92820 1.22203 0.93661 0.99968 0.94747 1.22308 0.99710 0.87471 0.95492 1.66732 1.14587 1.29817 1.08664 1.21195 0.92837 0.88121 0.97826 1.98356 1.89658 1.39624 1.75020 1.21736 1.00562 0.92158 1.02634 0.94049 0.92554 0.93080 0.85787 0.93543 0.91826 0.85411 0.84913 0.84724 0.82443 0.84571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 10.04 37.16 0.37 -2.46 16 2 C 0.09 1.78 5.24 -4.04 -0.02 1.76 16 3 N -0.42 -10.12 2.52 -116.41 -0.29 -10.41 16 4 C -0.30 -7.97 8.79 -15.05 -0.13 -8.10 16 5 H 0.09 2.38 7.83 -52.49 -0.41 1.97 16 6 C 0.04 1.08 5.35 -17.43 -0.09 0.99 16 7 N -0.88 -22.19 10.89 55.51 0.60 -21.58 16 8 Si 0.92 20.17 29.56 -169.99 -5.02 15.14 16 9 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 10 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 11 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 12 C 0.47 10.73 6.78 -12.97 -0.09 10.64 16 13 O -0.57 -14.55 12.42 5.15 0.06 -14.49 16 14 C -0.15 -2.57 8.65 -37.50 -0.32 -2.89 16 15 C -0.10 -1.51 9.84 -37.10 -0.37 -1.88 16 16 C 0.02 0.41 4.37 -104.75 -0.46 -0.05 16 17 C -0.09 -1.57 6.89 -38.95 -0.27 -1.83 16 18 C 0.11 1.86 11.17 -17.63 -0.20 1.66 16 19 N -0.49 -8.97 10.32 -10.46 -0.11 -9.08 16 20 C 0.17 2.84 7.27 -17.52 -0.13 2.72 16 21 Cl -0.05 -0.81 29.10 -51.86 -1.51 -2.32 16 22 C -0.15 -2.43 9.67 -38.90 -0.38 -2.81 16 23 H 0.04 0.66 7.40 -51.93 -0.38 0.28 16 24 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.12 2.85 5.39 -51.93 -0.28 2.57 16 27 H 0.05 0.86 6.52 -51.93 -0.34 0.52 16 28 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 29 H 0.13 1.90 6.03 -52.48 -0.32 1.59 16 30 H 0.13 1.50 8.06 -52.48 -0.42 1.07 16 31 H 0.13 2.54 7.52 -52.49 -0.39 2.14 16 32 H 0.16 2.39 8.06 -52.49 -0.42 1.96 16 33 H 0.14 1.84 8.06 -52.48 -0.42 1.41 16 LS Contribution 299.62 15.07 4.52 4.52 Total: -1.00 -29.37 299.62 -7.20 -36.57 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -3.37 Total: 3.91 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -2.08 Total: -2.26 kcal Atomic # 7 Polarization: -41.28 SS G_CDS: 0.20 Total: -41.07 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: 0.06 Total: -14.49 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.14 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.51 Total: -2.32 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.37 -7.20 -36.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492284780.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.901 kcal (2) G-P(sol) polarization free energy of solvation -29.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds