Wall clock time and date at job start Tue Mar 31 2020 01:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40084 * 126.04083 * 2 1 4 4 C 1.30829 * 108.20690 * 180.23307 * 3 2 1 5 5 C 1.39873 * 108.20257 * 359.77992 * 4 3 2 6 6 C 1.34955 * 126.03449 * 179.84299 * 2 1 3 7 7 C 1.50694 * 126.12676 * 0.04083 * 6 2 1 8 8 C 1.50699 * 109.47188 * 264.70509 * 7 6 2 9 9 N 1.29946 * 126.29335 * 270.02919 * 8 7 6 10 10 O 1.21300 * 110.25269 * 179.67956 * 9 8 7 11 11 C 1.33643 * 109.81038 * 0.47090 * 10 9 8 12 12 C 1.50698 * 126.55187 * 179.79880 * 11 10 9 13 13 S 1.80998 * 109.47116 * 269.68760 * 12 11 10 14 14 C 1.76199 * 100.00013 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00250 * 0.02562 * 14 13 12 16 16 C 1.38798 * 120.00102 * 179.72368 * 14 13 12 17 17 N 1.31626 * 120.00155 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00292 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47145 * 60.00107 * 18 16 14 20 20 H 1.48496 * 109.47291 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47229 * 300.00299 * 18 16 14 22 22 N 1.31131 * 106.89729 * 359.53556 * 11 10 9 23 23 H 1.09003 * 109.47218 * 270.14902 * 1 2 3 24 24 H 1.08996 * 109.46806 * 30.15402 * 1 2 3 25 25 H 1.09000 * 109.46992 * 150.15530 * 1 2 3 26 26 H 1.08001 * 125.90043 * 179.74352 * 4 3 2 27 27 H 1.08002 * 126.03782 * 179.97438 * 5 4 3 28 28 H 1.09006 * 109.47162 * 144.71331 * 7 6 2 29 29 H 1.08997 * 109.47514 * 24.71065 * 7 6 2 30 30 H 1.09001 * 109.47434 * 149.68522 * 12 11 10 31 31 H 1.08999 * 109.47072 * 29.69002 * 12 11 10 32 32 H 0.97004 * 120.00604 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1327 0.0000 4 6 3.5346 0.7320 -0.0051 5 6 3.5436 -0.6667 -0.0033 6 6 2.2589 -1.0913 0.0030 7 6 1.7973 -2.5258 0.0061 8 6 1.7674 -3.0409 1.4220 9 7 2.7451 -3.6230 2.0495 10 8 2.4062 -3.9136 3.1774 11 6 1.1385 -3.5422 3.3793 12 6 0.3400 -3.7260 4.6441 13 16 -0.5218 -5.3167 4.5877 14 6 -1.3499 -5.2713 6.1422 15 1 -1.2295 -4.4183 6.7936 16 6 -2.1622 -6.3290 6.5270 17 7 -2.3134 -7.3662 5.7309 18 14 -3.0396 -6.2812 8.1754 19 1 -3.9404 -5.1015 8.2227 20 1 -3.8380 -7.5214 8.3473 21 1 -2.0376 -6.1828 9.2669 22 7 0.7239 -2.9820 2.2685 23 1 -0.3634 0.0027 1.0277 24 1 -0.3633 0.8886 -0.5162 25 1 -0.3633 -0.8914 -0.5114 26 1 4.4054 1.3709 -0.0103 27 1 4.4210 -1.2964 -0.0068 28 1 2.4849 -3.1301 -0.5858 29 1 0.7976 -2.5868 -0.4240 30 1 -0.3892 -2.9207 4.7338 31 1 1.0105 -3.7062 5.5032 32 1 -2.8808 -8.1056 5.9999 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000544926953.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:06 Heat of formation + Delta-G solvation = 142.511962 kcal Electronic energy + Delta-G solvation = -18429.655333 eV Core-core repulsion = 15328.858817 eV Total energy + Delta-G solvation = -3100.796516 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -45.33396 -41.37012 -36.04322 -33.99157 -33.29952 -32.60395 -31.66097 -28.60155 -27.69275 -26.83215 -25.67146 -23.48100 -21.74443 -21.27378 -19.91361 -18.03747 -17.93539 -17.05286 -16.75038 -15.75848 -14.95271 -14.82769 -14.57843 -14.41475 -14.25038 -13.91535 -13.34787 -13.14190 -12.89045 -12.76019 -12.57188 -12.41200 -11.93790 -11.41612 -11.21086 -11.13228 -10.97879 -10.84132 -10.76331 -10.28921 -9.52010 -9.44462 -9.21326 -8.69063 -8.60378 -6.78609 -6.39563 -4.14716 1.27608 1.63346 2.24326 2.43265 2.67200 2.98265 3.15994 3.18147 3.21380 3.36786 3.76481 4.03412 4.12611 4.35966 4.42941 4.79598 4.98022 4.99354 5.06365 5.14164 5.22560 5.35280 5.40596 5.54908 5.56532 5.63616 5.84628 5.97008 6.07336 6.18313 6.49774 6.80961 7.44508 7.54392 8.18831 8.36896 9.06414 10.68340 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.035328 B = 0.003400 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.392572 B = 8233.070873 C = 8519.739307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.362 5.362 3 N -0.295 5.295 4 C 0.043 3.957 5 C -0.261 4.261 6 C 0.086 3.914 7 C 0.039 3.961 8 C 0.167 3.833 9 N -0.381 5.381 10 O 0.080 5.920 11 C 0.231 3.769 12 C -0.044 4.044 13 S -0.080 6.080 14 C -0.528 4.528 15 H 0.080 0.920 16 C 0.076 3.924 17 N -0.868 5.868 18 Si 0.924 3.076 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.272 1.272 22 N -0.481 5.481 23 H 0.081 0.919 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.184 0.816 27 H 0.148 0.852 28 H 0.118 0.882 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.103 0.897 32 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.366 11.160 -10.375 16.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.145 5.145 3 N -0.117 5.117 4 C -0.142 4.142 5 C -0.290 4.290 6 C -0.043 4.043 7 C -0.002 4.002 8 C -0.107 4.107 9 N -0.089 5.089 10 O 0.022 5.978 11 C 0.011 3.989 12 C -0.193 4.193 13 S 0.146 5.854 14 C -0.676 4.676 15 H 0.098 0.902 16 C -0.134 4.134 17 N -0.502 5.502 18 Si 0.750 3.250 19 H -0.197 1.197 20 H -0.207 1.207 21 H -0.197 1.197 22 N -0.216 5.216 23 H 0.099 0.901 24 H 0.107 0.893 25 H 0.108 0.892 26 H 0.201 0.799 27 H 0.166 0.834 28 H 0.136 0.864 29 H 0.125 0.875 30 H 0.128 0.872 31 H 0.121 0.879 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.816 11.267 -11.841 17.709 hybrid contribution -0.097 0.116 2.142 2.148 sum 6.719 11.383 -9.699 16.395 Atomic orbital electron populations 1.21930 0.73897 1.04299 1.04203 1.48532 1.06771 1.03118 1.56073 1.77360 1.01884 1.07860 1.24578 1.23813 0.95260 0.94960 1.00177 1.21284 0.96204 0.95159 1.16387 1.20621 0.91499 0.89422 1.02713 1.18337 1.04837 0.89162 0.87825 1.25244 0.86258 0.99783 0.99411 1.74564 1.23515 1.18031 0.92828 1.85302 1.28464 1.59735 1.24336 1.28183 0.82795 0.90850 0.97081 1.21993 0.99991 1.07807 0.89471 1.85177 1.58061 1.13259 1.28914 1.22668 1.33637 1.08477 1.02804 0.90198 1.25021 0.95686 0.94361 0.98375 1.69981 1.36676 1.07203 1.36351 0.86126 0.79307 0.77834 0.81729 1.19728 1.20728 1.19689 1.71881 1.27330 1.21849 1.00508 0.90086 0.89292 0.89213 0.79933 0.83376 0.86389 0.87452 0.87161 0.87876 0.91858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.93 11.27 59.85 0.67 1.61 16 2 N -0.36 -4.56 4.01 -63.89 -0.26 -4.82 16 3 N -0.30 -4.00 12.58 30.62 0.39 -3.61 16 4 C 0.04 0.50 12.03 -17.37 -0.21 0.29 16 5 C -0.26 -3.09 10.72 -40.01 -0.43 -3.52 16 6 C 0.09 1.07 6.17 -82.26 -0.51 0.56 16 7 C 0.04 0.44 6.13 -29.04 -0.18 0.26 16 8 C 0.17 2.59 7.45 -156.37 -1.17 1.43 16 9 N -0.38 -6.42 12.16 30.90 0.38 -6.05 16 10 O 0.08 1.43 11.31 18.10 0.20 1.63 16 11 C 0.23 4.18 7.77 -13.06 -0.10 4.07 16 12 C -0.04 -0.82 6.30 36.00 0.23 -0.60 16 13 S -0.08 -1.94 21.42 -107.50 -2.30 -4.25 16 14 C -0.53 -13.93 9.50 30.94 0.29 -13.64 16 15 H 0.08 1.98 7.80 -52.49 -0.41 1.58 16 16 C 0.08 2.02 5.49 -17.43 -0.10 1.92 16 17 N -0.87 -24.57 13.22 55.49 0.73 -23.84 16 18 Si 0.92 20.25 29.55 -169.99 -5.02 15.23 16 19 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 20 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 21 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 22 N -0.48 -8.39 11.55 -9.87 -0.11 -8.51 16 23 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.09 0.68 6.97 -51.93 -0.36 0.32 16 26 H 0.18 1.47 8.06 -52.49 -0.42 1.05 16 27 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 28 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.11 1.03 6.94 -51.93 -0.36 0.67 16 30 H 0.11 1.97 8.14 -51.92 -0.42 1.54 16 31 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 32 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 306.79 15.07 4.62 4.62 Total: -1.00 -31.87 306.79 -6.09 -37.96 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: -3.23 Total: -0.77 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -1.49 Total: -7.61 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: 1.12 Total: -46.82 kcal Atomic # 8 Polarization: 1.43 SS G_CDS: 0.20 Total: 1.63 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 16 Polarization: -1.94 SS G_CDS: -2.30 Total: -4.25 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.87 -6.09 -37.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000544926953.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.472 kcal (2) G-P(sol) polarization free energy of solvation -31.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds