Wall clock time and date at job start Tue Mar 31 2020 01:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34770 * 117.00013 * 2 1 4 4 O 1.21521 * 119.99857 * 0.02562 * 3 2 1 5 5 C 1.47337 * 120.00091 * 179.97438 * 3 2 1 6 6 C 1.39895 * 120.06951 * 180.02562 * 5 3 2 7 7 C 1.36592 * 119.92834 * 180.02562 * 6 5 3 8 8 C 1.39316 * 120.07199 * 359.97438 * 7 6 5 9 9 S 1.76197 * 119.93055 * 179.72754 * 8 7 6 10 10 C 1.81400 * 103.00374 * 95.20221 * 9 8 7 11 11 H 1.08994 * 109.47200 * 52.58672 * 10 9 8 12 12 C 1.53006 * 109.46596 * 292.59256 * 10 9 8 13 13 C 1.52997 * 109.47526 * 172.59237 * 10 9 8 14 14 C 1.50703 * 109.46735 * 295.00105 * 13 10 9 15 15 H 1.07998 * 119.99970 * 359.97438 * 14 13 10 16 16 C 1.37880 * 119.99906 * 180.02562 * 14 13 10 17 17 N 1.31508 * 119.99999 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 119.99628 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47213 * 90.00493 * 18 16 14 20 20 H 1.48498 * 109.46765 * 209.99898 * 18 16 14 21 21 H 1.48495 * 109.47435 * 330.00042 * 18 16 14 22 22 C 1.39328 * 120.13839 * 359.97438 * 8 7 6 23 23 C 1.36585 * 120.06794 * 0.02562 * 22 8 7 24 24 H 1.08997 * 109.47478 * 300.00223 * 1 2 3 25 25 H 1.09000 * 109.47031 * 60.00148 * 1 2 3 26 26 H 1.09001 * 109.47036 * 179.97438 * 1 2 3 27 27 H 1.08000 * 120.03657 * 0.03604 * 6 5 3 28 28 H 1.08000 * 119.96169 * 179.97438 * 7 6 5 29 29 H 1.09003 * 109.46876 * 305.93977 * 12 10 9 30 30 H 1.08994 * 109.47084 * 65.94264 * 12 10 9 31 31 H 1.09008 * 109.46878 * 185.94495 * 12 10 9 32 32 H 1.09000 * 109.46910 * 54.99391 * 13 10 9 33 33 H 1.08993 * 109.47391 * 174.99948 * 13 10 9 34 34 H 0.97001 * 119.99766 * 180.02562 * 17 16 14 35 35 H 1.07999 * 119.96403 * 179.97438 * 22 8 7 36 36 H 1.08000 * 120.03383 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4019 2.2200 0.0005 5 6 3.5352 1.2779 0.0006 6 6 4.1718 2.5237 0.0011 7 6 5.5360 2.5918 0.0011 8 6 6.2934 1.4225 0.0011 9 16 8.0529 1.5147 -0.0062 10 6 8.4759 1.3806 1.7527 11 1 7.9967 0.4976 2.1754 12 6 7.9877 2.6286 2.4912 13 6 9.9935 1.2592 1.9046 14 6 10.4587 -0.0325 1.2830 15 1 9.7434 -0.7001 0.8258 16 6 11.7974 -0.3624 1.2989 17 7 12.2032 -1.4897 0.7569 18 14 13.0344 0.7922 2.0903 19 1 13.1869 0.4455 3.5261 20 1 14.3456 0.6568 1.4065 21 1 12.5541 2.1920 1.9673 22 6 5.6623 0.1803 0.0016 23 6 4.2985 0.1055 0.0017 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.5852 3.4305 0.0017 28 1 6.0280 3.5532 0.0011 29 1 8.3840 3.5184 2.0021 30 1 6.8983 2.6586 2.4730 31 1 8.3332 2.5977 3.5246 32 1 10.4770 2.0981 1.4039 33 1 10.2547 1.2680 2.9627 34 1 13.1450 -1.7219 0.7685 35 1 6.2522 -0.7244 0.0012 36 1 3.8100 -0.8576 0.0017 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572730128.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:34 Heat of formation + Delta-G solvation = -84.693076 kcal Electronic energy + Delta-G solvation = -18603.943564 eV Core-core repulsion = 15564.542291 eV Total energy + Delta-G solvation = -3039.401273 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.68429 -39.82691 -37.55305 -36.41546 -34.11816 -32.67483 -32.31228 -29.84991 -28.66647 -25.35744 -24.93644 -23.70839 -22.33056 -21.94768 -19.27910 -18.86651 -18.47885 -17.94552 -17.44301 -16.66797 -16.38822 -16.03065 -15.71423 -15.02181 -14.87560 -14.62771 -14.58255 -14.27103 -14.12922 -13.89964 -13.67192 -13.39026 -13.04986 -12.73993 -12.59061 -12.24588 -12.10517 -11.85615 -11.77400 -11.72688 -11.59696 -11.37177 -11.08647 -10.72403 -10.20283 -9.86380 -8.58250 -8.21536 -6.24708 -0.72973 0.30406 0.77828 1.28477 1.37915 1.40775 1.50786 1.61371 1.86838 2.39698 2.65119 3.13373 3.57733 3.76076 3.85951 4.03385 4.20345 4.21993 4.28212 4.31747 4.33100 4.52471 4.53063 4.69687 4.89890 4.92075 4.94474 4.98485 5.09689 5.11756 5.22631 5.24832 5.26991 5.39884 5.63025 5.65401 6.33662 6.56129 6.82446 7.37521 8.94068 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.037549 B = 0.003449 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.508199 B = 8117.409500 C = 8501.842801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.356 6.356 3 C 0.515 3.485 4 O -0.530 6.530 5 C -0.126 4.126 6 C -0.057 4.057 7 C -0.086 4.086 8 C -0.081 4.081 9 S -0.174 6.174 10 C -0.038 4.038 11 H 0.070 0.930 12 C -0.138 4.138 13 C 0.005 3.995 14 C -0.517 4.517 15 H 0.044 0.956 16 C 0.006 3.994 17 N -0.950 5.950 18 Si 0.941 3.059 19 H -0.266 1.266 20 H -0.289 1.289 21 H -0.246 1.246 22 C -0.100 4.100 23 C -0.057 4.057 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.134 0.866 27 H 0.153 0.847 28 H 0.155 0.845 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.025 0.975 33 H 0.040 0.960 34 H 0.264 0.736 35 H 0.134 0.866 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.875 6.915 0.802 22.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.272 6.272 3 C 0.361 3.639 4 O -0.421 6.421 5 C -0.127 4.127 6 C -0.077 4.077 7 C -0.106 4.106 8 C -0.193 4.193 9 S 0.061 5.939 10 C -0.166 4.166 11 H 0.089 0.911 12 C -0.197 4.197 13 C -0.034 4.034 14 C -0.555 4.555 15 H 0.062 0.938 16 C -0.191 4.191 17 N -0.591 5.591 18 Si 0.765 3.235 19 H -0.191 1.191 20 H -0.215 1.215 21 H -0.169 1.169 22 C -0.121 4.121 23 C -0.076 4.076 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.152 0.848 27 H 0.171 0.829 28 H 0.173 0.827 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.043 0.957 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.152 0.848 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -20.208 7.199 -0.105 21.453 hybrid contribution -0.076 -0.268 1.013 1.050 sum -20.285 6.931 0.908 21.456 Atomic orbital electron populations 1.23625 0.73982 1.06014 1.02816 1.86563 1.25506 1.31502 1.83678 1.21151 0.89093 0.81648 0.71985 1.90828 1.67291 1.36788 1.47221 1.19368 0.89124 0.95513 1.08690 1.21176 0.94279 0.97171 0.95055 1.21469 0.93058 0.98424 0.97664 1.22504 0.97984 0.96359 1.02416 1.86112 0.97276 1.96230 1.14326 1.23233 1.00275 1.01339 0.91787 0.91110 1.22099 1.01060 0.95966 1.00598 1.19424 0.90532 0.96122 0.97298 1.21393 0.93309 1.04568 1.36244 0.93812 1.25911 1.00700 0.96608 0.95868 1.70061 1.16340 1.25324 1.47406 0.85793 0.78017 0.80761 0.78936 1.19072 1.21527 1.16946 1.21507 0.95026 0.97478 0.98092 1.21366 0.92909 0.98853 0.94509 0.91638 0.91635 0.84793 0.82911 0.82740 0.91035 0.91893 0.90750 0.95673 0.94153 0.92746 0.84770 0.82196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.57 113.37 1.20 1.55 16 2 O -0.36 -6.85 9.80 -56.81 -0.56 -7.41 16 3 C 0.51 11.93 7.88 70.22 0.55 12.49 16 4 O -0.53 -14.32 16.13 19.77 0.32 -14.01 16 5 C -0.13 -2.90 5.88 -20.08 -0.12 -3.02 16 6 C -0.06 -1.27 9.54 22.29 0.21 -1.06 16 7 C -0.09 -2.07 9.40 22.14 0.21 -1.86 16 8 C -0.08 -2.39 5.34 22.79 0.12 -2.27 16 9 S -0.17 -6.46 20.39 -56.49 -1.15 -7.61 16 10 C -0.04 -1.43 2.73 30.60 0.08 -1.35 16 11 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 12 C -0.14 -3.88 9.06 71.98 0.65 -3.23 16 13 C 0.00 0.21 3.52 29.85 0.10 0.31 16 14 C -0.52 -28.82 9.09 25.60 0.23 -28.59 16 15 H 0.04 2.70 7.84 -2.91 -0.02 2.68 16 16 C 0.01 0.33 5.47 84.66 0.46 0.79 16 17 N -0.95 -59.27 13.96 21.45 0.30 -58.97 16 18 Si 0.94 43.45 27.47 68.60 1.88 45.33 16 19 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 20 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 21 H -0.25 -10.50 6.54 99.48 0.65 -9.84 16 22 C -0.10 -2.76 9.73 22.15 0.22 -2.54 16 23 C -0.06 -1.28 9.56 22.29 0.21 -1.07 16 24 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.15 2.96 7.64 -2.91 -0.02 2.94 16 28 H 0.15 3.22 8.06 -2.91 -0.02 3.19 16 29 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.06 1.57 7.57 -2.39 -0.02 1.55 16 31 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 32 H 0.02 1.13 7.20 -2.39 -0.02 1.12 16 33 H 0.04 1.72 7.57 -2.39 -0.02 1.70 16 34 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 35 H 0.13 3.86 8.06 -2.91 -0.02 3.83 16 36 H 0.16 2.91 7.60 -2.91 -0.02 2.89 16 Total: -1.00 -68.53 324.94 5.94 -62.59 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: 1.01 Total: 9.91 kcal Atomic # 6 Polarization: -33.99 SS G_CDS: 4.14 Total: -29.85 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: 0.30 Total: -58.97 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.24 Total: -21.41 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 1.88 Total: 45.33 kcal Atomic # 16 Polarization: -6.46 SS G_CDS: -1.15 Total: -7.61 kcal Total: -68.53 5.94 -62.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572730128.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.104 kcal (2) G-P(sol) polarization free energy of solvation -68.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds