Wall clock time and date at job start Tue Mar 31 2020 01:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00031 * 2 1 4 4 H 1.48497 * 109.47314 * 269.99980 * 3 2 1 5 5 H 1.48504 * 109.47122 * 29.99677 * 3 2 1 6 6 H 1.48496 * 109.47125 * 150.00016 * 3 2 1 7 7 C 1.37883 * 119.99889 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00032 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99756 * 180.02562 * 7 2 1 10 10 C 1.52992 * 109.47201 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47349 * 179.97438 * 10 9 7 12 12 S 1.81408 * 109.47222 * 180.02562 * 11 10 9 13 13 O 1.42100 * 109.46663 * 289.05597 * 12 11 10 14 14 C 1.76200 * 103.00001 * 180.02562 * 12 11 10 15 15 C 1.38286 * 120.11465 * 89.99642 * 14 12 11 16 16 C 1.37934 * 120.35095 * 179.56862 * 15 14 12 17 17 C 1.39285 * 120.24200 * 0.33189 * 16 15 14 18 18 C 1.38888 * 118.87183 * 0.18017 * 17 16 15 19 19 C 1.37743 * 120.78857 * 359.63666 * 18 17 16 20 20 C 1.51646 * 107.03924 * 179.45396 * 18 17 16 21 21 C 1.54708 * 101.91724 * 344.49788 * 20 18 17 22 22 O 1.36127 * 129.88853 * 180.60726 * 17 16 15 23 23 H 0.96997 * 120.00028 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47612 * 59.99368 * 9 7 2 25 25 H 1.09010 * 109.46616 * 299.99534 * 9 7 2 26 26 H 1.09006 * 109.47456 * 59.99784 * 10 9 7 27 27 H 1.09000 * 109.47435 * 300.00079 * 10 9 7 28 28 H 1.08996 * 109.47163 * 59.99964 * 11 10 9 29 29 H 1.09005 * 109.47553 * 299.99934 * 11 10 9 30 30 H 1.08002 * 119.82806 * 359.85482 * 15 14 12 31 31 H 1.07997 * 119.87774 * 180.35239 * 16 15 14 32 32 H 1.08004 * 120.00958 * 180.33137 * 19 18 17 33 33 H 1.08995 * 110.93858 * 226.34337 * 20 18 17 34 34 H 1.09003 * 110.97495 * 102.66632 * 20 18 17 35 35 H 1.09003 * 110.74700 * 266.98826 * 21 20 18 36 36 H 1.09000 * 110.74929 * 143.63652 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0216 -2.6365 -0.0001 11 6 5.5515 -2.6365 -0.0001 12 16 6.1563 -4.3468 -0.0010 13 8 5.9018 -4.9398 1.2650 14 6 7.9070 -4.1482 -0.0002 15 6 8.5960 -4.0707 1.1963 16 6 9.9675 -3.9242 1.2026 17 6 10.6702 -3.8459 0.0026 18 6 9.9660 -3.9143 -1.1926 19 6 8.5968 -4.0644 -1.1966 20 6 10.9798 -3.7901 -2.3134 21 6 12.2207 -3.2502 -1.5635 22 8 12.0067 -3.7137 -0.2194 23 1 -0.4850 0.8400 -0.0004 24 1 3.8746 -0.6808 0.8904 25 1 3.8752 -0.6797 -0.8896 26 1 3.6586 -3.1502 -0.8903 27 1 3.6579 -3.1506 0.8896 28 1 5.9149 -2.1227 0.8898 29 1 5.9149 -2.1226 -0.8901 30 1 8.0578 -4.1299 2.1308 31 1 10.4984 -3.8702 2.1415 32 1 8.0623 -4.1214 -2.1334 33 1 10.6413 -3.0801 -3.0680 34 1 11.1876 -4.7620 -2.7611 35 1 12.2483 -2.1611 -1.5966 36 1 13.1361 -3.6736 -1.9768 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591255118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:15 Heat of formation + Delta-G solvation = -55.069280 kcal Electronic energy + Delta-G solvation = -18610.549769 eV Core-core repulsion = 15572.433080 eV Total energy + Delta-G solvation = -3038.116689 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.37449 -37.67025 -35.53814 -34.54161 -33.02026 -32.06684 -30.46034 -29.50872 -28.03229 -24.05432 -23.31018 -22.60674 -22.04760 -20.20615 -17.85083 -17.70888 -17.01950 -16.69256 -16.48939 -16.02298 -14.85111 -14.64921 -14.42507 -14.04328 -14.00651 -13.54543 -13.36291 -13.03644 -12.90769 -12.64479 -12.40833 -12.15094 -12.07406 -11.56140 -11.30649 -11.15938 -11.13885 -10.82994 -10.52909 -9.94620 -9.77315 -9.51215 -9.19608 -9.16835 -8.68526 -8.54014 -8.08068 -6.04388 -4.02441 0.75320 1.06503 1.93403 2.83752 2.89400 3.29525 3.37495 3.40422 3.41579 3.96995 4.07944 4.25702 4.44920 4.52957 4.60465 4.92066 5.01570 5.07216 5.25376 5.29296 5.34404 5.39211 5.44043 5.51923 5.68430 5.81247 6.03923 6.08173 6.09385 6.30661 6.39032 6.53258 6.83420 6.84868 7.26500 7.39992 7.78591 8.53468 9.00787 9.58098 11.09117 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.025047 B = 0.003506 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.644725 B = 7984.350299 C = 8561.218406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.522 4.522 8 H 0.073 0.927 9 C -0.008 4.008 10 C -0.085 4.085 11 C -0.445 4.445 12 S 1.321 4.679 13 O -0.855 6.855 14 C -0.483 4.483 15 C -0.018 4.018 16 C -0.154 4.154 17 C 0.133 3.867 18 C -0.195 4.195 19 C 0.006 3.994 20 C -0.108 4.108 21 C 0.049 3.951 22 O -0.306 6.306 23 H 0.263 0.737 24 H 0.014 0.986 25 H 0.014 0.986 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.081 0.919 29 H 0.110 0.890 30 H 0.136 0.864 31 H 0.129 0.871 32 H 0.140 0.860 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.359 -8.539 -7.712 26.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.192 1.192 7 C -0.560 4.560 8 H 0.092 0.908 9 C -0.047 4.047 10 C -0.124 4.124 11 C -0.583 4.583 12 S 1.520 4.480 13 O -0.851 6.851 14 C -0.578 4.578 15 C -0.037 4.037 16 C -0.174 4.174 17 C 0.087 3.913 18 C -0.197 4.197 19 C -0.013 4.013 20 C -0.145 4.145 21 C -0.026 4.026 22 O -0.219 6.219 23 H 0.073 0.927 24 H 0.032 0.968 25 H 0.032 0.968 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.100 0.900 29 H 0.129 0.871 30 H 0.154 0.846 31 H 0.147 0.853 32 H 0.158 0.842 33 H 0.113 0.887 34 H 0.110 0.890 35 H 0.097 0.903 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 23.917 -9.323 -7.542 26.755 hybrid contribution 1.322 2.323 1.674 3.154 sum 25.239 -7.000 -5.868 26.841 Atomic orbital electron populations 1.69914 1.06279 1.26877 1.51165 1.25031 0.94727 0.99151 0.94591 0.86780 0.80353 0.83685 0.78483 1.20207 1.21387 1.19166 1.21177 0.89491 0.94579 1.50786 0.90849 1.19564 0.97008 0.91783 0.96349 1.21130 0.88318 1.01185 1.01813 1.27844 1.05553 1.17677 1.07177 1.69406 0.80300 0.88755 1.09504 1.93084 1.79699 1.67519 1.44781 1.27927 1.20074 1.13438 0.96368 1.20919 0.92898 0.91577 0.98313 1.20356 0.93653 1.07650 0.95722 1.19724 0.83015 0.93768 0.94791 1.20855 0.95179 1.09267 0.94382 1.19992 0.91469 0.92656 0.97231 1.21788 0.92552 1.03137 0.97026 1.23893 0.99321 0.99998 0.79348 1.86838 1.20347 1.81644 1.33089 0.92730 0.96804 0.96764 0.91462 0.92284 0.89971 0.87128 0.84573 0.85316 0.84203 0.88672 0.88983 0.90322 0.87462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.02 13.96 55.43 0.77 -27.25 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.86 27.47 -169.99 -4.67 17.19 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 6 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 7 C -0.52 -14.97 9.66 -34.44 -0.33 -15.31 16 8 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 9 C -0.01 -0.20 4.04 -27.89 -0.11 -0.31 16 10 C -0.09 -1.65 5.16 -26.74 -0.14 -1.78 16 11 C -0.44 -6.70 5.88 37.16 0.22 -6.48 16 12 S 1.32 16.50 13.56 -107.50 -1.46 15.04 16 13 O -0.86 -15.85 16.90 -35.23 -0.60 -16.44 16 14 C -0.48 -5.82 5.62 -39.52 -0.22 -6.05 16 15 C -0.02 -0.24 9.42 -39.67 -0.37 -0.62 16 16 C -0.15 -1.91 10.06 -39.30 -0.40 -2.30 16 17 C 0.13 1.56 7.04 -38.95 -0.27 1.29 16 18 C -0.20 -1.95 6.27 -104.10 -0.65 -2.60 16 19 C 0.01 0.05 9.75 -39.72 -0.39 -0.33 16 20 C -0.11 -0.70 7.12 -26.52 -0.19 -0.89 16 21 C 0.05 0.33 8.01 38.06 0.30 0.63 16 22 O -0.31 -3.31 11.10 -20.14 -0.22 -3.54 16 23 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 24 H 0.01 0.34 7.20 -51.93 -0.37 -0.04 16 25 H 0.01 0.32 7.57 -51.92 -0.39 -0.07 16 26 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.11 1.38 8.14 -51.92 -0.42 0.96 16 30 H 0.14 1.95 7.46 -52.49 -0.39 1.56 16 31 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 32 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 33 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 317.02 15.07 4.78 4.78 Total: -1.00 -37.68 317.02 -9.02 -46.70 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: -4.97 Total: -3.57 kcal Atomic # 6 Polarization: -30.26 SS G_CDS: -2.65 Total: -32.91 kcal Atomic # 7 Polarization: -28.02 SS G_CDS: 0.77 Total: -27.25 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.82 Total: -19.98 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal Atomic # 16 Polarization: 16.50 SS G_CDS: -1.46 Total: 15.04 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -37.68 -9.02 -46.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591255118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.373 kcal (2) G-P(sol) polarization free energy of solvation -37.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds