Wall clock time and date at job start Tue Mar 31 2020 00:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.46946 * 2 1 4 4 C 1.38433 * 119.99987 * 180.02562 * 3 2 1 5 5 N 1.29449 * 125.17750 * 180.02562 * 4 3 2 6 6 C 1.33625 * 116.90299 * 179.97438 * 5 4 3 7 7 C 1.47061 * 122.48781 * 180.02562 * 6 5 4 8 8 O 1.21691 * 119.99765 * 189.01077 * 7 6 5 9 9 N 1.34770 * 120.00542 * 9.00409 * 7 6 5 10 10 C 1.36948 * 120.00324 * 176.68937 * 9 7 6 11 11 H 1.07999 * 120.00139 * 337.35484 * 10 9 7 12 12 C 1.38971 * 120.00025 * 157.62904 * 10 9 7 13 13 N 1.31422 * 120.00055 * 357.25591 * 12 10 9 14 14 Si 1.86801 * 120.00150 * 177.25810 * 12 10 9 15 15 H 1.48496 * 109.47006 * 89.99594 * 14 12 10 16 16 H 1.48503 * 109.47202 * 209.99866 * 14 12 10 17 17 H 1.48502 * 109.46980 * 329.99773 * 14 12 10 18 18 C 1.46509 * 119.99726 * 356.69811 * 9 7 6 19 19 C 1.47199 * 109.46784 * 277.96102 * 18 9 7 20 20 N 5.76269 * 102.74526 * 338.44213 * 2 1 3 21 21 C 1.35167 * 115.01830 * 0.26608 * 6 5 4 22 22 S 1.76054 * 125.17819 * 359.97258 * 4 3 2 23 23 H 1.08996 * 109.46977 * 299.99800 * 1 2 3 24 24 H 1.09000 * 109.46950 * 60.00281 * 1 2 3 25 25 H 1.08997 * 109.47176 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47470 * 240.00115 * 2 1 3 27 27 H 1.08997 * 109.47631 * 119.99963 * 2 1 3 28 28 H 0.97001 * 120.00270 * 359.97438 * 3 2 1 29 29 H 0.96997 * 120.00290 * 180.02562 * 13 12 10 30 30 H 1.08996 * 109.47183 * 37.96328 * 18 9 7 31 31 H 1.08997 * 109.46826 * 157.96283 * 18 9 7 32 32 H 1.08004 * 125.87959 * 179.72837 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3793 1.6343 -0.0005 5 7 3.9191 2.8108 -0.0001 6 6 5.2544 2.8634 -0.0002 7 6 5.9948 4.1340 0.0008 8 8 7.2005 4.1357 -0.1644 9 7 5.3383 5.2965 0.1845 10 6 6.0354 6.4733 0.2532 11 1 7.0803 6.4668 0.5261 12 6 5.3968 7.6764 -0.0227 13 7 4.1385 7.6806 -0.4019 14 14 6.3270 9.2876 0.1454 15 1 6.9763 9.6215 -1.1477 16 1 5.3802 10.3693 0.5178 17 1 7.3640 9.1528 1.1997 18 6 3.8786 5.3014 0.3109 19 6 3.2701 5.2607 -1.0288 20 7 2.8013 5.2275 -2.0653 21 6 5.8738 1.6620 -0.0065 22 16 4.6395 0.4049 -0.0006 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.3880 2.1186 -0.0004 29 1 3.6929 8.5202 -0.5948 30 1 3.5604 4.4287 0.8812 31 1 3.5617 6.2078 0.8266 32 1 6.9416 1.5005 -0.0117 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597032626.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:17 Heat of formation + Delta-G solvation = 68.074806 kcal Electronic energy + Delta-G solvation = -19431.326408 eV Core-core repulsion = 16327.302055 eV Total energy + Delta-G solvation = -3104.024353 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.72451 -37.90886 -36.25079 -35.56493 -34.13224 -31.77287 -31.20130 -28.45667 -27.36495 -25.62837 -23.82892 -23.04467 -21.28047 -18.91631 -18.04954 -17.73372 -16.62537 -16.19183 -15.50873 -15.34601 -15.20818 -14.75590 -14.19509 -13.95357 -13.30174 -12.98557 -12.85880 -12.72406 -12.51375 -12.23593 -11.94205 -11.72909 -11.51152 -11.38288 -11.16239 -11.06368 -10.43608 -10.37540 -10.31404 -10.10062 -9.29245 -9.04839 -8.88673 -8.67959 -7.98346 -7.53866 -6.42985 -4.03253 1.18163 1.33909 1.99058 2.76573 3.01544 3.18508 3.23654 3.26735 3.87795 4.11832 4.23536 4.46718 4.62168 4.77145 4.83360 5.03297 5.03807 5.23843 5.44293 5.57756 5.68704 5.73982 5.83231 5.98968 6.28209 6.61878 6.77256 6.95298 7.35344 7.43486 7.92317 8.10844 8.35914 8.99119 9.06728 9.19835 9.77307 10.55146 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.024840 B = 0.005587 C = 0.004745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.953234 B = 5010.644204 C = 5900.026513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.119 3.881 3 N -0.696 5.696 4 C 0.344 3.656 5 N -0.521 5.521 6 C 0.087 3.913 7 C 0.510 3.490 8 O -0.574 6.574 9 N -0.417 5.417 10 C -0.300 4.300 11 H 0.109 0.891 12 C 0.031 3.969 13 N -0.879 5.879 14 Si 0.938 3.062 15 H -0.277 1.277 16 H -0.281 1.281 17 H -0.267 1.267 18 C 0.213 3.787 19 C 0.278 3.722 20 N -0.503 5.503 21 C -0.230 4.230 22 S 0.032 5.968 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.413 0.587 29 H 0.274 0.726 30 H 0.108 0.892 31 H 0.133 0.867 32 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.362 -13.527 5.177 16.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.005 4.005 3 N -0.339 5.339 4 C -0.030 4.030 5 N -0.248 5.248 6 C -0.043 4.043 7 C 0.297 3.703 8 O -0.458 6.458 9 N -0.134 5.134 10 C -0.428 4.428 11 H 0.126 0.874 12 C -0.173 4.173 13 N -0.518 5.518 14 Si 0.764 3.236 15 H -0.202 1.202 16 H -0.207 1.207 17 H -0.191 1.191 18 C 0.086 3.914 19 C -0.039 4.039 20 N -0.184 5.184 21 C -0.373 4.373 22 S 0.277 5.723 23 H 0.085 0.915 24 H 0.084 0.916 25 H 0.095 0.905 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.252 0.748 29 H 0.085 0.915 30 H 0.125 0.875 31 H 0.150 0.850 32 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -7.951 -14.210 3.538 16.663 hybrid contribution 0.628 1.889 0.233 2.004 sum -7.323 -12.321 3.771 14.821 Atomic orbital electron populations 1.21945 0.93604 1.03298 1.03186 1.21449 0.95463 0.81720 1.01862 1.43866 1.00548 1.08391 1.81096 1.24404 0.90316 0.90634 0.97611 1.67169 1.10476 1.20897 1.26263 1.20400 0.86740 0.95665 1.01516 1.16998 0.86797 0.82010 0.84532 1.90665 1.13550 1.86128 1.55409 1.43477 1.04825 1.05598 1.59547 1.19850 0.96867 0.81916 1.44117 0.87358 1.25453 0.96110 1.00242 0.95474 1.69833 1.10303 1.28217 1.43491 0.85733 0.78942 0.79964 0.78957 1.20238 1.20693 1.19133 1.19331 0.80163 1.04698 0.87160 1.29174 0.91978 0.87935 0.94828 1.80913 1.11024 1.14579 1.11852 1.26407 1.03179 0.92295 1.15390 1.84566 0.98997 1.12178 1.76523 0.91545 0.91575 0.90515 0.91703 0.91568 0.74840 0.91499 0.87535 0.85007 0.80096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.99 10.03 37.16 0.37 -0.61 16 2 C 0.12 0.99 6.31 -4.04 -0.03 0.96 16 3 N -0.70 -8.26 5.71 -61.02 -0.35 -8.61 16 4 C 0.34 5.30 8.42 -88.05 -0.74 4.56 16 5 N -0.52 -9.88 5.62 -10.60 -0.06 -9.94 16 6 C 0.09 1.82 6.43 -84.60 -0.54 1.28 16 7 C 0.51 12.81 7.49 -12.69 -0.10 12.72 16 8 O -0.57 -15.82 16.41 5.20 0.09 -15.74 16 9 N -0.42 -10.60 2.61 -119.28 -0.31 -10.91 16 10 C -0.30 -7.98 9.30 -14.99 -0.14 -8.11 16 11 H 0.11 2.95 7.41 -52.49 -0.39 2.56 16 12 C 0.03 0.77 5.26 -17.46 -0.09 0.68 16 13 N -0.88 -22.58 8.89 55.50 0.49 -22.09 16 14 Si 0.94 20.10 29.55 -169.99 -5.02 15.08 16 15 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 16 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 17 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 18 C 0.21 4.82 4.75 -6.82 -0.03 4.79 16 19 C 0.28 6.77 12.42 -20.69 -0.26 6.51 16 20 N -0.50 -12.89 18.55 42.23 0.78 -12.10 16 21 C -0.23 -4.10 10.84 29.64 0.32 -3.78 16 22 S 0.03 0.44 22.61 -107.50 -2.43 -1.99 16 23 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.41 4.79 8.60 -40.82 -0.35 4.43 16 29 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 30 H 0.11 2.15 5.45 -51.93 -0.28 1.87 16 31 H 0.13 3.04 6.03 -51.93 -0.31 2.73 16 32 H 0.18 3.07 8.02 -52.48 -0.42 2.65 16 LS Contribution 297.05 15.07 4.48 4.48 Total: -1.00 -31.84 297.05 -6.57 -38.41 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -3.01 Total: 4.41 kcal Atomic # 6 Polarization: 20.22 SS G_CDS: -1.23 Total: 18.99 kcal Atomic # 7 Polarization: -64.20 SS G_CDS: 0.56 Total: -63.64 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: 0.09 Total: -15.74 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Atomic # 16 Polarization: 0.44 SS G_CDS: -2.43 Total: -1.99 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.84 -6.57 -38.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597032626.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.488 kcal (2) G-P(sol) polarization free energy of solvation -31.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds