Wall clock time and date at job start Tue Mar 31 2020 00:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47258 * 2 1 4 4 C 1.36940 * 120.00135 * 275.40328 * 3 2 1 5 5 H 1.08001 * 119.99811 * 34.08357 * 4 3 2 6 6 C 1.38805 * 119.99846 * 214.07934 * 4 3 2 7 7 N 1.31627 * 120.00272 * 22.95775 * 6 4 3 8 8 Si 1.86802 * 119.99900 * 202.95988 * 6 4 3 9 9 H 1.48494 * 109.46946 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47245 * 120.00257 * 8 6 4 11 11 H 1.48502 * 109.47148 * 239.99949 * 8 6 4 12 12 C 1.46496 * 119.99789 * 95.40712 * 3 2 1 13 13 C 1.50700 * 109.46997 * 269.99982 * 12 3 2 14 14 C 1.34000 * 124.92277 * 89.99935 * 13 12 3 15 15 C 1.46661 * 106.10437 * 179.73995 * 14 13 12 16 16 C 1.39506 * 134.66344 * 180.26670 * 15 14 13 17 17 C 1.38381 * 117.98627 * 179.97438 * 16 15 14 18 18 Cl 1.73599 * 120.35915 * 180.02562 * 17 16 15 19 19 C 1.38714 * 119.28467 * 359.97438 * 17 16 15 20 20 N 1.31640 * 121.57821 * 359.97220 * 19 17 16 21 21 C 1.32498 * 121.73069 * 0.05036 * 20 19 17 22 22 O 1.34466 * 124.91956 * 270.19510 * 13 12 3 23 23 H 1.08994 * 109.47259 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46666 * 299.99628 * 1 2 3 25 25 H 1.09004 * 109.47127 * 59.99284 * 1 2 3 26 26 H 1.09004 * 109.47036 * 240.00611 * 2 1 3 27 27 H 1.08998 * 109.47076 * 120.00286 * 2 1 3 28 28 H 0.96997 * 119.99600 * 180.02562 * 7 6 4 29 29 H 1.08997 * 109.47445 * 149.99724 * 12 3 2 30 30 H 1.09002 * 109.47196 * 29.99749 * 12 3 2 31 31 H 1.08001 * 126.94204 * 359.97438 * 14 13 12 32 32 H 1.08002 * 121.00685 * 0.02562 * 16 15 14 33 33 H 1.08003 * 119.20997 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1414 2.0640 -1.1807 5 1 1.4399 1.8869 -1.9825 6 6 3.1676 2.9838 -1.3468 7 7 4.2560 2.8955 -0.6119 8 14 3.0039 4.3471 -2.6133 9 1 1.6949 4.2266 -3.3039 10 1 3.0869 5.6655 -1.9350 11 1 4.1003 4.2326 -3.6084 12 6 2.3753 2.0319 1.2631 13 6 1.1640 2.7265 1.8300 14 6 0.2791 2.1658 2.6655 15 6 -0.7176 3.2013 2.9573 16 6 -1.8689 3.2607 3.7429 17 6 -2.5754 4.4502 3.7708 18 17 -4.0165 4.5926 4.7282 19 6 -2.1192 5.5280 3.0262 20 7 -1.0287 5.4472 2.2932 21 6 -0.3134 4.3338 2.2286 22 8 0.8127 3.9977 1.5679 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5140 -0.8899 26 1 1.8934 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 4.9729 3.5385 -0.7278 29 1 3.1635 2.7634 1.0850 30 1 2.7286 1.2821 1.9709 31 1 0.2983 1.1566 3.0496 32 1 -2.1983 2.4045 4.3128 33 1 -2.6713 6.4559 3.0491 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590638428.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:20 Heat of formation + Delta-G solvation = 40.495293 kcal Electronic energy + Delta-G solvation = -19453.383801 eV Core-core repulsion = 16313.827053 eV Total energy + Delta-G solvation = -3139.556748 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.59434 -40.13815 -37.93588 -37.57438 -34.61209 -33.88855 -32.38739 -31.83396 -30.28350 -27.79277 -25.74204 -24.65529 -23.56422 -22.48079 -22.05707 -19.20762 -18.93672 -18.04793 -17.49252 -17.38347 -16.86953 -15.77152 -15.68838 -15.41413 -14.87022 -14.67246 -14.44673 -14.20368 -14.13630 -13.83267 -13.32269 -13.13418 -12.94737 -12.85768 -12.67214 -12.41105 -12.26883 -12.11829 -11.97832 -11.80616 -11.49220 -10.65985 -10.62200 -9.84064 -9.38407 -8.77002 -7.97286 -5.53764 -0.30545 -0.16285 0.85000 1.31169 1.39512 1.42527 1.44761 1.50675 2.43373 2.46712 3.12699 3.27830 3.41102 3.62095 3.67611 3.73868 4.11431 4.31183 4.42860 4.50400 4.61343 4.71696 4.76232 4.86389 4.88879 5.07540 5.15150 5.27012 5.27524 5.53601 5.57049 5.64176 6.06866 6.36328 6.61654 7.03105 7.71959 8.19141 8.99985 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.022383 B = 0.005120 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.646143 B = 5467.029501 C = 6176.573871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.136 3.864 3 N -0.584 5.584 4 C -0.269 4.269 5 H 0.053 0.947 6 C -0.023 4.023 7 N -0.904 5.904 8 Si 0.942 3.058 9 H -0.275 1.275 10 H -0.294 1.294 11 H -0.280 1.280 12 C 0.196 3.804 13 C 0.056 3.944 14 C -0.209 4.209 15 C -0.163 4.163 16 C -0.014 4.014 17 C -0.107 4.107 18 Cl -0.029 7.029 19 C 0.147 3.853 20 N -0.491 5.491 21 C 0.211 3.789 22 O -0.208 6.208 23 H 0.072 0.928 24 H 0.051 0.949 25 H 0.023 0.977 26 H 0.041 0.959 27 H 0.067 0.933 28 H 0.256 0.744 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.189 0.811 32 H 0.179 0.821 33 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.088 -1.585 11.767 17.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.011 3.989 3 N -0.303 5.303 4 C -0.399 4.399 5 H 0.071 0.929 6 C -0.221 4.221 7 N -0.547 5.547 8 Si 0.771 3.229 9 H -0.200 1.200 10 H -0.221 1.221 11 H -0.206 1.206 12 C 0.069 3.931 13 C 0.004 3.996 14 C -0.230 4.230 15 C -0.166 4.166 16 C -0.040 4.040 17 C -0.136 4.136 18 Cl -0.001 7.001 19 C -0.016 4.016 20 N -0.208 5.208 21 C 0.036 3.964 22 O -0.105 6.105 23 H 0.091 0.909 24 H 0.070 0.930 25 H 0.042 0.958 26 H 0.060 0.940 27 H 0.086 0.914 28 H 0.066 0.934 29 H 0.102 0.898 30 H 0.118 0.882 31 H 0.206 0.794 32 H 0.197 0.803 33 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -12.517 -0.692 11.095 16.741 hybrid contribution -0.250 0.386 -0.411 0.617 sum -12.767 -0.306 10.683 16.650 Atomic orbital electron populations 1.22235 0.98017 1.01091 1.00569 1.21107 0.93119 0.84397 1.00263 1.44022 1.75263 1.09773 1.01227 1.19166 1.07313 1.19826 0.93618 0.92908 1.25572 0.94084 1.02447 1.00042 1.70008 1.05044 1.36258 1.43387 0.85608 0.77771 0.80107 0.79418 1.20006 1.22093 1.20646 1.19896 0.90004 0.96278 0.86966 1.25041 1.00479 0.79330 0.94733 1.22280 0.94782 1.00865 1.05039 1.20773 0.98874 0.95418 1.01570 1.21113 0.90211 0.97908 0.94807 1.21745 0.93859 0.96572 1.01438 1.98376 1.34247 1.98011 1.69434 1.23091 0.89546 0.99290 0.89708 1.66403 1.07292 1.25065 1.22057 1.20219 0.89190 0.92337 0.94650 1.84090 1.36005 1.31406 1.59035 0.90874 0.93021 0.95766 0.94048 0.91449 0.93432 0.89807 0.88172 0.79396 0.80333 0.77862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.30 10.21 71.98 0.73 -4.57 16 2 C 0.14 5.10 6.44 86.38 0.56 5.66 16 3 N -0.58 -27.37 2.44 -706.35 -1.73 -29.10 16 4 C -0.27 -14.54 9.48 84.03 0.80 -13.75 16 5 H 0.05 2.92 7.93 -2.91 -0.02 2.90 16 6 C -0.02 -1.26 4.95 84.86 0.42 -0.84 16 7 N -0.90 -51.01 11.32 21.65 0.25 -50.76 16 8 Si 0.94 45.77 29.61 68.60 2.03 47.80 16 9 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 10 H -0.29 -14.66 7.11 99.48 0.71 -13.95 16 11 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 12 C 0.20 8.65 5.83 85.63 0.50 9.15 16 13 C 0.06 2.29 6.78 24.72 0.17 2.46 16 14 C -0.21 -6.87 9.35 23.51 0.22 -6.65 16 15 C -0.16 -5.33 6.41 -20.20 -0.13 -5.46 16 16 C -0.01 -0.35 10.02 22.61 0.23 -0.12 16 17 C -0.11 -2.46 6.34 22.42 0.14 -2.31 16 18 Cl -0.03 -0.51 28.99 -2.72 -0.08 -0.59 16 19 C 0.15 3.86 10.95 84.84 0.93 4.79 16 20 N -0.49 -17.88 10.38 -308.08 -3.20 -21.08 16 21 C 0.21 8.47 8.58 85.17 0.73 9.20 16 22 O -0.21 -9.76 10.57 -9.17 -0.10 -9.85 16 23 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 24 H 0.05 1.68 6.34 -2.39 -0.02 1.67 16 25 H 0.02 0.89 8.14 -2.38 -0.02 0.88 16 26 H 0.04 1.62 8.08 -2.39 -0.02 1.60 16 27 H 0.07 2.15 7.83 -2.39 -0.02 2.13 16 28 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 29 H 0.08 4.38 5.32 -2.39 -0.01 4.37 16 30 H 0.10 3.73 7.86 -2.39 -0.02 3.71 16 31 H 0.19 4.74 8.05 -2.91 -0.02 4.72 16 32 H 0.18 3.08 8.06 -2.91 -0.02 3.06 16 33 H 0.20 3.74 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -64.64 302.09 3.60 -61.03 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: 1.13 Total: 5.00 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: 5.29 Total: -2.44 kcal Atomic # 7 Polarization: -96.27 SS G_CDS: -4.68 Total: -100.94 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: -0.10 Total: -9.85 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -0.08 Total: -0.59 kcal Total: -64.64 3.60 -61.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590638428.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.527 kcal (2) G-P(sol) polarization free energy of solvation -64.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds