Wall clock time and date at job start Tue Mar 31 2020 01:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86808 * 119.99495 * 2 1 4 4 H 1.48498 * 109.47269 * 270.00023 * 3 2 1 5 5 H 1.48500 * 109.47237 * 30.00561 * 3 2 1 6 6 H 1.48497 * 109.46695 * 150.00241 * 3 2 1 7 7 C 1.37869 * 120.00177 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00074 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00180 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47470 * 179.97438 * 9 7 2 11 11 S 1.81396 * 109.47019 * 179.97438 * 10 9 7 12 12 O 1.42104 * 108.57854 * 65.51491 * 11 10 9 13 13 O 1.42101 * 108.57904 * 294.48914 * 11 10 9 14 14 C 1.81398 * 101.91988 * 180.02562 * 11 10 9 15 15 C 1.50694 * 109.47431 * 180.02562 * 14 11 10 16 16 C 1.32566 * 120.00286 * 118.55408 * 15 14 11 17 17 C 1.47808 * 119.99780 * 352.93820 * 16 15 14 18 18 C 1.39534 * 120.14126 * 138.01591 * 17 16 15 19 19 C 1.37970 * 119.85513 * 179.97438 * 18 17 16 20 20 C 1.38347 * 120.14348 * 359.97007 * 19 18 17 21 21 C 1.38335 * 120.28595 * 0.02562 * 20 19 18 22 22 C 1.37978 * 120.14070 * 0.02562 * 21 20 19 23 23 H 0.96999 * 120.00367 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.46786 * 59.99863 * 9 7 2 25 25 H 1.09001 * 109.47322 * 300.00484 * 9 7 2 26 26 H 1.09001 * 109.46586 * 59.99781 * 10 9 7 27 27 H 1.08992 * 109.46815 * 300.00346 * 10 9 7 28 28 H 1.09002 * 109.47250 * 60.00135 * 14 11 10 29 29 H 1.08996 * 109.47189 * 300.00456 * 14 11 10 30 30 H 1.08009 * 119.99800 * 298.55307 * 15 14 11 31 31 H 1.08006 * 119.99788 * 172.93734 * 16 15 14 32 32 H 1.08004 * 120.07340 * 359.94874 * 18 17 16 33 33 H 1.08008 * 119.92883 * 179.97438 * 19 18 17 34 34 H 1.08006 * 119.85363 * 179.75041 * 20 19 18 35 35 H 1.07998 * 119.93305 * 179.97438 * 21 20 19 36 36 H 1.08006 * 120.06801 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 16 5.8356 -2.6363 -0.0025 12 8 6.2893 -2.0775 1.2228 13 8 6.2873 -2.0784 -1.2288 14 6 6.2104 -4.4111 -0.0029 15 6 7.7043 -4.6091 -0.0035 16 6 8.2897 -5.2404 1.0046 17 6 7.5039 -5.6118 2.2001 18 6 7.6832 -6.8606 2.7962 19 6 6.9470 -7.2010 3.9123 20 6 6.0330 -6.3069 4.4409 21 6 5.8506 -5.0673 3.8547 22 6 6.5798 -4.7151 2.7376 23 1 -0.4850 0.8400 0.0004 24 1 3.8752 -0.6803 0.8889 25 1 3.8746 -0.6799 -0.8911 26 1 3.6579 -3.1504 -0.8907 27 1 3.6586 -3.1500 0.8892 28 1 5.7820 -4.8728 -0.8926 29 1 5.7834 -4.8729 0.8873 30 1 8.2980 -4.2367 -0.8253 31 1 9.3408 -5.4833 0.9522 32 1 8.3964 -7.5594 2.3846 33 1 7.0845 -8.1675 4.3745 34 1 5.4563 -6.5798 5.3124 35 1 5.1353 -4.3739 4.2718 36 1 6.4368 -3.7468 2.2811 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564775025.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:21 Heat of formation + Delta-G solvation = -30.354880 kcal Electronic energy + Delta-G solvation = -19271.635302 eV Core-core repulsion = 16234.590309 eV Total energy + Delta-G solvation = -3037.044992 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.53229 -36.68986 -35.80549 -35.46847 -33.95049 -31.51184 -31.25398 -30.40751 -27.86101 -25.93045 -22.78001 -22.61366 -21.21503 -19.48897 -18.64222 -17.33086 -16.86044 -16.45231 -16.04690 -15.67630 -15.28529 -14.97814 -14.45835 -14.31245 -13.75675 -13.68119 -13.49365 -12.80819 -12.76553 -12.62044 -12.21864 -11.91479 -11.81817 -11.72141 -11.33669 -11.25585 -11.18272 -11.08458 -10.74023 -10.43918 -10.14730 -9.86768 -9.58824 -9.32456 -9.03124 -8.65977 -8.42895 -6.16571 -4.17996 0.17081 0.91056 1.26957 2.13023 3.06955 3.27601 3.34831 3.40000 3.67732 3.85156 4.18396 4.36567 4.43588 4.62105 4.79520 4.87298 4.88464 5.06156 5.15621 5.30140 5.34759 5.40671 5.48172 5.48723 5.57871 5.82094 5.92657 6.12030 6.18664 6.26796 6.37267 6.44950 6.53655 6.83468 6.86716 6.96024 7.54779 8.35945 8.84108 9.43186 10.95723 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.023203 B = 0.004641 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.441428 B = 6032.185222 C = 6753.424888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.869 3.131 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.521 4.521 8 H 0.078 0.922 9 C -0.006 4.006 10 C -0.566 4.566 11 S 2.389 3.611 12 O -0.939 6.939 13 O -0.943 6.943 14 C -0.606 4.606 15 C -0.140 4.140 16 C -0.097 4.097 17 C -0.066 4.066 18 C -0.110 4.110 19 C -0.124 4.124 20 C -0.119 4.119 21 C -0.116 4.116 22 C -0.129 4.129 23 H 0.266 0.734 24 H 0.035 0.965 25 H 0.030 0.970 26 H 0.127 0.873 27 H 0.127 0.873 28 H 0.143 0.857 29 H 0.144 0.856 30 H 0.135 0.865 31 H 0.132 0.868 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.130 0.870 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.076 -14.425 4.765 21.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.695 3.305 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.560 4.560 8 H 0.096 0.904 9 C -0.045 4.045 10 C -0.699 4.699 11 S 2.576 3.424 12 O -0.936 6.936 13 O -0.940 6.940 14 C -0.731 4.731 15 C -0.159 4.159 16 C -0.117 4.117 17 C -0.066 4.066 18 C -0.128 4.128 19 C -0.142 4.142 20 C -0.137 4.137 21 C -0.134 4.134 22 C -0.146 4.146 23 H 0.076 0.924 24 H 0.053 0.947 25 H 0.048 0.952 26 H 0.145 0.855 27 H 0.145 0.855 28 H 0.161 0.839 29 H 0.162 0.838 30 H 0.153 0.847 31 H 0.150 0.850 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.148 0.852 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 15.528 -13.603 4.753 21.184 hybrid contribution -0.231 0.051 -0.042 0.241 sum 15.297 -13.552 4.710 20.972 Atomic orbital electron populations 1.69878 1.06213 1.27275 1.50012 1.24967 0.94800 0.99155 0.94093 0.86931 0.80752 0.83667 0.79174 1.19659 1.20772 1.18519 1.20858 0.87803 0.94934 1.52367 0.90395 1.19434 0.99604 0.87299 0.98184 1.30067 1.19187 1.09650 1.10964 1.09011 0.80427 0.77432 0.75573 1.93486 1.80485 1.74318 1.45270 1.93541 1.80443 1.74681 1.45307 1.29837 1.02646 1.27825 1.12754 1.22584 0.92334 1.00887 1.00081 1.21781 0.99338 0.98154 0.92450 1.19114 0.97003 0.94609 0.95883 1.21225 0.99886 0.95764 0.95952 1.21088 0.96923 0.99648 0.96519 1.21284 0.98286 0.94090 1.00019 1.21266 0.99675 0.96786 0.95672 1.22115 0.95303 1.00647 0.96578 0.92369 0.94669 0.95184 0.85470 0.85495 0.83897 0.83821 0.84711 0.85015 0.85928 0.86022 0.85941 0.85193 0.83691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.99 13.96 55.43 0.77 -26.22 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 3 Si 0.87 21.51 27.47 -169.99 -4.67 16.84 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 7 C -0.52 -14.45 9.66 -34.44 -0.33 -14.78 16 8 H 0.08 2.26 7.99 -52.48 -0.42 1.84 16 9 C -0.01 -0.15 4.05 -27.88 -0.11 -0.26 16 10 C -0.57 -10.01 5.74 37.16 0.21 -9.80 16 11 S 2.39 38.67 4.56 -107.50 -0.49 38.18 16 12 O -0.94 -17.37 15.55 -57.83 -0.90 -18.27 16 13 O -0.94 -18.01 18.10 -57.83 -1.05 -19.06 16 14 C -0.61 -7.16 5.27 36.00 0.19 -6.97 16 15 C -0.14 -1.60 9.47 -36.22 -0.34 -1.94 16 16 C -0.10 -1.04 9.77 -37.58 -0.37 -1.41 16 17 C -0.07 -0.78 5.10 -105.02 -0.54 -1.32 16 18 C -0.11 -1.11 9.79 -39.20 -0.38 -1.49 16 19 C -0.12 -1.17 10.03 -39.64 -0.40 -1.57 16 20 C -0.12 -1.21 10.04 -39.51 -0.40 -1.60 16 21 C -0.12 -1.38 10.03 -39.64 -0.40 -1.78 16 22 C -0.13 -1.70 7.27 -39.20 -0.29 -1.98 16 23 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 24 H 0.04 0.83 7.20 -51.92 -0.37 0.46 16 25 H 0.03 0.71 7.57 -51.93 -0.39 0.31 16 26 H 0.13 1.98 8.14 -51.92 -0.42 1.56 16 27 H 0.13 1.97 8.14 -51.93 -0.42 1.55 16 28 H 0.14 1.31 8.14 -51.92 -0.42 0.88 16 29 H 0.14 1.62 4.58 -51.93 -0.24 1.38 16 30 H 0.14 1.33 8.06 -52.48 -0.42 0.90 16 31 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 32 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 33 H 0.12 0.85 8.06 -52.48 -0.42 0.42 16 34 H 0.12 0.97 8.06 -52.48 -0.42 0.54 16 35 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 36 H 0.15 2.08 3.77 -52.48 -0.20 1.89 16 LS Contribution 314.28 15.07 4.74 4.74 Total: -1.00 -34.75 314.28 -9.44 -44.18 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -4.59 Total: 2.53 kcal Atomic # 6 Polarization: -39.68 SS G_CDS: -3.25 Total: -42.92 kcal Atomic # 7 Polarization: -26.99 SS G_CDS: 0.77 Total: -26.22 kcal Atomic # 8 Polarization: -35.38 SS G_CDS: -1.95 Total: -37.33 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Atomic # 16 Polarization: 38.67 SS G_CDS: -0.49 Total: 38.18 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -34.75 -9.44 -44.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564775025.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.829 kcal (2) G-P(sol) polarization free energy of solvation -34.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds