Wall clock time and date at job start Tue Mar 31 2020 01:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34772 * 117.00261 * 2 1 4 4 O 1.21523 * 119.99750 * 0.02562 * 3 2 1 5 5 C 1.47332 * 120.00191 * 179.97438 * 3 2 1 6 6 C 1.39895 * 120.06932 * 180.02562 * 5 3 2 7 7 C 1.36592 * 119.92817 * 179.70213 * 6 5 3 8 8 C 1.39316 * 120.07234 * 0.27552 * 7 6 5 9 9 S 1.76203 * 119.93324 * 180.02562 * 8 7 6 10 10 C 1.81397 * 102.99974 * 186.47708 * 9 8 7 11 11 H 1.08998 * 109.47283 * 309.49171 * 10 9 8 12 12 C 1.52994 * 109.47034 * 69.49431 * 10 9 8 13 13 C 1.53005 * 109.46833 * 189.49069 * 10 9 8 14 14 C 1.50700 * 109.46878 * 65.00405 * 13 10 9 15 15 H 1.07998 * 120.00663 * 359.97438 * 14 13 10 16 16 C 1.37878 * 120.00030 * 179.97438 * 14 13 10 17 17 N 1.31523 * 119.99926 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00173 * 179.97438 * 16 14 13 19 19 H 1.48492 * 109.47007 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.46931 * 119.99953 * 18 16 14 21 21 H 1.48506 * 109.46984 * 239.99509 * 18 16 14 22 22 C 1.39324 * 120.13780 * 0.02562 * 8 7 6 23 23 C 1.36582 * 120.06940 * 359.97438 * 22 8 7 24 24 H 1.08997 * 109.47199 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47174 * 300.00096 * 1 2 3 26 26 H 1.08997 * 109.47170 * 59.99640 * 1 2 3 27 27 H 1.07999 * 120.03756 * 359.97438 * 6 5 3 28 28 H 1.08003 * 119.95983 * 180.30318 * 7 6 5 29 29 H 1.09003 * 109.47172 * 185.64074 * 12 10 9 30 30 H 1.09000 * 109.47598 * 305.63995 * 12 10 9 31 31 H 1.09006 * 109.47573 * 65.64421 * 12 10 9 32 32 H 1.08995 * 109.47094 * 184.99714 * 13 10 9 33 33 H 1.08996 * 109.47054 * 305.00170 * 13 10 9 34 34 H 0.96990 * 119.99870 * 180.02562 * 17 16 14 35 35 H 1.08001 * 119.96499 * 180.02562 * 22 8 7 36 36 H 1.07998 * 120.03898 * 180.02562 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2008 0.0000 4 8 1.4020 2.2200 0.0005 5 6 3.5352 1.2779 0.0006 6 6 4.1718 2.5236 0.0011 7 6 5.5360 2.5917 0.0078 8 6 6.2934 1.4224 0.0083 9 16 8.0530 1.5145 0.0176 10 6 8.5534 -0.2173 -0.1843 11 1 8.0260 -0.8350 0.5427 12 6 8.2073 -0.6866 -1.5988 13 6 10.0618 -0.3417 0.0395 14 6 10.3875 0.0032 1.4699 15 1 9.5978 0.2835 2.1511 16 6 11.6938 -0.0391 1.9090 17 7 12.6556 -0.3810 1.0796 18 14 12.0977 0.3891 3.6818 19 1 10.8479 0.7381 4.4037 20 1 12.7402 -0.7774 4.3388 21 1 13.0263 1.5477 3.7120 22 6 5.6624 0.1803 0.0014 23 6 4.2986 0.1055 -0.0053 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 3.5853 3.4304 0.0007 28 1 6.0280 3.5531 0.0132 29 1 8.4152 -1.7528 -1.6889 30 1 7.1503 -0.5048 -1.7935 31 1 8.8098 -0.1366 -2.3217 32 1 10.3769 -1.3642 -0.1684 33 1 10.5857 0.3427 -0.6277 34 1 13.5745 -0.4111 1.3885 35 1 6.2522 -0.7245 0.0022 36 1 3.8100 -0.8576 -0.0102 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572730127.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:32 Heat of formation + Delta-G solvation = -74.267408 kcal Electronic energy + Delta-G solvation = -18627.258401 eV Core-core repulsion = 15588.309219 eV Total energy + Delta-G solvation = -3038.949182 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.59074 -38.72284 -36.49733 -34.83478 -32.34893 -31.50638 -31.03436 -27.95205 -27.55797 -24.30090 -23.44318 -22.75926 -21.02842 -20.58938 -18.19279 -17.36952 -16.84679 -16.46314 -16.45106 -15.37619 -14.99565 -14.64099 -14.52010 -13.93395 -13.69362 -13.57233 -13.06002 -12.92882 -12.64665 -12.42198 -12.27675 -11.90661 -11.67946 -11.18586 -11.03198 -10.98220 -10.91665 -10.71967 -10.57851 -10.39577 -9.71660 -9.62361 -9.42917 -9.21300 -9.11176 -8.46407 -7.01225 -6.10996 -4.13484 0.58815 1.42212 1.95754 2.44899 2.58823 2.97092 3.27196 3.35372 3.40319 3.74602 4.39310 4.65957 4.81002 4.88168 4.91506 4.95800 5.26674 5.27094 5.31601 5.45504 5.48113 5.55603 5.59936 5.82880 5.96839 6.05185 6.19187 6.24663 6.30286 6.35128 6.45513 6.54511 6.77216 7.39090 7.45834 7.64545 7.85787 8.20825 8.91363 9.51508 11.00132 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.029547 B = 0.003495 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.404669 B = 8008.561114 C = 8177.865780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.357 6.357 3 C 0.514 3.486 4 O -0.516 6.516 5 C -0.163 4.163 6 C -0.031 4.031 7 C -0.128 4.128 8 C -0.043 4.043 9 S -0.059 6.059 10 C -0.071 4.071 11 H 0.086 0.914 12 C -0.151 4.151 13 C 0.039 3.961 14 C -0.522 4.522 15 H 0.064 0.936 16 C 0.060 3.940 17 N -0.894 5.894 18 Si 0.892 3.108 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.283 1.283 22 C -0.159 4.159 23 C -0.036 4.036 24 H 0.101 0.899 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.136 0.864 28 H 0.135 0.865 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.038 0.962 33 H 0.028 0.972 34 H 0.262 0.738 35 H 0.137 0.863 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.653 0.283 -4.079 19.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.360 3.640 4 O -0.406 6.406 5 C -0.168 4.168 6 C -0.051 4.051 7 C -0.153 4.153 8 C -0.158 4.158 9 S 0.193 5.807 10 C -0.199 4.199 11 H 0.104 0.896 12 C -0.210 4.210 13 C 0.001 3.999 14 C -0.560 4.560 15 H 0.082 0.918 16 C -0.142 4.142 17 N -0.533 5.533 18 Si 0.720 3.280 19 H -0.195 1.195 20 H -0.210 1.210 21 H -0.209 1.209 22 C -0.183 4.183 23 C -0.056 4.056 24 H 0.119 0.881 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.154 0.846 28 H 0.153 0.847 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.056 0.944 33 H 0.046 0.954 34 H 0.071 0.929 35 H 0.154 0.846 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -17.736 1.471 -3.976 18.236 hybrid contribution -0.689 -0.877 0.897 1.431 sum -18.425 0.594 -3.079 18.690 Atomic orbital electron populations 1.23246 0.76287 1.03609 1.02519 1.86567 1.23321 1.32925 1.84537 1.21194 0.89228 0.81215 0.72314 1.90818 1.66954 1.36016 1.46827 1.18930 0.88478 0.95097 1.14338 1.20842 0.94122 0.96500 0.93649 1.20477 0.92872 0.97527 1.04377 1.22853 1.00560 0.96060 0.96358 1.86081 0.92813 1.15561 1.86201 1.23836 1.05180 0.92051 0.98836 0.89627 1.22193 1.00885 1.01790 0.96087 1.19053 0.84387 0.98461 0.98040 1.21259 0.93061 1.46237 0.95476 0.91825 1.24986 0.96408 0.95062 0.97700 1.69959 1.00260 1.48116 1.34975 0.86519 0.78560 0.78074 0.84859 1.19508 1.21017 1.20917 1.21085 0.94928 0.97187 1.05133 1.21051 0.93478 0.97705 0.93377 0.88091 0.91925 0.91934 0.84609 0.84689 0.91714 0.93042 0.91692 0.94372 0.95388 0.92881 0.84555 0.84689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.57 101.05 1.07 1.36 16 2 O -0.36 -4.07 9.80 -40.69 -0.40 -4.47 16 3 C 0.51 6.88 7.88 34.43 0.27 7.15 16 4 O -0.52 -7.87 16.13 -19.28 -0.31 -8.18 16 5 C -0.16 -2.17 5.88 -104.95 -0.62 -2.79 16 6 C -0.03 -0.40 9.54 -39.56 -0.38 -0.78 16 7 C -0.13 -1.76 9.73 -39.78 -0.39 -2.15 16 8 C -0.04 -0.67 5.98 -38.78 -0.23 -0.90 16 9 S -0.06 -1.07 20.61 -107.50 -2.22 -3.29 16 10 C -0.07 -1.32 1.98 -26.73 -0.05 -1.37 16 11 H 0.09 1.57 6.84 -51.92 -0.36 1.21 16 12 C -0.15 -2.32 8.70 37.15 0.32 -2.00 16 13 C 0.04 0.92 4.45 -27.88 -0.12 0.80 16 14 C -0.52 -13.84 8.53 -34.44 -0.29 -14.14 16 15 H 0.06 1.67 7.60 -52.49 -0.40 1.28 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -25.77 13.29 55.43 0.74 -25.03 16 18 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 19 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 22 C -0.16 -2.23 7.95 -39.78 -0.32 -2.55 16 23 C -0.04 -0.45 9.56 -39.56 -0.38 -0.83 16 24 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.14 1.61 7.64 -52.49 -0.40 1.21 16 28 H 0.14 1.67 8.06 -52.48 -0.42 1.25 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.05 0.71 6.08 -51.93 -0.32 0.39 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.14 1.86 4.99 -52.49 -0.26 1.60 16 36 H 0.14 1.43 7.60 -52.49 -0.40 1.03 16 LS Contribution 321.01 15.07 4.84 4.84 Total: -1.00 -29.98 321.01 -8.23 -38.22 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -4.65 Total: -1.59 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: -1.21 Total: -16.63 kcal Atomic # 7 Polarization: -25.77 SS G_CDS: 0.74 Total: -25.03 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: -0.71 Total: -12.65 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: -1.07 SS G_CDS: -2.22 Total: -3.29 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.98 -8.23 -38.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572730127.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.049 kcal (2) G-P(sol) polarization free energy of solvation -29.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds