Wall clock time and date at job start Tue Mar 31 2020 01:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34772 * 117.00261 * 2 1 4 4 O 1.21523 * 119.99750 * 0.02562 * 3 2 1 5 5 C 1.47332 * 120.00191 * 179.97438 * 3 2 1 6 6 C 1.39895 * 120.06932 * 180.02562 * 5 3 2 7 7 C 1.36592 * 119.92817 * 179.70213 * 6 5 3 8 8 C 1.39316 * 120.07234 * 0.27552 * 7 6 5 9 9 S 1.76203 * 119.93324 * 180.02562 * 8 7 6 10 10 C 1.81397 * 102.99974 * 186.47708 * 9 8 7 11 11 H 1.08998 * 109.47283 * 309.49171 * 10 9 8 12 12 C 1.52994 * 109.47034 * 69.49431 * 10 9 8 13 13 C 1.53005 * 109.46833 * 189.49069 * 10 9 8 14 14 C 1.50700 * 109.46878 * 65.00405 * 13 10 9 15 15 H 1.07998 * 120.00663 * 359.97438 * 14 13 10 16 16 C 1.37878 * 120.00030 * 179.97438 * 14 13 10 17 17 N 1.31523 * 119.99926 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00173 * 179.97438 * 16 14 13 19 19 H 1.48492 * 109.47007 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.46931 * 119.99953 * 18 16 14 21 21 H 1.48506 * 109.46984 * 239.99509 * 18 16 14 22 22 C 1.39324 * 120.13780 * 0.02562 * 8 7 6 23 23 C 1.36582 * 120.06940 * 359.97438 * 22 8 7 24 24 H 1.08997 * 109.47199 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47174 * 300.00096 * 1 2 3 26 26 H 1.08997 * 109.47170 * 59.99640 * 1 2 3 27 27 H 1.07999 * 120.03756 * 359.97438 * 6 5 3 28 28 H 1.08003 * 119.95983 * 180.30318 * 7 6 5 29 29 H 1.09003 * 109.47172 * 185.64074 * 12 10 9 30 30 H 1.09000 * 109.47598 * 305.63995 * 12 10 9 31 31 H 1.09006 * 109.47573 * 65.64421 * 12 10 9 32 32 H 1.08995 * 109.47094 * 184.99714 * 13 10 9 33 33 H 1.08996 * 109.47054 * 305.00170 * 13 10 9 34 34 H 0.96990 * 119.99870 * 180.02562 * 17 16 14 35 35 H 1.08001 * 119.96499 * 180.02562 * 22 8 7 36 36 H 1.07998 * 120.03898 * 180.02562 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2008 0.0000 4 8 1.4020 2.2200 0.0005 5 6 3.5352 1.2779 0.0006 6 6 4.1718 2.5236 0.0011 7 6 5.5360 2.5917 0.0078 8 6 6.2934 1.4224 0.0083 9 16 8.0530 1.5145 0.0176 10 6 8.5534 -0.2173 -0.1843 11 1 8.0260 -0.8350 0.5427 12 6 8.2073 -0.6866 -1.5988 13 6 10.0618 -0.3417 0.0395 14 6 10.3875 0.0032 1.4699 15 1 9.5978 0.2835 2.1511 16 6 11.6938 -0.0391 1.9090 17 7 12.6556 -0.3810 1.0796 18 14 12.0977 0.3891 3.6818 19 1 10.8479 0.7381 4.4037 20 1 12.7402 -0.7774 4.3388 21 1 13.0263 1.5477 3.7120 22 6 5.6624 0.1803 0.0014 23 6 4.2986 0.1055 -0.0053 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 3.5853 3.4304 0.0007 28 1 6.0280 3.5531 0.0132 29 1 8.4152 -1.7528 -1.6889 30 1 7.1503 -0.5048 -1.7935 31 1 8.8098 -0.1366 -2.3217 32 1 10.3769 -1.3642 -0.1684 33 1 10.5857 0.3427 -0.6277 34 1 13.5745 -0.4111 1.3885 35 1 6.2522 -0.7245 0.0022 36 1 3.8100 -0.8576 -0.0102 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572730127.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:31 Heat of formation + Delta-G solvation = -89.019431 kcal Electronic energy + Delta-G solvation = -18627.898097 eV Core-core repulsion = 15588.309219 eV Total energy + Delta-G solvation = -3039.588878 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.58915 -39.77546 -37.47689 -36.53297 -34.19913 -32.59735 -32.18844 -29.39267 -28.62948 -25.34341 -25.25849 -23.88218 -22.15939 -22.01603 -19.21942 -18.55880 -18.42536 -17.93815 -17.37041 -16.76443 -16.57331 -15.96645 -15.69193 -15.05843 -14.70810 -14.62797 -14.51649 -14.21202 -13.84370 -13.78412 -13.53067 -13.29224 -13.01047 -12.75531 -12.57913 -12.37869 -12.26734 -12.10101 -11.80835 -11.63133 -11.48258 -11.24222 -10.86880 -10.77002 -10.53217 -10.16486 -8.37584 -8.20282 -6.28274 -0.49671 0.36634 0.61192 1.39074 1.39872 1.41984 1.53794 1.60355 1.71128 2.41609 2.68021 3.15475 3.66562 3.82395 3.88973 4.03597 4.15361 4.26135 4.32227 4.35566 4.38181 4.50235 4.55774 4.71981 4.86082 4.94431 4.97732 5.07571 5.19817 5.21566 5.24795 5.34091 5.39460 5.50308 5.70898 5.77850 6.17730 6.65933 6.84532 7.40045 8.91504 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.029547 B = 0.003495 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.404669 B = 8008.561114 C = 8177.865780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.517 3.483 4 O -0.539 6.539 5 C -0.164 4.164 6 C -0.031 4.031 7 C -0.126 4.126 8 C -0.051 4.051 9 S -0.107 6.107 10 C -0.059 4.059 11 H 0.089 0.911 12 C -0.142 4.142 13 C 0.044 3.956 14 C -0.528 4.528 15 H 0.063 0.937 16 C 0.006 3.994 17 N -0.931 5.931 18 Si 0.955 3.045 19 H -0.264 1.264 20 H -0.278 1.278 21 H -0.282 1.282 22 C -0.160 4.160 23 C -0.027 4.027 24 H 0.134 0.866 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.148 0.852 28 H 0.145 0.855 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.019 0.981 33 H 0.001 0.999 34 H 0.263 0.737 35 H 0.141 0.859 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.965 -0.158 -3.616 21.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.274 6.274 3 C 0.364 3.636 4 O -0.431 6.431 5 C -0.169 4.169 6 C -0.051 4.051 7 C -0.150 4.150 8 C -0.166 4.166 9 S 0.143 5.857 10 C -0.187 4.187 11 H 0.107 0.893 12 C -0.201 4.201 13 C 0.006 3.994 14 C -0.566 4.566 15 H 0.081 0.919 16 C -0.192 4.192 17 N -0.572 5.572 18 Si 0.780 3.220 19 H -0.188 1.188 20 H -0.204 1.204 21 H -0.208 1.208 22 C -0.184 4.184 23 C -0.048 4.048 24 H 0.152 0.848 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.166 0.834 28 H 0.163 0.837 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.038 0.962 33 H 0.019 0.981 34 H 0.072 0.928 35 H 0.159 0.841 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -20.089 1.012 -3.512 20.418 hybrid contribution -0.168 -0.744 0.727 1.054 sum -20.257 0.267 -2.786 20.449 Atomic orbital electron populations 1.23591 0.74255 1.05893 1.02657 1.86551 1.25280 1.31639 1.83888 1.21165 0.89150 0.81501 0.71774 1.90813 1.67410 1.36888 1.47952 1.19140 0.88911 0.95424 1.13392 1.20985 0.93785 0.97175 0.93151 1.20613 0.93124 0.97589 1.03694 1.22701 0.98144 0.97300 0.98411 1.86102 0.96321 1.15317 1.87938 1.23561 1.01529 0.92622 1.01010 0.89264 1.22122 1.02031 1.02257 0.93657 1.18843 0.87931 0.96442 0.96157 1.21608 0.93059 1.45250 0.96724 0.91878 1.25813 0.96527 0.95240 1.01666 1.70071 1.00608 1.49625 1.36873 0.85540 0.78404 0.77831 0.80203 1.18793 1.20420 1.20770 1.21190 0.95581 0.96780 1.04883 1.21244 0.92750 0.98612 0.92155 0.84794 0.91895 0.91759 0.83405 0.83707 0.90527 0.90924 0.92295 0.96242 0.98108 0.92822 0.84135 0.82241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.57 113.37 1.20 1.58 16 2 O -0.36 -7.10 9.80 -56.83 -0.56 -7.66 16 3 C 0.52 12.60 7.88 70.21 0.55 13.15 16 4 O -0.54 -15.42 16.13 19.76 0.32 -15.10 16 5 C -0.16 -3.96 5.88 -20.08 -0.12 -4.08 16 6 C -0.03 -0.74 9.54 22.29 0.21 -0.53 16 7 C -0.13 -3.28 9.73 22.14 0.22 -3.07 16 8 C -0.05 -1.50 5.98 22.79 0.14 -1.37 16 9 S -0.11 -3.89 20.61 -56.49 -1.16 -5.05 16 10 C -0.06 -2.19 1.98 30.59 0.06 -2.13 16 11 H 0.09 3.22 6.84 -2.39 -0.02 3.20 16 12 C -0.14 -4.24 8.70 71.98 0.63 -3.62 16 13 C 0.04 2.17 4.45 29.85 0.13 2.30 16 14 C -0.53 -28.43 8.53 25.60 0.22 -28.21 16 15 H 0.06 3.34 7.60 -2.91 -0.02 3.31 16 16 C 0.01 0.31 5.46 84.65 0.46 0.77 16 17 N -0.93 -54.83 13.29 21.45 0.28 -54.54 16 18 Si 0.95 43.67 29.54 68.60 2.03 45.69 16 19 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 20 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 21 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 22 C -0.16 -4.15 7.95 22.14 0.18 -3.98 16 23 C -0.03 -0.62 9.56 22.29 0.21 -0.40 16 24 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.15 3.21 7.64 -2.91 -0.02 3.19 16 28 H 0.15 3.42 8.06 -2.91 -0.02 3.39 16 29 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.07 1.86 6.08 -2.39 -0.01 1.84 16 31 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 32 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 34 H 0.26 14.62 8.31 -92.72 -0.77 13.85 16 35 H 0.14 3.52 4.99 -2.91 -0.01 3.51 16 36 H 0.16 2.79 7.60 -2.91 -0.02 2.76 16 Total: -1.00 -64.58 321.01 6.07 -58.51 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: 1.08 Total: 7.75 kcal Atomic # 6 Polarization: -33.67 SS G_CDS: 4.09 Total: -29.59 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: 0.28 Total: -54.54 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.24 Total: -22.76 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: -3.89 SS G_CDS: -1.16 Total: -5.05 kcal Total: -64.58 6.07 -58.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572730127.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.509 kcal (2) G-P(sol) polarization free energy of solvation -64.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds