Wall clock time and date at job start Tue Mar 31 2020 00:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47258 * 2 1 4 4 C 1.36940 * 120.00135 * 275.40328 * 3 2 1 5 5 H 1.08001 * 119.99811 * 34.08357 * 4 3 2 6 6 C 1.38805 * 119.99846 * 214.07934 * 4 3 2 7 7 N 1.31627 * 120.00272 * 22.95775 * 6 4 3 8 8 Si 1.86802 * 119.99900 * 202.95988 * 6 4 3 9 9 H 1.48494 * 109.46946 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47245 * 120.00257 * 8 6 4 11 11 H 1.48502 * 109.47148 * 239.99949 * 8 6 4 12 12 C 1.46496 * 119.99789 * 95.40712 * 3 2 1 13 13 C 1.50700 * 109.46997 * 269.99982 * 12 3 2 14 14 C 1.34000 * 124.92277 * 89.99935 * 13 12 3 15 15 C 1.46661 * 106.10437 * 179.73995 * 14 13 12 16 16 C 1.39506 * 134.66344 * 180.26670 * 15 14 13 17 17 C 1.38381 * 117.98627 * 179.97438 * 16 15 14 18 18 Cl 1.73599 * 120.35915 * 180.02562 * 17 16 15 19 19 C 1.38714 * 119.28467 * 359.97438 * 17 16 15 20 20 N 1.31640 * 121.57821 * 359.97220 * 19 17 16 21 21 C 1.32498 * 121.73069 * 0.05036 * 20 19 17 22 22 O 1.34466 * 124.91956 * 270.19510 * 13 12 3 23 23 H 1.08994 * 109.47259 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46666 * 299.99628 * 1 2 3 25 25 H 1.09004 * 109.47127 * 59.99284 * 1 2 3 26 26 H 1.09004 * 109.47036 * 240.00611 * 2 1 3 27 27 H 1.08998 * 109.47076 * 120.00286 * 2 1 3 28 28 H 0.96997 * 119.99600 * 180.02562 * 7 6 4 29 29 H 1.08997 * 109.47445 * 149.99724 * 12 3 2 30 30 H 1.09002 * 109.47196 * 29.99749 * 12 3 2 31 31 H 1.08001 * 126.94204 * 359.97438 * 14 13 12 32 32 H 1.08002 * 121.00685 * 0.02562 * 16 15 14 33 33 H 1.08003 * 119.20997 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1414 2.0640 -1.1807 5 1 1.4399 1.8869 -1.9825 6 6 3.1676 2.9838 -1.3468 7 7 4.2560 2.8955 -0.6119 8 14 3.0039 4.3471 -2.6133 9 1 1.6949 4.2266 -3.3039 10 1 3.0869 5.6655 -1.9350 11 1 4.1003 4.2326 -3.6084 12 6 2.3753 2.0319 1.2631 13 6 1.1640 2.7265 1.8300 14 6 0.2791 2.1658 2.6655 15 6 -0.7176 3.2013 2.9573 16 6 -1.8689 3.2607 3.7429 17 6 -2.5754 4.4502 3.7708 18 17 -4.0165 4.5926 4.7282 19 6 -2.1192 5.5280 3.0262 20 7 -1.0287 5.4472 2.2932 21 6 -0.3134 4.3338 2.2286 22 8 0.8127 3.9977 1.5679 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5140 -0.8899 26 1 1.8934 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 4.9729 3.5385 -0.7278 29 1 3.1635 2.7634 1.0850 30 1 2.7286 1.2821 1.9709 31 1 0.2983 1.1566 3.0496 32 1 -2.1983 2.4045 4.3128 33 1 -2.6713 6.4559 3.0491 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590638428.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:21 Heat of formation + Delta-G solvation = 57.458254 kcal Electronic energy + Delta-G solvation = -19452.648232 eV Core-core repulsion = 16313.827053 eV Total energy + Delta-G solvation = -3138.821179 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.18901 -38.85755 -36.61395 -36.19345 -33.25735 -32.06809 -31.01902 -30.45452 -28.73359 -26.17196 -24.12301 -23.28712 -22.24988 -21.03627 -20.43042 -17.85515 -17.16429 -16.70323 -16.25069 -15.92270 -15.10097 -14.19644 -13.97063 -13.82177 -13.60271 -13.42377 -13.14125 -12.87280 -12.68104 -12.41624 -11.79077 -11.71511 -11.38243 -11.30854 -11.25353 -10.83175 -10.70199 -10.52570 -10.28262 -10.14893 -9.97282 -9.39865 -8.69364 -8.64345 -7.98249 -6.91971 -6.02540 -3.55916 0.91807 1.08012 1.92621 2.68426 2.79346 3.31943 3.41671 3.44235 3.72157 4.36504 4.55470 4.62736 4.72355 4.94448 5.13778 5.33404 5.43310 5.56775 5.73994 5.89343 5.92342 6.10919 6.13059 6.23563 6.29123 6.44159 6.48248 6.69794 6.75421 7.01766 7.19528 7.51761 7.66612 7.88629 8.26407 8.91834 9.55896 10.07574 10.98929 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.022383 B = 0.005120 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.646143 B = 5467.029501 C = 6176.573871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.140 3.860 3 N -0.566 5.566 4 C -0.266 4.266 5 H 0.067 0.933 6 C 0.018 3.982 7 N -0.880 5.880 8 Si 0.899 3.101 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.287 1.287 12 C 0.190 3.810 13 C 0.095 3.905 14 C -0.247 4.247 15 C -0.149 4.149 16 C -0.030 4.030 17 C -0.112 4.112 18 Cl -0.062 7.062 19 C 0.137 3.863 20 N -0.454 5.454 21 C 0.246 3.754 22 O -0.166 6.166 23 H 0.039 0.961 24 H 0.050 0.950 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.040 0.960 28 H 0.260 0.740 29 H 0.122 0.878 30 H 0.075 0.925 31 H 0.156 0.844 32 H 0.144 0.856 33 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.343 -0.677 9.612 14.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.014 3.986 3 N -0.283 5.283 4 C -0.395 4.395 5 H 0.085 0.915 6 C -0.183 4.183 7 N -0.521 5.521 8 Si 0.728 3.272 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.214 1.214 12 C 0.062 3.938 13 C 0.041 3.959 14 C -0.268 4.268 15 C -0.153 4.153 16 C -0.057 4.057 17 C -0.141 4.141 18 Cl -0.034 7.034 19 C -0.027 4.027 20 N -0.171 5.171 21 C 0.069 3.931 22 O -0.062 6.062 23 H 0.058 0.942 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.139 0.861 30 H 0.093 0.907 31 H 0.173 0.827 32 H 0.161 0.839 33 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -9.757 0.241 8.930 13.229 hybrid contribution -0.838 0.026 0.056 0.840 sum -10.594 0.266 8.986 13.895 Atomic orbital electron populations 1.22386 0.99642 0.99403 1.01832 1.20964 0.91946 0.86150 0.99525 1.43864 1.74612 1.08238 1.01634 1.19107 1.08204 1.19617 0.92575 0.91540 1.25110 0.93907 1.00875 0.98414 1.69926 1.04588 1.35648 1.41977 0.86286 0.77881 0.82293 0.80754 1.19920 1.20875 1.21386 1.20171 0.90321 0.96468 0.86860 1.25514 0.99535 0.79132 0.91678 1.21974 0.96770 1.00102 1.07913 1.20650 0.97524 0.96489 1.00631 1.20719 0.91998 0.96602 0.96358 1.21680 0.93166 0.97241 1.02050 1.98352 1.36381 1.98114 1.70528 1.22433 0.91006 0.97704 0.91547 1.66420 1.05764 1.24733 1.20157 1.19923 0.89147 0.90658 0.93339 1.84237 1.34177 1.30169 1.57574 0.94177 0.93141 0.93205 0.92909 0.94137 0.93009 0.86089 0.90680 0.82656 0.83860 0.81150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.02 10.21 37.16 0.38 -2.65 16 2 C 0.14 2.69 6.44 -4.04 -0.03 2.67 16 3 N -0.57 -13.07 2.44 -174.61 -0.43 -13.49 16 4 C -0.27 -6.95 9.48 -15.06 -0.14 -7.09 16 5 H 0.07 1.76 7.93 -52.49 -0.42 1.35 16 6 C 0.02 0.48 4.95 -17.43 -0.09 0.39 16 7 N -0.88 -23.84 11.32 55.49 0.63 -23.21 16 8 Si 0.90 21.44 29.61 -169.99 -5.03 16.41 16 9 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 C 0.19 4.11 5.83 -5.20 -0.03 4.08 16 13 C 0.09 1.93 6.78 -35.80 -0.24 1.69 16 14 C -0.25 -4.29 9.35 -37.67 -0.35 -4.64 16 15 C -0.15 -2.59 6.41 -105.14 -0.67 -3.26 16 16 C -0.03 -0.43 10.02 -39.06 -0.39 -0.82 16 17 C -0.11 -1.49 6.34 -39.35 -0.25 -1.74 16 18 Cl -0.06 -0.68 28.99 -51.86 -1.50 -2.18 16 19 C 0.14 1.96 10.95 -17.46 -0.19 1.77 16 20 N -0.45 -8.39 10.38 -12.95 -0.13 -8.52 16 21 C 0.25 4.93 8.58 -16.37 -0.14 4.79 16 22 O -0.17 -3.75 10.57 3.84 0.04 -3.70 16 23 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.88 6.34 -51.93 -0.33 0.55 16 25 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 27 H 0.04 0.69 7.83 -51.93 -0.41 0.29 16 28 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 29 H 0.12 3.00 5.32 -51.93 -0.28 2.73 16 30 H 0.08 1.41 7.86 -51.93 -0.41 1.01 16 31 H 0.16 2.28 8.05 -52.49 -0.42 1.86 16 32 H 0.14 1.64 8.06 -52.49 -0.42 1.22 16 33 H 0.17 1.86 8.06 -52.48 -0.42 1.43 16 LS Contribution 302.09 15.07 4.55 4.55 Total: -1.00 -28.22 302.09 -7.53 -35.75 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -3.50 Total: -0.78 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -2.15 Total: -4.82 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: 0.07 Total: -45.23 kcal Atomic # 8 Polarization: -3.75 SS G_CDS: 0.04 Total: -3.70 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.50 Total: -2.18 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.22 -7.53 -35.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590638428.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.212 kcal (2) G-P(sol) polarization free energy of solvation -28.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds