Wall clock time and date at job start Tue Mar 31 2020 00:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47029 * 2 1 4 4 C 1.36641 * 120.00493 * 264.33460 * 3 2 1 5 5 H 1.07991 * 120.00495 * 133.50874 * 4 3 2 6 6 C 1.39191 * 119.99523 * 313.51378 * 4 3 2 7 7 N 1.31279 * 119.99945 * 2.94634 * 6 4 3 8 8 Si 1.86796 * 119.99995 * 182.95182 * 6 4 3 9 9 H 1.48497 * 109.47400 * 59.99602 * 8 6 4 10 10 H 1.48501 * 109.47339 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.46738 * 299.99752 * 8 6 4 12 12 C 1.34776 * 119.99978 * 84.32898 * 3 2 1 13 13 O 1.21740 * 120.00144 * 180.02562 * 12 3 2 14 14 C 1.46416 * 120.00025 * 0.02562 * 12 3 2 15 15 C 1.34832 * 120.00327 * 173.92821 * 14 12 3 16 16 C 1.47314 * 119.99822 * 348.17575 * 15 14 12 17 17 C 1.40245 * 120.94663 * 312.50937 * 16 15 14 18 18 C 1.37911 * 118.99264 * 179.97438 * 17 16 15 19 19 N 1.31936 * 120.94929 * 0.02562 * 18 17 16 20 20 C 1.31972 * 122.10714 * 359.97438 * 19 18 17 21 21 Cl 1.73604 * 119.55287 * 180.02562 * 20 19 18 22 22 C 1.38163 * 120.89513 * 359.97438 * 20 19 18 23 23 H 1.09003 * 109.47307 * 299.99747 * 1 2 3 24 24 H 1.08999 * 109.47416 * 60.00350 * 1 2 3 25 25 H 1.09002 * 109.46839 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46846 * 240.00412 * 2 1 3 27 27 H 1.08994 * 109.47463 * 120.00134 * 2 1 3 28 28 H 0.97000 * 120.00305 * 180.02562 * 7 6 4 29 29 H 1.08004 * 119.99651 * 353.92140 * 14 12 3 30 30 H 1.08004 * 120.00253 * 168.18210 * 15 14 12 31 31 H 1.07993 * 120.50446 * 359.95431 * 17 16 15 32 32 H 1.08001 * 119.52415 * 180.27808 * 18 17 16 33 33 H 1.08005 * 120.52767 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3562 1.9865 -1.1775 5 1 2.0093 2.9870 -1.3894 6 6 3.1475 1.3134 -2.1039 7 7 3.5211 0.0764 -1.8723 8 14 3.6780 2.1704 -3.6766 9 1 4.4713 3.3793 -3.3383 10 1 4.5087 1.2452 -4.4885 11 1 2.4763 2.5681 -4.4531 12 6 2.1342 2.0550 1.1615 13 8 2.5395 3.2029 1.1615 14 6 1.7725 1.4063 2.4233 15 6 2.0027 2.0340 3.5943 16 6 2.8450 3.2421 3.6292 17 6 4.0832 3.2773 2.9716 18 6 4.8387 4.4296 3.0303 19 7 4.4120 5.4877 3.6928 20 6 3.2540 5.4990 4.3258 21 17 2.7572 6.9284 5.1767 22 6 2.4313 4.3891 4.3196 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 4.0729 -0.3925 -2.5177 29 1 1.3213 0.4251 2.4162 30 1 1.5698 1.6510 4.5066 31 1 4.4398 2.4151 2.4278 32 1 5.7915 4.4677 2.5232 33 1 1.4850 4.4047 4.8400 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492284780.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:39 Heat of formation + Delta-G solvation = 7.498684 kcal Electronic energy + Delta-G solvation = -19366.101107 eV Core-core repulsion = 16225.113519 eV Total energy + Delta-G solvation = -3140.987588 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.27555 -40.21593 -37.65213 -37.02518 -35.25348 -34.02455 -32.03988 -31.56584 -31.12046 -27.42290 -25.28796 -24.46937 -23.89519 -22.62650 -19.95091 -18.91722 -18.25964 -17.45268 -17.38187 -16.91581 -16.62000 -15.80072 -15.64739 -15.32817 -14.95749 -14.65551 -14.48581 -14.34439 -13.50559 -13.48029 -13.24552 -12.94944 -12.88607 -12.64978 -12.58189 -12.36081 -12.31474 -12.09476 -11.76275 -11.32333 -10.87003 -10.66202 -10.36278 -9.99485 -9.45854 -9.28472 -8.27762 -6.14824 -0.26592 0.09977 0.78228 0.90439 1.38242 1.41923 1.48467 2.26889 2.60283 2.76718 3.10738 3.18678 3.48847 3.72821 4.03390 4.08662 4.12558 4.26252 4.42824 4.61748 4.65855 4.70433 4.80912 4.86878 5.03950 5.11454 5.24439 5.36047 5.42117 5.54321 5.59682 5.71976 6.29142 6.63142 6.77150 7.20514 7.49061 8.11862 8.68177 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.021217 B = 0.005058 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.350218 B = 5534.827405 C = 6324.540748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.087 3.913 3 N -0.444 5.444 4 C -0.331 4.331 5 H 0.056 0.944 6 C 0.010 3.990 7 N -0.889 5.889 8 Si 0.976 3.024 9 H -0.283 1.283 10 H -0.269 1.269 11 H -0.267 1.267 12 C 0.465 3.535 13 O -0.609 6.609 14 C -0.171 4.171 15 C -0.061 4.061 16 C 0.006 3.994 17 C -0.100 4.100 18 C 0.094 3.906 19 N -0.505 5.505 20 C 0.151 3.849 21 Cl -0.035 7.035 22 C -0.145 4.145 23 H 0.054 0.946 24 H 0.033 0.967 25 H 0.083 0.917 26 H 0.097 0.903 27 H 0.067 0.933 28 H 0.274 0.726 29 H 0.159 0.841 30 H 0.188 0.812 31 H 0.120 0.880 32 H 0.172 0.828 33 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.606 -0.847 11.376 11.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.035 4.035 3 N -0.161 5.161 4 C -0.460 4.460 5 H 0.074 0.926 6 C -0.192 4.192 7 N -0.527 5.527 8 Si 0.800 3.200 9 H -0.209 1.209 10 H -0.194 1.194 11 H -0.192 1.192 12 C 0.257 3.743 13 O -0.496 6.496 14 C -0.192 4.192 15 C -0.081 4.081 16 C -0.002 4.002 17 C -0.121 4.121 18 C -0.061 4.061 19 N -0.218 5.218 20 C -0.013 4.013 21 Cl -0.006 7.006 22 C -0.166 4.166 23 H 0.073 0.927 24 H 0.052 0.948 25 H 0.101 0.899 26 H 0.115 0.885 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.177 0.823 30 H 0.205 0.795 31 H 0.138 0.862 32 H 0.189 0.811 33 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -2.824 0.378 11.293 11.647 hybrid contribution -0.110 -0.121 -1.258 1.268 sum -2.934 0.257 10.035 10.458 Atomic orbital electron populations 1.22129 0.95777 1.02295 1.00979 1.21877 0.93584 0.83914 1.04173 1.43578 1.55153 1.12754 1.04643 1.19166 1.30853 1.00420 0.95560 0.92581 1.26134 0.94620 0.96202 1.02267 1.69648 1.35043 1.10500 1.37494 0.85272 0.78670 0.78065 0.77994 1.20916 1.19371 1.19180 1.19261 0.82000 0.87535 0.85551 1.90683 1.51655 1.19975 1.87318 1.23489 1.03068 1.01026 0.91586 1.22536 0.94737 0.91699 0.99084 1.19489 0.93484 0.94566 0.92702 1.22192 0.94860 0.99739 0.95277 1.22566 1.00457 0.87396 0.95645 1.66777 1.15569 1.30078 1.09356 1.21576 0.92730 0.89321 0.97718 1.98358 1.89349 1.38506 1.74411 1.22053 1.01384 0.91211 1.01909 0.92658 0.94750 0.89852 0.88477 0.91479 0.91615 0.82330 0.79477 0.86179 0.81126 0.81360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.02 10.04 71.98 0.72 -4.30 16 2 C 0.09 3.53 5.24 86.38 0.45 3.98 16 3 N -0.44 -21.50 2.52 -640.41 -1.61 -23.11 16 4 C -0.33 -18.12 8.79 84.17 0.74 -17.38 16 5 H 0.06 3.30 7.83 -2.92 -0.02 3.28 16 6 C 0.01 0.54 5.35 85.00 0.45 0.99 16 7 N -0.89 -45.73 10.89 21.70 0.24 -45.49 16 8 Si 0.98 42.26 29.56 68.60 2.03 44.29 16 9 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 10 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 11 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 12 C 0.46 21.17 6.78 86.37 0.59 21.75 16 13 O -0.61 -31.73 12.42 -4.47 -0.06 -31.79 16 14 C -0.17 -5.51 8.65 23.62 0.20 -5.31 16 15 C -0.06 -1.63 9.84 23.88 0.24 -1.39 16 16 C 0.01 0.20 4.37 -19.95 -0.09 0.11 16 17 C -0.10 -3.67 6.89 22.68 0.16 -3.52 16 18 C 0.09 3.36 11.17 84.60 0.94 4.30 16 19 N -0.51 -18.46 10.32 -187.01 -1.93 -20.39 16 20 C 0.15 4.99 7.27 84.65 0.62 5.61 16 21 Cl -0.03 -0.96 29.10 -2.72 -0.08 -1.04 16 22 C -0.14 -4.34 9.67 22.71 0.22 -4.12 16 23 H 0.05 1.64 7.40 -2.39 -0.02 1.62 16 24 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.10 4.49 5.39 -2.39 -0.01 4.48 16 27 H 0.07 2.36 6.52 -2.39 -0.02 2.35 16 28 H 0.27 13.29 8.31 -92.71 -0.77 12.52 16 29 H 0.16 4.09 6.03 -2.91 -0.02 4.08 16 30 H 0.19 3.00 8.06 -2.91 -0.02 2.97 16 31 H 0.12 4.66 7.52 -2.91 -0.02 4.64 16 32 H 0.17 5.33 8.06 -2.91 -0.02 5.30 16 33 H 0.17 3.84 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -66.14 299.62 4.96 -61.17 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 1.13 Total: 15.63 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: 5.24 Total: 0.73 kcal Atomic # 7 Polarization: -85.69 SS G_CDS: -3.30 Total: -88.99 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -0.06 Total: -31.79 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -0.08 Total: -1.04 kcal Total: -66.14 4.96 -61.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492284780.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.672 kcal (2) G-P(sol) polarization free energy of solvation -66.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds