Wall clock time and date at job start Tue Mar 31 2020 00:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 N 1.46503 * 109.47122 * 2 1 4 4 C 1.37815 * 119.99975 * 179.72787 * 3 2 1 5 5 N 1.30255 * 124.73610 * 0.29944 * 4 3 2 6 6 C 1.30855 * 117.27482 * 180.02562 * 5 4 3 7 7 C 1.36854 * 114.00143 * 359.97438 * 6 5 4 8 8 C 1.41845 * 126.11808 * 180.02562 * 7 6 5 9 9 O 1.21794 * 119.99860 * 351.49509 * 8 7 6 10 10 N 1.34770 * 120.00043 * 171.48987 * 8 7 6 11 11 C 1.36923 * 119.99948 * 181.04044 * 10 8 7 12 12 H 1.07997 * 119.99868 * 320.79076 * 11 10 8 13 13 C 1.38971 * 120.00110 * 140.79589 * 11 10 8 14 14 N 1.31422 * 120.00044 * 164.40307 * 13 11 10 15 15 Si 1.86798 * 119.99870 * 344.39821 * 13 11 10 16 16 H 1.48501 * 109.46897 * 89.60769 * 15 13 11 17 17 H 1.48497 * 109.47135 * 209.60611 * 15 13 11 18 18 H 1.48498 * 109.47196 * 329.60841 * 15 13 11 19 19 C 1.46499 * 120.00327 * 1.04271 * 10 8 7 20 20 C 1.47199 * 109.47407 * 83.31978 * 19 10 8 21 21 N 6.82425 * 116.88081 * 19.49536 * 2 1 3 22 22 S 1.70919 * 124.73707 * 179.97438 * 4 3 2 23 23 H 1.09002 * 109.47546 * 59.99741 * 1 2 3 24 24 H 1.09001 * 109.47340 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47155 * 299.99868 * 1 2 3 26 26 H 1.09003 * 109.47155 * 240.00132 * 2 1 3 27 27 H 1.09002 * 109.47546 * 120.00259 * 2 1 3 28 28 H 0.96991 * 119.99994 * 359.97438 * 3 2 1 29 29 H 1.07997 * 122.99694 * 179.97438 * 6 5 4 30 30 H 0.96996 * 120.00258 * 180.02562 * 14 13 11 31 31 H 1.09001 * 109.47368 * 203.31914 * 19 10 8 32 32 H 1.09006 * 109.46765 * 323.31943 * 19 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 3.3732 1.6331 0.0057 5 7 4.2985 0.7163 0.0057 6 6 5.5430 1.1204 0.0120 7 6 5.6863 2.4815 0.0173 8 6 6.9134 3.1930 0.0241 9 8 7.9629 2.5954 0.1817 10 7 6.9180 4.5301 -0.1439 11 6 8.1039 5.2143 -0.1587 12 1 8.8960 4.9365 0.5209 13 6 8.2884 6.2661 -1.0480 14 7 9.2779 7.1122 -0.8689 15 14 7.1300 6.4771 -2.4982 16 1 5.9852 7.3335 -2.0966 17 1 7.8569 7.1181 -3.6232 18 1 6.6269 5.1475 -2.9274 19 6 5.6540 5.2518 -0.3108 20 6 5.0675 5.5263 1.0111 21 7 4.6154 5.7379 2.0314 22 16 4.0740 3.1919 0.0057 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8932 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.3880 2.1185 -0.0004 29 1 6.3822 0.4406 0.0130 30 1 9.4065 7.8465 -1.4894 31 1 5.8385 6.1929 -0.8289 32 1 4.9633 4.6443 -0.8957 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599232746.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:18 Heat of formation + Delta-G solvation = 49.610407 kcal Electronic energy + Delta-G solvation = -19256.145262 eV Core-core repulsion = 16151.320233 eV Total energy + Delta-G solvation = -3104.825029 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.29143 -40.47285 -38.04417 -37.31859 -36.54015 -34.29336 -32.28760 -30.50475 -29.71341 -27.30750 -25.66443 -24.16356 -22.43006 -20.56612 -20.46815 -19.70596 -18.63803 -18.27113 -17.59249 -16.87074 -16.53296 -16.08247 -16.05733 -15.71799 -15.60085 -15.00457 -14.91329 -14.45448 -14.34866 -14.13612 -13.63818 -13.37977 -13.18066 -12.83120 -12.72696 -12.59773 -12.58213 -12.28593 -11.81307 -11.25658 -11.15833 -10.82356 -10.55624 -10.33576 -10.05454 -8.80052 -8.50403 -6.24706 -0.54040 -0.04324 0.50239 1.18147 1.31296 1.34445 1.46810 1.58352 1.67278 2.11423 2.17870 2.28412 2.64182 2.70661 3.08746 3.51525 3.68213 3.93023 4.06803 4.10534 4.24172 4.35337 4.54457 4.81631 5.05665 5.06408 5.25174 5.43993 5.72484 5.97173 6.06513 6.28687 6.39190 6.77420 6.85889 7.07536 7.59969 8.65592 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.026387 B = 0.005603 C = 0.005313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.857933 B = 4996.375368 C = 5268.440433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.121 3.879 3 N -0.668 5.668 4 C 0.305 3.695 5 N -0.569 5.569 6 C 0.186 3.814 7 C -0.366 4.366 8 C 0.558 3.442 9 O -0.589 6.589 10 N -0.469 5.469 11 C -0.338 4.338 12 H 0.053 0.947 13 C 0.016 3.984 14 N -0.905 5.905 15 Si 0.919 3.081 16 H -0.216 1.216 17 H -0.276 1.276 18 H -0.238 1.238 19 C 0.167 3.833 20 C 0.208 3.792 21 N -0.432 5.432 22 S 0.158 5.842 23 H 0.072 0.928 24 H 0.089 0.911 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.428 0.572 29 H 0.189 0.811 30 H 0.285 0.715 31 H 0.136 0.864 32 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.060 -8.446 -4.623 24.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.004 4.004 3 N -0.306 5.306 4 C -0.064 4.064 5 N -0.295 5.295 6 C 0.027 3.973 7 C -0.492 4.492 8 C 0.350 3.650 9 O -0.474 6.474 10 N -0.191 5.191 11 C -0.466 4.466 12 H 0.071 0.929 13 C -0.188 4.188 14 N -0.541 5.541 15 Si 0.739 3.261 16 H -0.141 1.141 17 H -0.202 1.202 18 H -0.161 1.161 19 C 0.038 3.962 20 C -0.112 4.112 21 N -0.111 5.111 22 S 0.411 5.589 23 H 0.091 0.909 24 H 0.108 0.892 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.268 0.732 29 H 0.206 0.794 30 H 0.095 0.905 31 H 0.152 0.848 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -22.821 -8.022 -3.091 24.386 hybrid contribution 1.320 -0.075 -0.617 1.459 sum -21.501 -8.097 -3.708 23.272 Atomic orbital electron populations 1.21986 0.91661 1.04516 1.03348 1.21555 0.96021 0.80690 1.02134 1.44229 0.99230 1.10534 1.76614 1.24790 0.91530 0.95642 0.94391 1.66321 0.99447 1.35082 1.28695 1.22169 0.93469 0.91552 0.90156 1.24247 0.95884 0.98530 1.30543 1.16057 0.87564 0.81490 0.79849 1.90699 1.34349 1.68006 1.54318 1.43435 1.04359 1.04660 1.66690 1.18639 0.92382 1.14685 1.20887 0.92869 1.26252 0.98860 0.94181 0.99485 1.69794 1.32829 1.13959 1.37478 0.86301 0.79878 0.81304 0.78590 1.14094 1.20150 1.16133 1.20028 0.86859 1.01494 0.87788 1.29590 0.92963 0.92946 0.95727 1.81033 1.10071 1.09259 1.10745 1.84100 0.97141 1.04565 1.73077 0.90911 0.89224 0.91343 0.91662 0.92208 0.73236 0.79433 0.90500 0.84752 0.84152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 10.03 71.98 0.72 -0.35 16 2 C 0.12 1.66 6.64 86.38 0.57 2.23 16 3 N -0.67 -11.19 5.68 -351.35 -2.00 -13.18 16 4 C 0.31 7.73 8.05 179.43 1.44 9.17 16 5 N -0.57 -17.13 10.06 -200.55 -2.02 -19.15 16 6 C 0.19 6.37 11.09 84.51 0.94 7.31 16 7 C -0.37 -13.85 6.09 22.84 0.14 -13.71 16 8 C 0.56 26.79 7.36 85.13 0.63 27.42 16 9 O -0.59 -33.05 16.68 -4.65 -0.08 -33.13 16 10 N -0.47 -22.44 2.16 -655.24 -1.42 -23.85 16 11 C -0.34 -19.20 9.39 84.07 0.79 -18.41 16 12 H 0.05 3.57 7.93 -2.91 -0.02 3.54 16 13 C 0.02 0.83 5.37 84.93 0.46 1.29 16 14 N -0.90 -51.44 13.96 21.67 0.30 -51.14 16 15 Si 0.92 35.95 24.87 68.60 1.71 37.65 16 16 H -0.22 -6.82 6.51 99.48 0.65 -6.17 16 17 H -0.28 -10.77 7.11 99.48 0.71 -10.07 16 18 H -0.24 -8.76 7.11 99.48 0.71 -8.05 16 19 C 0.17 6.17 3.98 84.57 0.34 6.50 16 20 C 0.21 7.78 13.04 89.44 1.17 8.94 16 21 N -0.43 -16.76 18.54 20.00 0.37 -16.39 16 22 S 0.16 4.43 16.21 -56.49 -0.92 3.51 16 23 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 24 H 0.09 0.44 8.14 -2.39 -0.02 0.43 16 25 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 26 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.43 4.75 8.59 -92.71 -0.80 3.95 16 29 H 0.19 6.17 8.05 -2.91 -0.02 6.15 16 30 H 0.29 14.70 8.31 -92.71 -0.77 13.93 16 31 H 0.14 4.79 3.18 -2.39 -0.01 4.78 16 32 H 0.14 4.26 4.48 -21.53 -0.10 4.16 16 Total: -1.00 -73.33 291.14 3.39 -69.94 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: 0.25 Total: 15.36 kcal Atomic # 6 Polarization: 23.20 SS G_CDS: 7.19 Total: 30.39 kcal Atomic # 7 Polarization: -118.96 SS G_CDS: -4.76 Total: -123.72 kcal Atomic # 8 Polarization: -33.05 SS G_CDS: -0.08 Total: -33.13 kcal Atomic # 14 Polarization: 35.95 SS G_CDS: 1.71 Total: 37.65 kcal Atomic # 16 Polarization: 4.43 SS G_CDS: -0.92 Total: 3.51 kcal Total: -73.33 3.39 -69.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599232746.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.546 kcal (2) G-P(sol) polarization free energy of solvation -73.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds