Wall clock time and date at job start Tue Mar 31 2020 02:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46494 * 119.99742 * 2 1 4 4 C 1.50699 * 109.47415 * 275.00244 * 3 2 1 5 5 H 1.07998 * 119.99822 * 359.97438 * 4 3 2 6 6 C 1.37872 * 120.00227 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00268 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 120.00167 * 180.02562 * 6 4 3 9 9 H 1.48493 * 109.47489 * 59.99701 * 8 6 4 10 10 H 1.48504 * 109.47241 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47032 * 299.99681 * 8 6 4 12 12 S 1.65599 * 119.99877 * 180.02562 * 2 1 3 13 13 O 1.42104 * 106.39905 * 156.45647 * 12 2 1 14 14 O 1.42095 * 106.40452 * 23.53916 * 12 2 1 15 15 N 1.65602 * 107.21657 * 269.99379 * 12 2 1 16 16 C 1.46498 * 119.99612 * 65.28266 * 15 12 2 17 17 H 1.09001 * 110.46150 * 24.02020 * 16 15 12 18 18 C 1.54477 * 110.50913 * 261.41686 * 16 15 12 19 19 O 1.44651 * 104.69715 * 217.47888 * 18 16 15 20 20 C 1.44428 * 105.36758 * 40.33962 * 19 18 16 21 21 C 1.54472 * 104.80637 * 319.57336 * 20 19 18 22 22 H 1.09002 * 110.63353 * 142.68048 * 21 20 19 23 23 O 1.42904 * 110.50870 * 265.33070 * 21 20 19 24 24 H 1.09000 * 109.46746 * 269.99398 * 1 2 3 25 25 H 1.08995 * 109.47307 * 29.99413 * 1 2 3 26 26 H 1.09005 * 109.46998 * 149.99889 * 1 2 3 27 27 H 1.09002 * 109.47321 * 35.00301 * 3 2 1 28 28 H 1.09000 * 109.46992 * 155.00115 * 3 2 1 29 29 H 0.97000 * 120.00438 * 180.02562 * 7 6 4 30 30 H 0.97001 * 119.99942 * 244.99790 * 15 12 2 31 31 H 1.09004 * 110.37118 * 336.20406 * 18 16 15 32 32 H 1.08998 * 110.37606 * 98.54446 * 18 16 15 33 33 H 1.08994 * 110.36952 * 200.73589 * 20 19 18 34 34 H 1.09000 * 110.46161 * 78.45074 * 20 19 18 35 35 H 0.96699 * 114.00142 * 294.63938 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3413 1.7658 -1.4154 5 1 1.9288 1.1935 -2.2332 6 6 3.0005 2.9504 -1.6664 7 7 3.5041 3.6465 -0.6707 8 14 3.1782 3.5669 -3.4207 9 1 1.8317 3.7734 -4.0117 10 1 3.9219 4.8523 -3.4208 11 1 3.9231 2.5647 -4.2245 12 16 2.2930 -1.4341 -0.0006 13 8 3.5759 -1.1565 -0.5451 14 8 1.4114 -2.4063 -0.5455 15 7 2.5382 -1.8593 1.5810 16 6 1.3952 -2.1847 2.4376 17 1 0.5481 -2.5117 1.8346 18 6 1.0046 -0.9673 3.3045 19 8 0.6240 -1.5323 4.5805 20 6 1.5798 -2.5852 4.8332 21 6 1.7808 -3.2727 3.4646 22 1 2.8212 -3.5703 3.3334 23 8 0.9181 -4.4054 3.3419 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3634 0.8900 -0.5137 26 1 -0.3633 -0.8900 -0.5139 27 1 1.6501 2.0043 0.5895 28 1 3.1857 1.1177 0.4343 29 1 3.9676 4.4801 -0.8472 30 1 3.4389 -1.8968 1.9391 31 1 1.8568 -0.2985 3.4254 32 1 0.1649 -0.4361 2.8564 33 1 1.1808 -3.2937 5.5589 34 1 2.5213 -2.1675 5.1899 35 1 1.1156 -5.1194 3.9634 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582857760.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:56 Heat of formation + Delta-G solvation = -192.967996 kcal Electronic energy + Delta-G solvation = -21311.161329 eV Core-core repulsion = 17856.215640 eV Total energy + Delta-G solvation = -3454.945689 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.097 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.82704 -38.32511 -37.24967 -37.04870 -36.89846 -35.85455 -34.49783 -30.22846 -29.72315 -29.24078 -26.78305 -24.21903 -24.08664 -22.33021 -20.72256 -19.16149 -18.46486 -18.38334 -18.31151 -17.64843 -17.06633 -16.91269 -16.32640 -16.21389 -15.73652 -15.09506 -14.95443 -14.28923 -14.12522 -14.06210 -13.89255 -13.65563 -13.38610 -13.28821 -13.18129 -13.04479 -12.93518 -12.77229 -12.48362 -12.37029 -11.98921 -11.94413 -11.76079 -11.24426 -10.99466 -10.58413 -10.43559 -9.80535 -8.19654 -6.30935 -0.40158 1.40465 1.43472 1.50506 1.91279 2.40404 2.54191 2.92367 3.08212 3.12115 3.42432 3.46534 3.74335 3.86166 4.04991 4.08861 4.26099 4.37510 4.53669 4.67587 4.74497 4.78381 4.88622 4.94714 5.09429 5.21655 5.46301 5.63416 5.69988 5.83772 6.04792 6.12810 6.77009 6.85122 7.37903 8.87581 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.030432 B = 0.005262 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.861635 B = 5319.449290 C = 5671.539430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.999 5.999 3 C 0.273 3.727 4 C -0.551 4.551 5 H 0.051 0.949 6 C 0.014 3.986 7 N -0.923 5.923 8 Si 0.954 3.046 9 H -0.265 1.265 10 H -0.277 1.277 11 H -0.278 1.278 12 S 2.799 3.201 13 O -1.004 7.004 14 O -1.008 7.008 15 N -1.106 6.106 16 C 0.116 3.884 17 H 0.104 0.896 18 C 0.030 3.970 19 O -0.385 6.385 20 C 0.014 3.986 21 C 0.071 3.929 22 H 0.101 0.899 23 O -0.572 6.572 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.032 0.968 28 H 0.020 0.980 29 H 0.267 0.733 30 H 0.426 0.574 31 H 0.077 0.923 32 H 0.106 0.894 33 H 0.120 0.880 34 H 0.088 0.912 35 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.908 -12.490 12.495 18.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.841 5.841 3 C 0.149 3.851 4 C -0.590 4.590 5 H 0.069 0.931 6 C -0.185 4.185 7 N -0.563 5.563 8 Si 0.779 3.221 9 H -0.190 1.190 10 H -0.202 1.202 11 H -0.204 1.204 12 S 2.807 3.193 13 O -0.988 6.988 14 O -0.992 6.992 15 N -0.869 5.869 16 C 0.008 3.992 17 H 0.122 0.878 18 C -0.048 4.048 19 O -0.303 6.303 20 C -0.063 4.063 21 C 0.010 3.990 22 H 0.119 0.881 23 O -0.381 6.381 24 H 0.090 0.910 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.050 0.950 28 H 0.038 0.962 29 H 0.076 0.924 30 H 0.262 0.738 31 H 0.095 0.905 32 H 0.124 0.876 33 H 0.138 0.862 34 H 0.106 0.894 35 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -4.176 -12.390 11.376 17.331 hybrid contribution 0.983 0.410 -0.257 1.096 sum -3.193 -11.980 11.120 16.654 Atomic orbital electron populations 1.21650 0.78188 1.03793 1.02456 1.57446 1.15610 1.21900 1.89188 1.18632 0.90539 0.80092 0.95824 1.21825 1.36249 1.06648 0.94327 0.93068 1.25691 0.94821 0.96771 1.01237 1.69986 1.37806 1.15753 1.32726 0.85680 0.78744 0.77552 0.80163 1.18953 1.20170 1.20400 1.01228 0.72207 0.72511 0.73388 1.93592 1.42728 1.85391 1.77100 1.93520 1.67744 1.60308 1.77584 1.55807 1.15071 1.85027 1.30956 1.22106 0.88808 0.94939 0.93372 0.87838 1.24100 1.02282 0.95043 0.83422 1.89183 1.52760 1.51174 1.37208 1.24384 0.94451 0.90487 0.96982 1.23378 0.95205 0.86665 0.93789 0.88108 1.86541 1.58798 1.28946 1.63857 0.90973 0.90711 0.90817 0.94960 0.96192 0.92376 0.73763 0.90459 0.87632 0.86207 0.89438 0.74599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.73 10.68 127.77 1.36 4.10 16 2 N -1.00 -39.71 3.23 -543.23 -1.75 -41.46 16 3 C 0.27 13.35 5.08 85.63 0.43 13.79 16 4 C -0.55 -30.77 9.38 25.60 0.24 -30.53 16 5 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 6 C 0.01 0.81 5.46 84.65 0.46 1.27 16 7 N -0.92 -53.35 13.29 21.45 0.28 -53.07 16 8 Si 0.95 44.31 29.54 68.60 2.03 46.34 16 9 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 10 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 S 2.80 107.28 6.09 -56.49 -0.34 106.94 16 13 O -1.00 -47.31 17.11 -128.00 -2.19 -49.50 16 14 O -1.01 -41.35 16.11 -128.00 -2.06 -43.41 16 15 N -1.11 -29.98 5.54 -165.17 -0.91 -30.90 16 16 C 0.12 2.81 3.61 46.01 0.17 2.98 16 17 H 0.10 2.83 7.42 -2.39 -0.02 2.82 16 18 C 0.03 0.70 7.37 72.48 0.53 1.24 16 19 O -0.38 -8.90 11.65 -148.98 -1.74 -10.63 16 20 C 0.01 0.21 7.38 72.48 0.54 0.75 16 21 C 0.07 1.25 4.25 31.61 0.13 1.38 16 22 H 0.10 1.36 7.80 -2.39 -0.02 1.34 16 23 O -0.57 -10.45 13.30 -148.98 -1.98 -12.43 16 24 H 0.07 1.84 6.46 -2.39 -0.02 1.82 16 25 H 0.07 2.50 8.07 -2.39 -0.02 2.48 16 26 H 0.07 2.29 7.02 -2.38 -0.02 2.28 16 27 H 0.03 1.59 8.11 -2.39 -0.02 1.58 16 28 H 0.02 1.05 7.61 -2.39 -0.02 1.03 16 29 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 30 H 0.43 9.42 8.68 -96.74 -0.84 8.58 16 31 H 0.08 1.79 8.06 -2.39 -0.02 1.77 16 32 H 0.11 2.41 6.46 -2.39 -0.02 2.40 16 33 H 0.12 1.27 8.09 -2.39 -0.02 1.25 16 34 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.40 2.94 9.12 -74.06 -0.68 2.26 16 Total: -1.00 -75.63 307.53 -5.18 -80.82 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -0.39 Total: 12.34 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: 3.87 Total: -5.03 kcal Atomic # 7 Polarization: -123.04 SS G_CDS: -2.38 Total: -125.43 kcal Atomic # 8 Polarization: -108.01 SS G_CDS: -7.97 Total: -115.97 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Atomic # 16 Polarization: 107.28 SS G_CDS: -0.34 Total: 106.94 kcal Total: -75.63 -5.18 -80.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582857760.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.150 kcal (2) G-P(sol) polarization free energy of solvation -75.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds