Wall clock time and date at job start Tue Mar 31 2020 00:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.46946 * 2 1 4 4 C 1.38433 * 119.99987 * 180.02562 * 3 2 1 5 5 N 1.29449 * 125.17750 * 180.02562 * 4 3 2 6 6 C 1.33625 * 116.90299 * 179.97438 * 5 4 3 7 7 C 1.47061 * 122.48781 * 180.02562 * 6 5 4 8 8 O 1.21691 * 119.99765 * 189.01077 * 7 6 5 9 9 N 1.34770 * 120.00542 * 9.00409 * 7 6 5 10 10 C 1.36948 * 120.00324 * 176.68937 * 9 7 6 11 11 H 1.07999 * 120.00139 * 337.35484 * 10 9 7 12 12 C 1.38971 * 120.00025 * 157.62904 * 10 9 7 13 13 N 1.31422 * 120.00055 * 357.25591 * 12 10 9 14 14 Si 1.86801 * 120.00150 * 177.25810 * 12 10 9 15 15 H 1.48496 * 109.47006 * 89.99594 * 14 12 10 16 16 H 1.48503 * 109.47202 * 209.99866 * 14 12 10 17 17 H 1.48502 * 109.46980 * 329.99773 * 14 12 10 18 18 C 1.46509 * 119.99726 * 356.69811 * 9 7 6 19 19 C 1.47199 * 109.46784 * 277.96102 * 18 9 7 20 20 N 5.76269 * 102.74526 * 338.44213 * 2 1 3 21 21 C 1.35167 * 115.01830 * 0.26608 * 6 5 4 22 22 S 1.76054 * 125.17819 * 359.97258 * 4 3 2 23 23 H 1.08996 * 109.46977 * 299.99800 * 1 2 3 24 24 H 1.09000 * 109.46950 * 60.00281 * 1 2 3 25 25 H 1.08997 * 109.47176 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47470 * 240.00115 * 2 1 3 27 27 H 1.08997 * 109.47631 * 119.99963 * 2 1 3 28 28 H 0.97001 * 120.00270 * 359.97438 * 3 2 1 29 29 H 0.96997 * 120.00290 * 180.02562 * 13 12 10 30 30 H 1.08996 * 109.47183 * 37.96328 * 18 9 7 31 31 H 1.08997 * 109.46826 * 157.96283 * 18 9 7 32 32 H 1.08004 * 125.87959 * 179.72837 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3793 1.6343 -0.0005 5 7 3.9191 2.8108 -0.0001 6 6 5.2544 2.8634 -0.0002 7 6 5.9948 4.1340 0.0008 8 8 7.2005 4.1357 -0.1644 9 7 5.3383 5.2965 0.1845 10 6 6.0354 6.4733 0.2532 11 1 7.0803 6.4668 0.5261 12 6 5.3968 7.6764 -0.0227 13 7 4.1385 7.6806 -0.4019 14 14 6.3270 9.2876 0.1454 15 1 6.9763 9.6215 -1.1477 16 1 5.3802 10.3693 0.5178 17 1 7.3640 9.1528 1.1997 18 6 3.8786 5.3014 0.3109 19 6 3.2701 5.2607 -1.0288 20 7 2.8013 5.2275 -2.0653 21 6 5.8738 1.6620 -0.0065 22 16 4.6395 0.4049 -0.0006 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.3880 2.1186 -0.0004 29 1 3.6929 8.5202 -0.5948 30 1 3.5604 4.4287 0.8812 31 1 3.5617 6.2078 0.8266 32 1 6.9416 1.5005 -0.0117 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597032626.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:16 Heat of formation + Delta-G solvation = 47.455422 kcal Electronic energy + Delta-G solvation = -19432.220531 eV Core-core repulsion = 16327.302055 eV Total energy + Delta-G solvation = -3104.918477 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.31513 -39.46004 -37.58952 -37.19752 -36.09814 -33.69938 -32.16513 -29.64563 -29.23474 -27.40071 -25.30863 -23.82282 -22.73701 -20.43886 -19.68482 -19.47627 -18.03876 -17.93069 -16.91500 -16.62033 -16.34724 -16.13550 -15.77438 -15.55880 -14.91814 -14.68016 -14.61308 -14.02572 -13.69171 -13.37353 -13.20793 -13.14030 -12.96077 -12.87166 -12.61254 -12.56554 -12.38592 -12.09395 -12.05040 -11.24083 -11.15958 -10.78683 -10.37124 -10.08649 -9.90146 -8.72958 -8.35111 -6.05629 -0.18149 0.13509 0.64664 1.22376 1.45670 1.52568 1.58753 1.97886 2.03639 2.29112 2.39081 2.61642 3.08715 3.16634 3.70852 3.84727 4.05900 4.21248 4.30882 4.48583 4.54006 4.76483 4.89048 5.04311 5.04881 5.13432 5.29106 5.41646 5.70741 5.99102 6.26532 6.40676 6.86534 7.04861 7.13488 7.27759 7.84947 8.60384 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.024840 B = 0.005587 C = 0.004745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.953234 B = 5010.644204 C = 5900.026513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.110 3.890 3 N -0.686 5.686 4 C 0.333 3.667 5 N -0.555 5.555 6 C 0.059 3.941 7 C 0.502 3.498 8 O -0.613 6.613 9 N -0.431 5.431 10 C -0.334 4.334 11 H 0.090 0.910 12 C 0.001 3.999 13 N -0.895 5.895 14 Si 1.000 3.000 15 H -0.284 1.284 16 H -0.267 1.267 17 H -0.261 1.261 18 C 0.224 3.776 19 C 0.290 3.710 20 N -0.530 5.530 21 C -0.239 4.239 22 S 0.132 5.868 23 H 0.068 0.932 24 H 0.059 0.941 25 H 0.097 0.903 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.414 0.586 29 H 0.277 0.723 30 H 0.134 0.866 31 H 0.127 0.873 32 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.712 -15.310 5.675 18.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.012 4.012 3 N -0.327 5.327 4 C -0.040 4.040 5 N -0.284 5.284 6 C -0.071 4.071 7 C 0.290 3.710 8 O -0.499 6.499 9 N -0.148 5.148 10 C -0.462 4.462 11 H 0.108 0.892 12 C -0.201 4.201 13 N -0.534 5.534 14 Si 0.823 3.177 15 H -0.211 1.211 16 H -0.192 1.192 17 H -0.185 1.185 18 C 0.098 3.902 19 C -0.027 4.027 20 N -0.211 5.211 21 C -0.382 4.382 22 S 0.379 5.621 23 H 0.088 0.912 24 H 0.078 0.922 25 H 0.116 0.884 26 H 0.089 0.911 27 H 0.099 0.901 28 H 0.252 0.748 29 H 0.087 0.913 30 H 0.150 0.850 31 H 0.144 0.856 32 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -9.373 -16.042 4.048 19.015 hybrid contribution 0.984 2.203 0.066 2.413 sum -8.389 -13.839 4.113 16.698 Atomic orbital electron populations 1.21932 0.91799 1.04646 1.03060 1.21794 0.97013 0.79695 1.02740 1.44253 0.99141 1.10116 1.79220 1.24687 0.91978 0.90832 0.96528 1.66969 1.09546 1.23179 1.28659 1.19846 0.87898 0.94448 1.04952 1.17669 0.86752 0.83425 0.83150 1.90605 1.15310 1.87165 1.56859 1.43642 1.05738 1.05553 1.59866 1.19864 0.96674 0.83304 1.46359 0.89212 1.26167 0.96825 1.02597 0.94489 1.69921 1.11079 1.28952 1.43441 0.84828 0.78059 0.76380 0.78463 1.21068 1.19158 1.18526 1.19409 0.78786 1.05548 0.86497 1.29482 0.91280 0.86977 0.94933 1.80891 1.12001 1.15718 1.12508 1.26697 1.04761 0.93519 1.13270 1.84161 0.95123 1.08044 1.74749 0.91248 0.92162 0.88383 0.91135 0.90112 0.74761 0.91312 0.84958 0.85585 0.79960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 10.03 71.98 0.72 -0.67 16 2 C 0.11 1.43 6.31 86.38 0.55 1.98 16 3 N -0.69 -14.51 5.71 -346.96 -1.98 -16.49 16 4 C 0.33 9.58 8.42 179.45 1.51 11.09 16 5 N -0.55 -20.64 5.62 -187.45 -1.05 -21.69 16 6 C 0.06 2.48 6.43 40.48 0.26 2.74 16 7 C 0.50 26.04 7.49 86.56 0.65 26.69 16 8 O -0.61 -35.24 16.41 -4.32 -0.07 -35.31 16 9 N -0.43 -22.58 2.61 -649.51 -1.70 -24.27 16 10 C -0.33 -18.41 9.30 84.07 0.78 -17.63 16 11 H 0.09 5.15 7.41 -2.91 -0.02 5.12 16 12 C 0.00 0.04 5.26 84.93 0.45 0.49 16 13 N -0.89 -46.34 8.89 21.67 0.19 -46.15 16 14 Si 1.00 41.54 29.55 68.60 2.03 43.57 16 15 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 16 H -0.27 -10.40 7.11 99.48 0.71 -9.70 16 17 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 18 C 0.22 10.27 4.75 84.57 0.40 10.68 16 19 C 0.29 14.23 12.42 89.42 1.11 15.34 16 20 N -0.53 -27.28 18.55 20.03 0.37 -26.91 16 21 C -0.24 -8.29 10.84 67.11 0.73 -7.57 16 22 S 0.13 3.26 22.61 -56.49 -1.28 1.98 16 23 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 24 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.41 8.75 8.60 -92.71 -0.80 7.95 16 29 H 0.28 13.65 8.31 -92.71 -0.77 12.88 16 30 H 0.13 5.38 5.45 -2.39 -0.01 5.36 16 31 H 0.13 5.91 6.03 -2.39 -0.01 5.90 16 32 H 0.18 6.13 8.02 -2.91 -0.02 6.11 16 Total: -1.00 -70.41 297.05 4.05 -66.36 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 0.38 Total: 15.77 kcal Atomic # 6 Polarization: 35.98 SS G_CDS: 7.15 Total: 43.13 kcal Atomic # 7 Polarization: -131.35 SS G_CDS: -4.16 Total: -135.51 kcal Atomic # 8 Polarization: -35.24 SS G_CDS: -0.07 Total: -35.31 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Atomic # 16 Polarization: 3.26 SS G_CDS: -1.28 Total: 1.98 kcal Total: -70.41 4.05 -66.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597032626.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.815 kcal (2) G-P(sol) polarization free energy of solvation -70.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds